{"id":"https://openalex.org/W1977896930","doi":"https://doi.org/10.1093/nar/gkv395","title":"i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly","display_name":"i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly","publication_year":2015,"publication_date":"2015-04-29","ids":{"openalex":"https://openalex.org/W1977896930","doi":"https://doi.org/10.1093/nar/gkv395","mag":"1977896930","pmid":"https://pubmed.ncbi.nlm.nih.gov/25925574"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv395","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv395","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W57/7476160/gkv395.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/W1/W57/7476160/gkv395.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059256221","display_name":"Hana Imrichov\u00e1","orcid":"https://orcid.org/0000-0003-0385-1823"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Hana Imrichov\u00e1","raw_affiliation_strings":["Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001053440","display_name":"Gert Hulselmans","orcid":"https://orcid.org/0000-0003-2205-1899"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Gert Hulselmans","raw_affiliation_strings":["Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066069450","display_name":"Zeynep Kalender Atak","orcid":"https://orcid.org/0000-0003-4761-8169"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Zeynep Kalender\u00a0Atak","raw_affiliation_strings":["Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031225061","display_name":"Delphine Potier","orcid":"https://orcid.org/0000-0003-1684-9888"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Delphine Potier","raw_affiliation_strings":["Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002137087","display_name":"Stein Aerts","orcid":"https://orcid.org/0000-0002-8006-0315"},"institutions":[{"id":"https://openalex.org/I4210105714","display_name":"Center for Human Genetics","ror":"https://ror.org/01gcrbc43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210105714"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE","US"],"is_corresponding":false,"raw_author_name":"Stein Aerts","raw_affiliation_strings":["Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium stein.aerts@med.kuleuven.be"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Computational Biology, Center for Human Genetics, University of Leuven, 3000 Leuven, Belgium stein.aerts@med.kuleuven.be","institution_ids":["https://openalex.org/I4210105714","https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":6.0594,"has_fulltext":true,"cited_by_count":217,"citation_normalized_percentile":{"value":0.9705302,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"43","issue":"W1","first_page":"W57","last_page":"W64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8461215496063232},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6601173877716064},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.6253585815429688},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.6075278520584106},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.585128903388977},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5462148189544678},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.5288568139076233},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46091535687446594},{"id":"https://openalex.org/keywords/chip-sequencing","display_name":"ChIP-sequencing","score":0.43403348326683044},{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"Chromatin immunoprecipitation","score":0.414841890335083},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39907750487327576},{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.27190864086151123},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2519826292991638},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.14280939102172852},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.09631180763244629}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8461215496063232},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6601173877716064},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.6253585815429688},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.6075278520584106},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.585128903388977},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5462148189544678},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.5288568139076233},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46091535687446594},{"id":"https://openalex.org/C176619506","wikidata":"https://www.wikidata.org/wiki/Q5065899","display_name":"ChIP-sequencing","level":5,"score":0.43403348326683044},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.414841890335083},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39907750487327576},{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.27190864086151123},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2519826292991638},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.14280939102172852},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.09631180763244629}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001859","descriptor_name":"Bone Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001859","descriptor_name":"Bone Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001859","descriptor_name":"Bone Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004330","descriptor_name":"Drosophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004742","descriptor_name":"Enhancer Elements, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012512","descriptor_name":"Sarcoma, Ewing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012512","descriptor_name":"Sarcoma, Ewing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012512","descriptor_name":"Sarcoma, Ewing","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050436","descriptor_name":"Regulatory Elements, Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkv395","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv395","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W57/7476160/gkv395.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25925574","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25925574","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3458187","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489282","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/498791","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/123456789/498791","pdf_url":null,"source":{"id":"https://openalex.org/S7407055369","display_name":"Lirias","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol. 43 (W1), Art.No. gkv395, (W57-W64)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv395","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv395","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W57/7476160/gkv395.