{"id":"https://openalex.org/W2147201730","doi":"https://doi.org/10.1093/nar/gkv253","title":"RiceNet v2: an improved network prioritization server for rice genes","display_name":"RiceNet v2: an improved network prioritization server for rice genes","publication_year":2015,"publication_date":"2015-03-26","ids":{"openalex":"https://openalex.org/W2147201730","doi":"https://doi.org/10.1093/nar/gkv253","mag":"2147201730","pmid":"https://pubmed.ncbi.nlm.nih.gov/25813048"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv253","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv253","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W122/17435583/gkv253.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/W1/W122/17435583/gkv253.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046811254","display_name":"Tak Lee","orcid":"https://orcid.org/0000-0001-7008-7605"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Tak Lee","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084156190","display_name":"Taeyun Oh","orcid":"https://orcid.org/0000-0002-0947-1381"},"institutions":[{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]},{"id":"https://openalex.org/I53012624","display_name":"Joint BioEnergy Institute","ror":"https://ror.org/03ww55028","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I53012624"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Taeyun Oh","raw_affiliation_strings":["The Joint Bioenergy Institute, Emeryville CA and Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA"],"affiliations":[{"raw_affiliation_string":"The Joint Bioenergy Institute, Emeryville CA and Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I53012624","https://openalex.org/I84218800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082946212","display_name":"Sunmo Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunmo Yang","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049171920","display_name":"Junha Shin","orcid":"https://orcid.org/0000-0003-3175-3446"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Junha Shin","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028639165","display_name":"Sohyun Hwang","orcid":"https://orcid.org/0000-0003-2461-6806"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sohyun Hwang","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005502529","display_name":"Chan Yeong Kim","orcid":"https://orcid.org/0000-0002-0868-9872"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chan Yeong Kim","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100439154","display_name":"Hyojin Kim","orcid":"https://orcid.org/0000-0001-7703-5170"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyojin Kim","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062569907","display_name":"Hongseok Shim","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hongseok Shim","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075624025","display_name":"Jung Eun Shim","orcid":"https://orcid.org/0000-0001-6341-9923"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jung Eun Shim","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056619719","display_name":"Pamela C. Ronald","orcid":"https://orcid.org/0000-0002-4107-1345"},"institutions":[{"id":"https://openalex.org/I53012624","display_name":"Joint BioEnergy Institute","ror":"https://ror.org/03ww55028","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I53012624"]},{"id":"https://openalex.org/I84218800","display_name":"University of California, Davis","ror":"https://ror.org/05rrcem69","country_code":"US","type":"education","lineage":["https://openalex.org/I84218800"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pamela C. Ronald","raw_affiliation_strings":["The Joint Bioenergy Institute, Emeryville CA and Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA insuklee@yonsei.ac.kr","The Joint Bioenergy Institute, Emeryville CA and Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA"],"affiliations":[{"raw_affiliation_string":"The Joint Bioenergy Institute, Emeryville CA and Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA insuklee@yonsei.ac.kr","institution_ids":[]},{"raw_affiliation_string":"The Joint Bioenergy Institute, Emeryville CA and Department of Plant Pathology and the Genome Center, University of California, Davis, CA 95616, USA","institution_ids":["https://openalex.org/I53012624","https://openalex.org/I84218800"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035867403","display_name":"Insuk Lee","orcid":"https://orcid.org/0000-0003-3146-6180"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Insuk Lee","raw_affiliation_strings":["Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea insuklee@yonsei.ac.kr","Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea insuklee@yonsei.ac.kr","institution_ids":[]},{"raw_affiliation_string":"Department of Biotechnology, College of Life Sciences and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5046811254"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.9103,"has_fulltext":true,"cited_by_count":86,"citation_normalized_percentile":{"value":0.97656677,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"43","issue":"W1","first_page":"W122","last_page":"W127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8891269564628601},{"id":"https://openalex.org/keywords/oryza-sativa","display_name":"Oryza sativa","score":0.7299217581748962},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6194788813591003},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.514302134513855},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4734370708465576},{"id":"https://openalex.org/keywords/functional-genomics","display_name":"Functional genomics","score":0.4394633173942566},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42945367097854614},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4284641146659851},{"id":"https://openalex.org/keywords/phenomics","display_name":"Phenomics","score":0.4220130443572998},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3371884226799011},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28961336612701416}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8891269564628601},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.7299217581748962},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6194788813591003},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.514302134513855},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4734370708465576},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.4394633173942566},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42945367097854614},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4284641146659851},{"id":"https://openalex.org/C98108635","wikidata":"https://www.wikidata.org/wiki/Q6497275","display_name":"Phenomics","level":5,"score":0.4220130443572998},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3371884226799011},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28961336612701416},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkv253","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv253","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W122/17435583/gkv253.