{"id":"https://openalex.org/W2174699197","doi":"https://doi.org/10.1093/nar/gkv1245","title":"HGTree: database of horizontally transferred genes determined by tree reconciliation","display_name":"HGTree: database of horizontally transferred genes determined by tree reconciliation","publication_year":2015,"publication_date":"2015-11-17","ids":{"openalex":"https://openalex.org/W2174699197","doi":"https://doi.org/10.1093/nar/gkv1245","mag":"2174699197","pmid":"https://pubmed.ncbi.nlm.nih.gov/26578597"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv1245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1245","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D610/16661753/gkv1245.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/D1/D610/16661753/gkv1245.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021740365","display_name":"Hyeonsoo Jeong","orcid":"https://orcid.org/0000-0002-5565-2685"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["KR","US"],"is_corresponding":false,"raw_author_name":"Hyeonsoo Jeong","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA","Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea","Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104034719","display_name":"Samsun Sung","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165981","display_name":"CrystalGenomics (South Korea)","ror":"https://ror.org/05gk7hr65","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210165981"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Samsun Sung","raw_affiliation_strings":["C&K genomics, Main Bldg. #514, SNU Research Park, Seoul 151-919, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"C&K genomics, Main Bldg. #514, SNU Research Park, Seoul 151-919, Republic of Korea","institution_ids":["https://openalex.org/I4210165981"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070668558","display_name":"Taehyung Kwon","orcid":"https://orcid.org/0000-0002-5668-059X"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Taehyung Kwon","raw_affiliation_strings":["Department of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091422877","display_name":"Minseok Seo","orcid":"https://orcid.org/0000-0002-5364-7524"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Minseok Seo","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010835897","display_name":"Kelsey Caetano-Anoll\u00e9s","orcid":"https://orcid.org/0000-0001-6310-6679"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kelsey Caetano-Anoll\u00e9s","raw_affiliation_strings":["Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Animal Sciences, University of Illinois, Urbana, IL 61801, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064732973","display_name":"Sang Ho Choi","orcid":"https://orcid.org/0000-0003-3865-1039"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sang Ho Choi","raw_affiliation_strings":["National Research Laboratory of Molecular Microbiology and Toxicology, Department of Agricultural Biotechnology, Center for Food Safety and Toxicology, Seoul National University, Seoul 151-921, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Research Laboratory of Molecular Microbiology and Toxicology, Department of Agricultural Biotechnology, Center for Food Safety and Toxicology, Seoul National University, Seoul 151-921, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021758490","display_name":"Seoae Cho","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165981","display_name":"CrystalGenomics (South Korea)","ror":"https://ror.org/05gk7hr65","country_code":"KR","type":"company","lineage":["https://openalex.org/I4210165981"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Seoae Cho","raw_affiliation_strings":["C&K genomics, Main Bldg. #514, SNU Research Park, Seoul 151-919, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"C&K genomics, Main Bldg. #514, SNU Research Park, Seoul 151-919, Republic of Korea","institution_ids":["https://openalex.org/I4210165981"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046843019","display_name":"Arshan Nasir","orcid":"https://orcid.org/0000-0001-7200-0788"},"institutions":[{"id":"https://openalex.org/I16076960","display_name":"COMSATS University Islamabad","ror":"https://ror.org/00nqqvk19","country_code":"PK","type":"education","lineage":["https://openalex.org/I16076960"]}],"countries":["PK"],"is_corresponding":true,"raw_author_name":"Arshan Nasir","raw_affiliation_strings":["Department of Biosciences, COMSATS Institute of Information Technology, Park Road, Chak Shahzad, Islamabad 45550, Pakistan arshan_nasir@comsats.edu.pk","Department of Biosciences, COMSATS Institute of Information Technology, Park Road, Chak Shahzad, Islamabad 45550, Pakistan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biosciences, COMSATS Institute of Information Technology, Park Road, Chak Shahzad, Islamabad 45550, Pakistan arshan_nasir@comsats.edu.pk","institution_ids":["https://openalex.org/I16076960"]},{"raw_affiliation_string":"Department of Biosciences, COMSATS Institute of Information Technology, Park Road, Chak Shahzad, Islamabad 45550, Pakistan","institution_ids":["https://openalex.org/I16076960"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083035763","display_name":"Heebal Kim","orcid":"https://orcid.org/0000-0003-3064-1303"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Heebal Kim","raw_affiliation_strings":["Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea Department of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea heebal@snu.ac.kr","Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea","Department of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea Department of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea heebal@snu.ac.kr","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Interdisciplinary Program in Bioinformatics, Seoul National University, Kwan-ak St. 599, Kwan-ak Gu, Seoul, 151-741, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]},{"raw_affiliation_string":"Department of Agricultural Biotechnology, Seoul National University, Seoul 