{"id":"https://openalex.org/W25934806","doi":"https://doi.org/10.1093/nar/gkv400","title":"\u6301\u7d9a\u53ef\u80fd\u306a\u5730\u57df\u793e\u4f1a\u306b\u5411\u3051\u3066--\u5730\u7406\u6559\u80b2\u306e\u6311\u6226(3)\u30b0\u30ed\u30fc\u30d0\u30eb\u306a\u4e16\u754c\u3068\u79c1\u305f\u3061\u306e\u751f\u6d3b--\u30d5\u30fc\u30c9\u30fb\u30de\u30a4\u30ec\u30fc\u30b8\u304b\u3089\u8003\u3048\u308b","display_name":"\u6301\u7d9a\u53ef\u80fd\u306a\u5730\u57df\u793e\u4f1a\u306b\u5411\u3051\u3066--\u5730\u7406\u6559\u80b2\u306e\u6311\u6226(3)\u30b0\u30ed\u30fc\u30d0\u30eb\u306a\u4e16\u754c\u3068\u79c1\u305f\u3061\u306e\u751f\u6d3b--\u30d5\u30fc\u30c9\u30fb\u30de\u30a4\u30ec\u30fc\u30b8\u304b\u3089\u8003\u3048\u308b","publication_year":2008,"publication_date":"2008-06-01","ids":{"openalex":"https://openalex.org/W25934806","doi":"https://doi.org/10.1093/nar/gkv400","mag":"25934806"},"language":"en","primary_location":{"id":"mag:25934806","is_oa":false,"landing_page_url":"http://ci.nii.ac.jp/naid/40016061987","pdf_url":null,"source":{"id":"https://openalex.org/S4306546359","display_name":"\u5730\u7406","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"\u5730\u7406","raw_type":null},"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050016721","display_name":"\u6b63\u4eba \u5c0f\u6797","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"\u6b63\u4eba \u5c0f\u6797","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5050016721"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00338164,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"53","issue":"6","first_page":"72","last_page":"79"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.005400000140070915,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2804186940193176}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2804186940193176}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:25934806","is_oa":false,"landing_page_url":"http://ci.nii.ac.jp/naid/40016061987","pdf_url":null,"source":{"id":"https://openalex.org/S4306546359","display_name":"\u5730\u7406","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"\u5730\u7406","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8650583986","display_name":null,"funder_award_id":"P30 CA030199","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Localize.pytom,":[0],"available":[1,182,190,217],"through":[2],"http://localize.pytom.org":[3],"is":[4,16,27,61,215],"a":[5,17,110,115,125,136,239],"webserver":[6],"for":[7,81,162,183,218],"the":[8,12,53,64,133,142,163,179,210,222,225,230,234],"localize":[9],"module":[10],"in":[11,52,58,191,203,238],"PyTom":[13],"package.":[14],"It":[15],"free":[18],"website":[19],"and":[20,25,39,45,48,93,113,158,189,221],"open":[21],"to":[22,67,101,144,159,227],"all":[23,173],"users":[24],"there":[26],"no":[28],"login":[29],"requirement.":[30],"The":[31],"server":[32,134],"accepts":[33],"tomograms":[34,60],"as":[35,89,118],"they":[36],"are":[37,78,181,187],"imaged":[38,72],"reconstructed":[40],"by":[41,84],"Cryo-Electron":[42],"Tomography":[43],"(CET)":[44],"returns":[46],"densities":[47],"coordinates":[49,186],"of":[50,56,63,71,75,105,209],"candidate-macromolecules":[51],"tomogram.":[54],"Localization":[55,108],"macromolecules":[57,175,214],"cryo-electron":[59],"one":[62,212],"key":[65],"procedures":[66,87],"unravel":[68],"structural":[69,82],"features":[70],"macromolecules.":[73],"Positions":[74],"localized":[76],"molecules":[77],"further":[79,228],"used":[80,100],"analysis":[83,201],"single":[85],"particle":[86],"such":[88],"fine":[90,149],"alignment,":[91],"averaging":[92],"classification.":[94],"Accurate":[95],"localization":[96],"can":[97,122,195],"be":[98,124,196],"furthermore":[99],"generate":[102],"molecular":[103],"atlases":[104],"whole":[106],"cells.":[107],"uses":[109],"cross-correlation-based":[111],"score":[112,236],"requires":[114],"reference":[116,121],"volume":[117],"input.":[119],"A":[120,206],"either":[123,146],"previously":[126],"detected":[127,235],"macromolecular":[128],"structure":[129],"or":[130,148],"extrapolated":[131],"on":[132,154,233],"from":[135,178],"specific":[137],"PDB":[138],"chain.":[139],"Users":[140],"have":[141],"option":[143,226],"use":[145],"coarse":[147],"angular":[150],"sampling":[151],"strategies":[152],"based":[153,232],"uniformly":[155],"distributed":[156],"rotations":[157],"accurately":[160],"compensate":[161],"CET":[164],"common":[165],"'Missing":[166],"Wedge'":[167],"artefact":[168],"during":[169],"sampling.":[170],"After":[171],"completion,":[172],"candidate":[174],"cut":[176],"out":[177],"tomogram":[180],"download.":[184],"Their":[185],"stored":[188],"XML":[192],"format,":[193],"which":[194],"easily":[197],"integrated":[198],"into":[199],"successive":[200],"steps":[202],"other":[204],"software.":[205],"pre-computed":[207],"average":[208],"first":[211],"hundred":[213],"also":[216],"immediate":[219],"download,":[220],"user":[223],"has":[224],"analyse":[229],"average,":[231],"distribution":[237],"novel":[240],"web-density":[241],"viewer.":[242]},"counts_by_year":[],"updated_date":"2025-07-23T07:14:22.002805","created_date":"2016-06-24T00:00:00"}
