{"id":"https://openalex.org/W1868398984","doi":"https://doi.org/10.1093/nar/gkv351","title":"SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations","display_name":"SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations","publication_year":2015,"publication_date":"2015-06-03","ids":{"openalex":"https://openalex.org/W1868398984","doi":"https://doi.org/10.1093/nar/gkv351","mag":"1868398984","pmid":"https://pubmed.ncbi.nlm.nih.gov/26040700"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv351","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W295/7476091/gkv351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/W1/W295/7476091/gkv351.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085749572","display_name":"Alexis Dereeper","orcid":"https://orcid.org/0000-0001-8120-8409"},"institutions":[{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210115873","display_name":"Laboratoire des Interactions Plantes Micro-Organismes","ror":"https://ror.org/02gwt2810","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I134560555","https://openalex.org/I4210088668","https://openalex.org/I4210096427","https://openalex.org/I4210115873","https://openalex.org/I4405258862"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Alexis Dereeper","raw_affiliation_strings":["UMR Interaction Plante-Microorganismes et Environnement (IPME), Institut de Recherche pour le D\u00e9veloppement (IRD), BP 64501, 34394 Montpellier Cedex 5, France alexis.dereeper@ird.fr","UMR IPME - UMR - Interactions Plantes Microorganismes Environnement (IRD France-Sud 911, avenue Agropolis BP 64501 34394 Montpellier cedex 5 - France)"],"affiliations":[{"raw_affiliation_string":"UMR Interaction Plante-Microorganismes et Environnement (IPME), Institut de Recherche pour le D\u00e9veloppement (IRD), BP 64501, 34394 Montpellier Cedex 5, France alexis.dereeper@ird.fr","institution_ids":[]},{"raw_affiliation_string":"UMR IPME - UMR - Interactions Plantes Microorganismes Environnement (IRD France-Sud 911, avenue Agropolis BP 64501 34394 Montpellier cedex 5 - France)","institution_ids":["https://openalex.org/I4210115873","https://openalex.org/I4210166444","https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019664384","display_name":"F\u00e9lix Homa","orcid":"https://orcid.org/0000-0003-0852-707X"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210120904","display_name":"Genetic Improvement and Adaptation of Mediterranean and Tropical Plants","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Felix Homa","raw_affiliation_strings":["UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France","UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)"],"affiliations":[{"raw_affiliation_string":"UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033352043","display_name":"Gwendoline Andres","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2802436875","display_name":"Station Biologique de Roscoff","ror":"https://ror.org/03s0pzj56","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2802436875","https://openalex.org/I39804081","https://openalex.org/I4210107625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gwendoline Andres","raw_affiliation_strings":["UPMC, CNRS, ABiMS Station Biologique, 29680 Roscoff, France","SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)"],"affiliations":[{"raw_affiliation_string":"UPMC, CNRS, ABiMS Station Biologique, 29680 Roscoff, France","institution_ids":["https://openalex.org/I2802436875","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"SBR - Station biologique de Roscoff [Roscoff] (Place Georges Teissier - BP 74 29682 ROSCOFF CEDEX - France)","institution_ids":["https://openalex.org/I2802436875"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000218045","display_name":"Guilhem Semp\u00e9r\u00e9","orcid":"https://orcid.org/0000-0001-7429-2091"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4387155260","display_name":"Interactions hotes-vecteurs-parasites-environnement dans les maladies tropicales n\u00e9glig\u00e9es dues aux trypanosomatides","ror":"https://ror.org/05ye29x39","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4387155260"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guilhem Sempere","raw_affiliation_strings":["UMR Intertryp CIRAD, Campus International de Baillarguet, 34398 Montpellier Cedex 5, France","UMR INTERTRYP - Interactions h\u00f4tes-vecteurs-parasites-environnement dans les maladies tropicales n\u00e9glig\u00e9es dues aux trypanosomatides (Campus International de Baillarguet TA A-17/G 34398 Montpellier cedex 5 - France)"],"affiliations":[{"raw_affiliation_string":"UMR Intertryp CIRAD, Campus International de Baillarguet, 34398 Montpellier Cedex 5, France","institution_ids":["https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR INTERTRYP - Interactions h\u00f4tes-vecteurs-parasites-environnement dans les maladies tropicales n\u00e9glig\u00e9es dues aux trypanosomatides (Campus International de Baillarguet TA A-17/G 34398 Montpellier cedex 5 - France)","institution_ids":["https://openalex.org/I4387155260"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010755770","display_name":"Gautier Sarah","orcid":"https://orcid.org/0000-0001-5179-972X"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210120904","display_name":"Genetic Improvement and Adaptation of Mediterranean and Tropical Plants","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gautier