151-742, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5046843019"],"corresponding_institution_ids":["https://openalex.org/I16076960"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.1086,"has_fulltext":false,"cited_by_count":39,"citation_normalized_percentile":{"value":0.87434969,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"44","issue":"D1","first_page":"D610","last_page":"D619"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9695000052452087,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8477597236633301},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.775876522064209},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7272252440452576},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.7086480855941772},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6073122620582581},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5817382335662842},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5465405583381653},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.45307183265686035},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.4343253970146179},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37702107429504395},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3488743305206299},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.21181443333625793}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8477597236633301},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.775876522064209},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7272252440452576},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.7086480855941772},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6073122620582581},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5817382335662842},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5465405583381653},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.45307183265686035},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.4343253970146179},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37702107429504395},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3488743305206299},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21181443333625793},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012336","descriptor_name":"RNA, Ribosomal, 16S","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkv1245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1245","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D610/16661753/gkv1245.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26578597","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26578597","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.797.2145","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.797.2145","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/4a/0c/gkv1245.PMC4702880.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3680795","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4702880","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/D1/D610","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/D1/D610","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv1245","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1245","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D610/16661753/gkv1245.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321292","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W2174699197.pdf"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W113427216","https://openalex.org/W157609093","https://openalex.org/W1514768507","https://openalex.org/W1599377382","https://openalex.org/W1967172059","https://openalex.org/W1983084296","https://openalex.org/W1987862321","https://openalex.org/W2007447692","https://openalex.org/W2008252897","https://openalex.org/W2018665664","https://openalex.org/W2031611770","https://openalex.org/W2039158827","https://openalex.org/W2043602518","https://openalex.org/W2045843097","https://openalex.org/W2046039468","https://openalex.org/W2051870550","https://openalex.org/W2073261389","https://openalex.org/W2096525273","https://openalex.org/W2098558111","https://openalex.org/W2100091570","https://openalex.org/W2101465476","https://openalex.org/W2103784576","https://openalex.org/W2106265368","https://openalex.org/W2109028944","https://openalex.org/W2110014387","https://openalex.org/W2110667602","https://openalex.org/W2112956791","https://openalex.org/W2119490692","https://openalex.org/W2121166240","https://openalex.org/W2123305821","https://openalex.org/W2127322768","https://openalex.org/W2128769815","https://openalex.org/W2132023322","https://openalex.org/W2132318428","https://openalex.org/W2135410542","https://openalex.org/W2135415614","https://openalex.org/W2136632285","https://openalex.org/W2137084536","https://openalex.org/W2138166626","https://openalex.org/W2138952930","https://openalex.org/W2140031146","https://openalex.org/W2141885858","https://openalex.org/W2142678478","https://openalex.org/W2143907820","https://openalex.org/W2144454528","https://openalex.org/W2146622826","https://openalex.org/W2148231054","https://openalex.org/W2157701114","https://openalex.org/W2168696662","https://openalex.org/W2170748243","https://openalex.org/W4211022623","https://openalex.org/W4230073781","https://openalex.org/W4235121031","https://openalex.org/W4237629094","https://openalex.org/W4246548745","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W4254268221","https://openalex.org/W2951650999","https://openalex.org/W2038264393","https://openalex.org/W147282674","https://openalex.org/W2840568513","https://openalex.org/W2065083790","https://openalex.org/W2409815428","https://openalex.org/W2604174992","https://openalex.org/W2362218761","https://openalex.org/W2057191541"],"abstract_inverted_index":{"The":[0,48,111],"HGTree":[1,83],"database":[2,112],"provides":[3],"putative":[4],"genome-wide":[5],"horizontal":[6],"gene":[7,31],"transfer":[8],"(HGT)":[9],"information":[10,100],"for":[11,28,101],"2472":[12],"completely":[13],"sequenced":[14],"prokaryotic":[15],"genomes.":[16],"This":[17],"task":[18],"is":[19,52,74,113],"accomplished":[20],"by":[21],"reconstructing":[22],"approximate":[23],"maximum":[24],"likelihood":[25],"phylogenetic":[26],"trees":[27,44],"each":[29],"orthologous":[30],"and":[32,39,77,93,96,109,116,121],"corresponding":[33],"16S":[34],"rRNA":[35],"reference":[36],"species":[37],"sets":[38],"then":[40],"reconciling":[41],"the":[42,72,90,127],"two":[43],"under":[45],"parsimony":[46],"framework.":[47],"tree":[49],"reconciliation":[50],"method":[51,73],"generally":[53],"considered":[54],"to":[55,60,89,104,123],"be":[56,118],"a":[57,86],"reliable":[58],"way":[59],"detect":[61],"HGT":[62],"events":[63],"but":[64],"its":[65],"practical":[66],"use":[67],"has":[68],"remained":[69],"limited":[70],"because":[71],"computationally":[75],"intensive":[76],"conceptually":[78],"challenging.":[79],"In":[80],"this":[81],"regard,":[82],"(http://hgtree.snu.ac.kr)":[84],"represents":[85],"useful":[87],"addition":[88],"biological":[91],"community":[92],"enables":[94],"quick":[95],"easy":[97],"retrieval":[98],"of":[99],"HGT-acquired":[102],"genes":[103],"better":[105],"understand":[106],"microbial":[107],"taxonomy":[108],"evolution.":[110],"freely":[114],"available":[115],"can":[117],"easily":[119],"scaled":[120],"updated":[122],"keep":[124],"pace":[125],"with":[126],"rapid":[128],"rise":[129],"in":[130],"genomic":[131],"information.":[132]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-16T07:32:37.131356","created_date":"2025-10-10T00:00:00"}