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"},{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G1780364092","display_name":null,"funder_award_id":"PF/10/016","funder_id":"https://openalex.org/F4320335227","funder_display_name":"Bijzonder Onderzoeksfonds UGent"},{"id":"https://openalex.org/G4213493598","display_name":null,"funder_award_id":"G.0791.14","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G4500797286","display_name":null,"funder_award_id":"G.0640.13","funder_id":"https://openalex.org/F4320321730","funder_display_name":"Fonds Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G5166985822","display_name":null,"funder_award_id":"PF/10/016","funder_id":"https://openalex.org/F4320322308","funder_display_name":"KU Leuven"},{"id":"https://openalex.org/G5683160189","display_name":null,"funder_award_id":"OT/13/103","funder_id":"https://openalex.org/F4320322308","funder_display_name":"KU Leuven"},{"id":"https://openalex.org/G7614001721","display_name":null,"funder_award_id":"2012-F2","funder_id":"https://openalex.org/F4320328144","funder_display_name":"Fondation contre le Cancer"}],"funders":[{"id":"https://openalex.org/F4320321730","display_name":"Fonds Wetenschappelijk Onderzoek","ror":"https://ror.org/03qtxy027"},{"id":"https://openalex.org/F4320322308","display_name":"KU Leuven","ror":"https://ror.org/05f950310"},{"id":"https://openalex.org/F4320327317","display_name":"Kom op tegen Kanker","ror":null},{"id":"https://openalex.org/F4320328144","display_name":"Fondation contre le Cancer","ror":null},{"id":"https://openalex.org/F4320332898","display_name":"Stand Up To Cancer","ror":"https://ror.org/01dmpb598"},{"id":"https://openalex.org/F4320335227","display_name":"Bijzonder Onderzoeksfonds UGent","ror":"https://ror.org/00cv9y106"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1977896930.pdf","grobid_xml":"https://content.openalex.org/works/W1977896930.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1971516612","https://openalex.org/W1979594866","https://openalex.org/W1979849852","https://openalex.org/W1996760543","https://openalex.org/W2010457001","https://openalex.org/W2014677321","https://openalex.org/W2018433132","https://openalex.org/W2038963685","https://openalex.org/W2039176012","https://openalex.org/W2065635150","https://openalex.org/W2067899297","https://openalex.org/W2076154138","https://openalex.org/W2077026063","https://openalex.org/W2078455244","https://openalex.org/W2102619694","https://openalex.org/W2103017472","https://openalex.org/W2103882919","https://openalex.org/W2107281049","https://openalex.org/W2108390464","https://openalex.org/W2108871359","https://openalex.org/W2109555487","https://openalex.org/W2115577355","https://openalex.org/W2118596665","https://openalex.org/W2118608526","https://openalex.org/W2125362831","https://openalex.org/W2130410032","https://openalex.org/W2134526812","https://openalex.org/W2140729960","https://openalex.org/W2142570576","https://openalex.org/W2150612336","https://openalex.org/W2155142785","https://openalex.org/W2155484811","https://openalex.org/W2157550210","https://openalex.org/W2157952888","https://openalex.org/W2158217645","https://openalex.org/W2158485480","https://openalex.org/W2162142896","https://openalex.org/W2171030481","https://openalex.org/W2172121366","https://openalex.org/W2179438025","https://openalex.org/W2184417913","https://openalex.org/W2259938310","https://openalex.org/W2916083703","https://openalex.org/W6655167354"],"related_works":["https://openalex.org/W2995500456","https://openalex.org/W2766116317","https://openalex.org/W2586783543","https://openalex.org/W2305116528","https://openalex.org/W2289499401","https://openalex.org/W2282329001","https://openalex.org/W2549332635","https://openalex.org/W2076891695","https://openalex.org/W1968083284","https://openalex.org/W3045946041"],"abstract_inverted_index":{"i-cisTarget":[0,21,46,63,140,164],"is":[1,111,165,173],"a":[2,9,36,114,134],"web":[3],"tool":[4],"to":[5,26,146,169],"predict":[6],"regulators":[7,29],"of":[8,11,38,45,87,120,163],"set":[10,37,86],"genomic":[12],"regions,":[13],"such":[14],"as":[15],"ChIP-seq":[16,97,101],"peaks":[17],"or":[18],"co-regulated/similar":[19],"enhancers.":[20],"can":[22],"also":[23,55,126],"be":[24],"used":[25],"identify":[27,147],"upstream":[28],"and":[30,60,71,103,157,167,171],"their":[31],"target":[32,131],"enhancers":[33],"starting":[34,150],"from":[35,76,129,151],"co-expressed":[39],"genes.":[40],"Whereas":[41],"the":[42,52,84],"original":[43],"version":[44],"was":[47],"focused":[48],"on":[49,113,141],"Drosophila":[50],"data,":[51,98],"2015":[53],"update":[54],"provides":[56],"support":[57],"for":[58],"human":[59],"mouse":[61],"data.":[62,106,161],"detects":[64],"transcription":[65,95],"factor":[66,96],"motifs":[67],"(position":[68],"weight":[69],"matrices)":[70],"experimental":[72,90],"data":[73,91,102],"tracks":[74,92],"(e.g.":[75],"ENCODE,":[77],"Roadmap":[78],"Epigenomics)":[79],"that":[80],"are":[81],"enriched":[82],"in":[83],"input":[85],"regions.":[88],"As":[89],"we":[93],"include":[94],"histone":[99],"modification":[100],"open":[104,168],"chromatin":[105],"The":[107],"underlying":[108],"processing":[109],"method":[110],"based":[112],"ranking-and-recovery":[115],"procedure,":[116],"allowing":[117],"accurate":[118],"determination":[119],"enrichment":[121],"across":[122],"heterogeneous":[123],"datasets,":[124],"while":[125],"discriminating":[127],"direct":[128],"indirect":[130],"regions":[132],"through":[133],"'leading":[135],"edge'":[136],"analysis.":[137],"We":[138],"illustrate":[139],"various":[142],"Ewing":[143],"sarcoma":[144],"datasets":[145],"EWS-FLI1":[148],"targets":[149],"ChIP-seq,":[152],"differential":[153,155,158],"ATAC-seq,":[154],"H3K27ac":[156],"gene":[159],"expression":[160],"Use":[162],"free":[166],"all,":[170],"there":[172],"no":[174],"login":[175],"requirement.":[176],"Address:":[177],"http://gbiomed.kuleuven.be/apps/lcb/i-cisTarget.":[178]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":30},{"year":2022,"cited_by_count":27},{"year":2021,"cited_by_count":25},{"year":2020,"cited_by_count":29},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":5}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}