Sarah","raw_affiliation_strings":["UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France","UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)"],"affiliations":[{"raw_affiliation_string":"UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070467684","display_name":"Yann Hueber","orcid":null},"institutions":[{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yann Hueber","raw_affiliation_strings":["Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France","Bioversity International [Montpellier] (Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5 - France)"],"affiliations":[{"raw_affiliation_string":"Bioversity International, Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5, France","institution_ids":["https://openalex.org/I251321805"]},{"raw_affiliation_string":"Bioversity International [Montpellier] (Parc Scientifique Agropolis II, 34397 Montpellier Cedex 5 - France)","institution_ids":["https://openalex.org/I251321805"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034135718","display_name":"Jean Fran\u00e7ois Dufayard","orcid":"https://orcid.org/0000-0002-7427-6822"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210120904","display_name":"Genetic Improvement and Adaptation of Mediterranean and Tropical Plants","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Fran\u00e7ois Dufayard","raw_affiliation_strings":["UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France","UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)"],"affiliations":[{"raw_affiliation_string":"UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I131077856"]},{"raw_affiliation_string":"UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I251321805"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105513989","display_name":"Manuel Ru\u00edz","orcid":"https://orcid.org/0000-0001-8153-276X"},"institutions":[{"id":"https://openalex.org/I251321805","display_name":"Agropolis International","ror":"https://ror.org/00txxwv34","country_code":"FR","type":"other","lineage":["https://openalex.org/I251321805"]},{"id":"https://openalex.org/I4210120904","display_name":"Genetic Improvement and Adaptation of Mediterranean and Tropical Plants","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I64492213","display_name":"International Center for Tropical Agriculture","ror":"https://ror.org/037wny167","country_code":"CO","type":"funder","lineage":["https://openalex.org/I1286583668","https://openalex.org/I64492213"]}],"countries":["CO","FR"],"is_corresponding":false,"raw_author_name":"Manuel Ruiz","raw_affiliation_strings":["UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France Agrobiodiversity research area, International Center for Tropical Agriculture (CIAT), Cali 6713, Colombia","UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)","CIAT - International Center for Tropical Agriculture [Colombie] (Headquarters, Cali, Colombia - Colombie)"],"affiliations":[{"raw_affiliation_string":"UMR Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes M\u00e9diterran\u00e9ennes et Tropicales (AGAP), CIRAD, F-34398 Montpellier, France Agrobiodiversity research area, International Center for Tropical Agriculture (CIAT), Cali 6713, Colombia","institution_ids":[]},{"raw_affiliation_string":"UMR AGAP - Am\u00e9lioration g\u00e9n\u00e9tique et adaptation des plantes m\u00e9diterran\u00e9ennes et tropicales (TA A-108 / 03 - Avenue Agropolis - 34398 Montpellier Cedex 5 France - France)","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I251321805"]},{"raw_affiliation_string":"CIAT - International Center for Tropical Agriculture [Colombie] (Headquarters, Cali, Colombia - Colombie)","institution_ids":["https://openalex.org/I64492213"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5085749572"],"corresponding_institution_ids":["https://openalex.org/I251321805","https://openalex.org/I4210115873","https://openalex.org/I4210166444"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.9273,"has_fulltext":false,"cited_by_count":79,"citation_normalized_percentile":{"value":0.85611598,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"43","issue":"W1","first_page":"W295","last_page":"W300"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.727464497089386},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"Linkage disequilibrium","score":0.5318194627761841},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.523014485836029},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5229367017745972},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.47068077325820923},{"id":"https://openalex.org/keywords/tag-snp","display_name":"Tag SNP","score":0.4384155869483948},{"id":"https://openalex.org/keywords/genotyping","display_name":"Genotyping","score":0.43556973338127136},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.0989496111869812},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0912051796913147}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.727464497089386},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.5318194627761841},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.523014485836029},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5229367017745972},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.47068077325820923},{"id":"https://openalex.org/C55060382","wikidata":"https://www.wikidata.org/wiki/Q7675093","display_name":"Tag SNP","level":5,"score":0.4384155869483948},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.43556973338127136},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0989496111869812},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0912051796913147}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055106","descriptor_name":"Genome-Wide