{"id":"https://openalex.org/W1506427777","doi":"https://doi.org/10.1093/nar/gkv523","title":"INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity","display_name":"INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity","publication_year":2015,"publication_date":"2015-05-27","ids":{"openalex":"https://openalex.org/W1506427777","doi":"https://doi.org/10.1093/nar/gkv523","mag":"1506427777","pmid":"https://pubmed.ncbi.nlm.nih.gov/26019177"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv523","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W134/7476434/gkv523.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/W1/W134/7476434/gkv523.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000882827","display_name":"Damiano Piovesan","orcid":"https://orcid.org/0000-0001-8210-2390"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Damiano Piovesan","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, Padua 35121, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padua 35121, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087447838","display_name":"Manuel Giollo","orcid":"https://orcid.org/0000-0001-9434-2383"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Manuel Giollo","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, Padua 35121, Italy Department of Information Engineering, University of Padua, Padua 35121, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padua 35121, Italy Department of Information Engineering, University of Padua, Padua 35121, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030997708","display_name":"Emanuela Leonardi","orcid":"https://orcid.org/0000-0001-8486-8461"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Emanuela Leonardi","raw_affiliation_strings":["Department of Women's and Children's Health, University of Padua, Padua 35128, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Women's and Children's Health, University of Padua, Padua 35128, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029176853","display_name":"Carlo Ferrari","orcid":"https://orcid.org/0000-0003-3665-0446"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Ferrari","raw_affiliation_strings":["Department of Information Engineering, University of Padua, Padua 35121, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Engineering, University of Padua, Padua 35121, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvio C.E. Tosatto","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, Padua 35121, Italy CNR Institute of Neuroscience, Padua 35121, Italy silvio.tosatto@unipd.it"],"raw_orcid":"https://orcid.org/0000-0003-4525-7793","affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, Padua 35121, Italy CNR Institute of Neuroscience, Padua 35121, Italy silvio.tosatto@unipd.it","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5066560665"],"corresponding_institution_ids":["https://openalex.org/I138689650"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":4.7293,"has_fulltext":true,"cited_by_count":110,"citation_normalized_percentile":{"value":0.9556016,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"43","issue":"W1","first_page":"W134","last_page":"W140"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inga","display_name":"Inga","score":0.8044612407684326},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7262513637542725},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6715576648712158},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.6199845671653748},{"id":"https://openalex.org/keywords/usability","display_name":"Usability","score":0.5679805874824524},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.54469233751297},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5322142839431763},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4793315827846527},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.4690077006816864},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4614796042442322},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.4276348054409027},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4205136001110077},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.41047054529190063},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.41008591651916504},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.26667046546936035},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2585548460483551},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2129441797733307},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18980160355567932},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.17474448680877686},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1712714433670044},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1583540141582489},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10573074221611023},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10536569356918335},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.07882300019264221},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.0780080258846283}],"concepts":[{"id":"https://openalex.org/C2777528026","wikidata":"https://www.wikidata.org/wiki/Q290354","display_name":"Inga","level":2,"score":0.8044612407684326},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7262513637542725},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6715576648712158},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.6199845671653748},{"id":"https://openalex.org/C170130773","wikidata":"https://www.wikidata.org/wiki/Q216378","display_name":"Usability","level":2,"score":0.5679805874824524},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.54469233751297},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5322142839431763},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4793315827846527},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.4690077006816864},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4614796042442322},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.4276348054409027},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4205136001110077},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41047054529190063},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.41008591651916504