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25813048","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25813048","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:ark:/13030/qt8dw2f4bc","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.805.7665","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.805.7665","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/a0/10/gkv253.PMC4489288.pdf","raw_type":"text"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt8dw2f4bc","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/8dw2f4bc","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 43, iss W1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3458193","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4489288","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv253","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv253","pdf_url":"https://academic.oup.com/nar/article-pdf/43/W1/W122/17435583/gkv253.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/2"}],"awards":[{"id":"https://openalex.org/G1286236842","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1337544421","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3083819904","display_name":null,"funder_award_id":"05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G3944918260","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G425189044","display_name":null,"funder_award_id":"DE-AC02-05CH","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4501827968","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4565140552","display_name":null,"funder_award_id":"-AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4841871747","display_name":null,"funder_award_id":"DE_AC02-05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5017536821","display_name":null,"funder_award_id":"2012M3A9C7050151","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G5315912995","display_name":null,"funder_award_id":"11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G5423939921","display_name":null,"funder_award_id":"2012M3A9C","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G5439719329","display_name":null,"funder_award_id":"DE-AC02-05CH11231]","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5802748842","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6320152228","display_name":null,"funder_award_id":"2010-0017649","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6330738325","display_name":null,"funder_award_id":"DE_AC02_05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6348972864","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6429026066","display_name":null,"funder_award_id":"DE-AC02-05CH112","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7340683655","display_name":null,"funder_award_id":"E-AC02-05CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7406122311","display_name":null,"funder_award_id":"AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7459535004","display_name":null,"funder_award_id":"2012M3A9B4028641","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G7629237052","display_name":null,"funder_award_id":"DE-AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7664691372","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7787287669","display_name":null,"funder_award_id":"AC02-05CH11231","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G7825954517","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8413608756","display_name":null,"funder_award_id":"DE-AC02-05CH1123","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G897164627","display_name":null,"funder_award_id":"DE-AC02_05CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147201730.pdf","grobid_xml":"https://content.openalex.org/works/W2147201730.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1973628414","https://openalex.org/W1986662234","https://openalex.org/W1992512552","https://openalex.org/W1999456032","https://openalex.org/W2003333370","https://openalex.org/W2005989052","https://openalex.org/W2007174731","https://openalex.org/W2031418322","https://openalex.org/W2055043387","https://openalex.org/W2059102372","https://openalex.org/W2068590125","https://openalex.org/W2074755764","https://openalex.org/W2076469310","https://openalex.org/W2082202339","https://openalex.org/W2109138480","https://openalex.org/W2117527407","https://openalex.org/W2118258530","https://openalex.org/W2131809153","https://openalex.org/W2131848047","https://openalex.org/W2134988768","https://openalex.org/W2138098955","https://openalex.org/W2139679196","https://openalex.org/W2140300290","https://openalex.org/W2149147330","https://openalex.org/W2152739006","https://openalex.org/W2166672269","https://openalex.org/W2175948239","https://openalex.org/W4236236547","https://openalex.org/W4247299051","https://openalex.org/W6681956162"],"related_works":["https://openalex.org/W2052257689","https://openalex.org/W2360935227","https://openalex.org/W2364993072","https://openalex.org/W2115576822","https://openalex.org/W2409251832","https://openalex.org/W2389242864","https://openalex.org/W2356429006","https://openalex.org/W2155595079","https://openalex.org/W2380568150","https://openalex.org/W2385787406"],"abstract_inverted_index":{"Rice":[0],"is":[1],"the":[2,35,38,56,60,69,103,138,146,176],"most":[3],"important":[4],"staple":[5],"food":[6],"crop":[7],"and":[8,33,48,106,128,145,169],"a":[9,20,65,95],"model":[10],"grass":[11,53,177],"for":[12,51,85,119,150,175],"studies":[13],"of":[14,37,43,59,71,97,102,137],"bioenergy":[15],"crops.":[16],"We":[17,155],"previously":[18],"published":[19],"genome-scale":[21],"functional":[22],"network":[23,39,82,96,120,125],"server":[24,84],"called":[25],"RiceNet,":[26],"constructed":[27],"by":[28],"integrating":[29],"diverse":[30],"genomics":[31,75],"data":[32],"demonstrated":[34],"use":[36,135],"in":[40,68,152,165],"genetic":[41],"dissection":[42],"rice":[44,74,166],"biotic":[45],"stress":[46],"responses":[47],"its":[49,173],"usefulness":[50,174],"other":[52],"species.":[54],"Since":[55],"initial":[57],"construction":[58],"network,":[61],"there":[62],"has":[63],"been":[64],"significant":[66],"increase":[67],"amount":[70],"publicly":[72],"available":[73],"data.":[76],"Here,":[77],"we":[78],"present":[79],"an":[80],"updated":[81],"prioritization":[83,121],"Oryza":[86],"sativa":[87,142],"ssp.":[88,143],"japonica,":[89],"RiceNet":[90,132,158],"v2":[91,113,133,159],"(http://www.inetbio.org/ricenet),":[92],"which":[93],"provides":[94,115],"25":[98],"765":[99],"genes":[100,136,163],"(70.1%":[101],"coding":[104],"genome)":[105],"1":[107],"775":[108],"000":[109],"co-functional":[110],"links.":[111],"Ricenet":[112],"also":[114],"two":[116],"complementary":[117],"methods":[118],"based":[122],"on:":[123],"(i)":[124],"direct":[126],"neighborhood":[127],"(ii)":[129],"context-associated":[130],"hubs.":[131],"can":[134],"related":[139],"subspecies":[140],"O.":[141],"indica":[144],"reference":[147],"plant":[148],"Arabidopsis":[149],"versatility":[151],"generating":[153],"hypotheses.":[154],"demonstrate":[156],"that":[157],"effectively":[160],"identifies":[161],"candidate":[162],"involved":[164],"root/shoot":[167],"development":[168],"defense":[170],"responses,":[171],"demonstrating":[172],"research":[178],"community.":[179]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":16},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