Association Study","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060005","descriptor_name":"Genotyping Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkv351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv351","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W295/7476091/gkv351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26040700","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26040700","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3458206","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489301","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01279141v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01279141","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2015, 43 (W1), pp.W295-W300. &#x27E8;10.1093/nar/gkv351&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:agritrop.cirad.fr:577746","is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/577746/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"article"},{"id":"pmh:oai:cgspace.cgiar.org:10568/67422","is_oa":true,"landing_page_url":"https://hdl.handle.net/10568/67422","pdf_url":null,"source":{"id":"https://openalex.org/S4306402055","display_name":"CGSPace A Repository of Agricultural Research Outputs (Consultative Group for International Agricultural Research)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1286583668","host_organization_name":"CGIAR","host_organization_lineage":["https://openalex.org/I1286583668"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv351","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv351","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W295/7476091/gkv351.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1868398984.pdf","grobid_xml":"https://content.openalex.org/works/W1868398984.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W1583240815","https://openalex.org/W2017666239","https://openalex.org/W2039552121","https://openalex.org/W2061937267","https://openalex.org/W2062153375","https://openalex.org/W2087312818","https://openalex.org/W2101612246","https://openalex.org/W2106578986","https://openalex.org/W2110035718","https://openalex.org/W2119180969","https://openalex.org/W2119444539","https://openalex.org/W2120819924","https://openalex.org/W2124676809","https://openalex.org/W2136482257","https://openalex.org/W2137288796","https://openalex.org/W2140784970","https://openalex.org/W2146374090","https://openalex.org/W2149992227","https://openalex.org/W2161633633","https://openalex.org/W2161645441","https://openalex.org/W2167155938","https://openalex.org/W2299429593","https://openalex.org/W2410507634","https://openalex.org/W2548864823","https://openalex.org/W3199943451","https://openalex.org/W6714365133"],"related_works":["https://openalex.org/W2391803837","https://openalex.org/W4361273069","https://openalex.org/W2093214227","https://openalex.org/W2039373331","https://openalex.org/W2473486371","https://openalex.org/W1539262549","https://openalex.org/W1978000554","https://openalex.org/W2187968078","https://openalex.org/W2079824395","https://openalex.org/W2102796473"],"abstract_inverted_index":{"SNiPlay":[0,172],"is":[1,173],"a":[2,80,134,156,169],"web-based":[3],"tool":[4],"for":[5,67,85,116,139],"detection,":[6],"management":[7],"and":[8,19,31,49,69,77,108,126,164],"analysis":[9,125],"of":[10,75,102,128,136,142],"genetic":[11],"variants":[12],"including":[13],"both":[14],"single":[15],"nucleotide":[16],"polymorphisms":[17,71],"(SNPs)":[18],"InDels.":[20],"Version":[21],"3":[22],"now":[23],"extends":[24],"functionalities":[25],"in":[26,89],"order":[27],"to":[28,91],"easily":[29],"manage":[30],"exploit":[32],"SNPs":[33],"derived":[34],"from":[35],"next":[36],"generation":[37],"sequencing":[38],"technologies,":[39],"such":[40],"as":[41,168],"GBS":[42],"(genotyping":[43],"by":[44,97],"sequencing),":[45],"WGRS":[46],"(whole":[47],"gre-sequencing)":[48],"RNA-Seq":[50],"technologies.":[51],"Based":[52],"on":[53,155],"the":[54,61,92,98,143,148,160],"standard":[55],"VCF":[56],"(variant":[57],"call":[58],"format)":[59],"format,":[60],"application":[62,99],"offers":[63],"an":[64],"intuitive":[65],"interface":[66],"filtering":[68],"comparing":[70],"using":[72,159],"user-defined":[73],"sets":[74],"individuals":[76],"then":[78,165],"establishing":[79],"reliable":[81],"genotyping":[82],"data":[83],"matrix":[84],"further":[86],"analyses.":[87],"Namely,":[88],"addition":[90],"various":[93],"scaled-up":[94],"analyses":[95],"allowed":[96],"(genomic":[100],"annotation":[101],"SNP,":[103],"diversity":[104],"analysis,":[105],"haplotype":[106],"reconstruction":[107],"network,":[109],"linkage":[110],"disequilibrium),":[111],"SNiPlay3":[112,144],"proposes":[113],"new":[114],"modules":[115],"GWAS":[117],"(genome-wide":[118],"association":[119],"studies),":[120],"population":[121],"stratification,":[122],"distance":[123],"tree":[124],"visualization":[127],"SNP":[129],"density.":[130],"Additionally,":[131],"we":[132],"developed":[133],"suite":[135],"Galaxy":[137,157,161,170],"wrappers":[138],"each":[140],"step":[141],"process,":[145],"so":[146],"that":[147],"complete":[149],"pipeline":[150],"can":[151],"also":[152],"be":[153,166],"deployed":[154],"instance":[158],"ToolShed":[162],"procedure":[163],"computed":[167],"workflow.":[171],"accessible":[174],"at":[175],"http://sniplay.southgreen.fr.":[176]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":16},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