},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.26667046546936035},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2585548460483551},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2129441797733307},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18980160355567932},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.17474448680877686},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1712714433670044},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1583540141582489},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10573074221611023},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10536569356918335},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.07882300019264221},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0780080258846283},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkv523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv523","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W134/7476434/gkv523.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26019177","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26019177","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3458186","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489281","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:www.research.unipd.it:11577/3185390","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3185390","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv523","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv523","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W134/7476434/gkv523.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G2334119310","display_name":null,"funder_award_id":"GR-2011-02347754","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"},{"id":"https://openalex.org/G2885206739","display_name":null,"funder_award_id":"MFAG12740","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"},{"id":"https://openalex.org/G3526188868","display_name":null,"funder_award_id":"GR-2011-02346845","funder_id":"https://openalex.org/F4320321781","funder_display_name":"Ministero della Salute"},{"id":"https://openalex.org/G6504299545","display_name":null,"funder_award_id":"16621","funder_id":"https://openalex.org/F4320324143","funder_display_name":"Fondazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320321781","display_name":"Ministero della Salute","ror":"https://ror.org/00789fa95"},{"id":"https://openalex.org/F4320321966","display_name":"Universit\u00e0 degli Studi di Padova","ror":"https://ror.org/00240q980"},{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"},{"id":"https://openalex.org/F4320324143","display_name":"Fondazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1506427777.pdf","grobid_xml":"https://content.openalex.org/works/W1506427777.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1585743302","https://openalex.org/W1644749979","https://openalex.org/W1956694423","https://openalex.org/W1974116969","https://openalex.org/W1990056477","https://openalex.org/W2006762667","https://openalex.org/W2011465123","https://openalex.org/W2027454509","https://openalex.org/W2037036397","https://openalex.org/W2043009661","https://openalex.org/W2044911589","https://openalex.org/W2051987305","https://openalex.org/W2055043387","https://openalex.org/W2062533676","https://openalex.org/W2068072987","https://openalex.org/W2076620247","https://openalex.org/W2098127859","https://openalex.org/W2102814386","https://openalex.org/W2103017472","https://openalex.org/W2105924489","https://openalex.org/W2110115297","https://openalex.org/W2111209586","https://openalex.org/W2116423958","https://openalex.org/W2117486996","https://openalex.org/W2119027485","https://openalex.org/W2129795133","https://openalex.org/W2135621733","https://openalex.org/W2141885858","https://openalex.org/W2151946481","https://openalex.org/W2158714788","https://openalex.org/W2160997973","https://openalex.org/W2168799629","https://openalex.org/W2605068739","https://openalex.org/W4210561386","https://openalex.org/W4235754768","https://openalex.org/W4236236547","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2100369842","https://openalex.org/W2284308121","https://openalex.org/W1506427777","https://openalex.org/W2362612061","https://openalex.org/W2892158704","https://openalex.org/W2128577546","https://openalex.org/W2952639490","https://openalex.org/W1987231763","https://openalex.org/W2571339157","https://openalex.org/W3126246267"],"abstract_inverted_index":{"Identifying":[0],"protein":[1,43],"functions":[2],"can":[3,78],"be":[4,79],"useful":[5],"for":[6,69,92],"numerous":[7],"applications":[8],"in":[9,123],"biology.":[10],"The":[11,75,94,128],"prediction":[12],"of":[13,48],"gene":[14],"ontology":[15],"(GO)":[16],"functional":[17,73],"terms":[18,71],"from":[19,45,134],"sequence":[20],"remains":[21],"however":[22],"a":[23,37,46,88],"challenging":[24],"task,":[25],"as":[26],"shown":[27,118],"by":[28],"the":[29,99,104,111,124],"recent":[30],"CAFA":[31],"experiments.":[32],"Here":[33],"we":[34],"present":[35],"INGA,":[36],"web":[38,89,130],"server":[39,77,131],"developed":[40],"to":[41,65,119],"predict":[42],"function":[44],"combination":[47],"three":[49],"orthogonal":[50],"approaches.":[51],"Sequence":[52],"similarity":[53],"and":[54,86,115],"domain":[55],"architecture":[56],"searches":[57],"are":[58],"combined":[59],"with":[60,103],"protein-protein":[61],"interaction":[62],"network":[63],"data":[64,113],"derive":[66],"consensus":[67],"predictions":[68,102],"GO":[70,100],"using":[72],"enrichment.":[74],"INGA":[76,107,129],"queried":[80],"both":[81],"programmatically":[82],"through":[83,87],"RESTful":[84],"services":[85],"interface":[90],"designed":[91],"usability.":[93],"latter":[95],"provides":[96],"output":[97],"supporting":[98],"term":[101],"annotating":[105],"sequences.":[106],"is":[108,132],"validated":[109],"on":[110],"CAFA-1":[112],"set":[114],"was":[116],"recently":[117],"perform":[120],"consistently":[121],"well":[122],"CAFA-2":[125],"blind":[126],"test.":[127],"available":[133],"URL:":[135],"http://protein.bio.unipd.it/inga.":[136]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":25},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
