{"id":"https://openalex.org/W2174759676","doi":"https://doi.org/10.1093/nar/gkv1229","title":"enviPath \u2013 The environmental contaminant biotransformation pathway resource","display_name":"enviPath \u2013 The environmental contaminant biotransformation pathway resource","publication_year":2015,"publication_date":"2015-11-17","ids":{"openalex":"https://openalex.org/W2174759676","doi":"https://doi.org/10.1093/nar/gkv1229","mag":"2174759676","pmid":"https://pubmed.ncbi.nlm.nih.gov/26582924"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv1229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1229","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D502/16661696/gkv1229.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/D1/D502/16661696/gkv1229.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079908211","display_name":"J\u00f6rg Wicker","orcid":"https://orcid.org/0000-0003-0533-3368"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"J\u00f6rg Wicker","raw_affiliation_strings":["Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany wicker@uni-mainz.de","Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany wicker@uni-mainz.de","institution_ids":["https://openalex.org/I197323543"]},{"raw_affiliation_string":"Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066956691","display_name":"Tim Lorsbach","orcid":null},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Lorsbach","raw_affiliation_strings":["Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065697003","display_name":"Martin G\u00fctlein","orcid":"https://orcid.org/0000-0003-2939-2469"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin G\u00fctlein","raw_affiliation_strings":["Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034987223","display_name":"Emanuel Schmid","orcid":"https://orcid.org/0000-0002-6814-7215"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Emanuel Schmid","raw_affiliation_strings":["Scientific IT Services, ETH Z\u00fcrich, Weinbergstrasse 11, 8092 Z\u00fcrich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Scientific IT Services, ETH Z\u00fcrich, Weinbergstrasse 11, 8092 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070180629","display_name":"Diogo A. R. S. Latino","orcid":"https://orcid.org/0000-0002-7622-3249"},"institutions":[{"id":"https://openalex.org/I63664421","display_name":"Swiss Federal Institute of Aquatic Science and Technology","ror":"https://ror.org/00pc48d59","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I63664421"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Diogo Latino","raw_affiliation_strings":["Department of Environmental Chemistry, Eawag, \u00dcberlandstrasse 133, 8600 D\u00fcbendorf, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Chemistry, Eawag, \u00dcberlandstrasse 133, 8600 D\u00fcbendorf, Switzerland","institution_ids":["https://openalex.org/I63664421"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102744434","display_name":"Stefan Kr\u00e4mer","orcid":"https://orcid.org/0000-0003-0136-2540"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Kramer","raw_affiliation_strings":["Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, Johannes Gutenberg University Mainz, Staudingerweg 9, 55128 Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044405346","display_name":"Kathrin Fenner","orcid":"https://orcid.org/0000-0001-6068-8220"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I63664421","display_name":"Swiss Federal Institute of Aquatic Science and Technology","ror":"https://ror.org/00pc48d59","country_code":"CH","type":"facility","lineage":["https://openalex.org/I2799323385","https://openalex.org/I63664421"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Kathrin Fenner","raw_affiliation_strings":["Department of Environmental Chemistry, Eawag, \u00dcberlandstrasse 133, 8600 D\u00fcbendorf, Switzerland Department of Environmental Systems Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland","Department of Environmental Systems Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland","Department of Environmental Chemistry, Eawag, \u00dcberlandstrasse 133, 8600 D\u00fcbendorf, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Environmental Chemistry, Eawag, \u00dcberlandstrasse 133, 8600 D\u00fcbendorf, Switzerland Department of Environmental Systems Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I63664421"]},{"raw_affiliation_string":"Department of Environmental Systems Science, ETH Z\u00fcrich, 8092 Z\u00fcrich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Department of Environmental Chemistry, Eawag, \u00dcberlandstrasse 133, 8600 D\u00fcbendorf, Switzerland","institution_ids":["https://openalex.org/I63664421"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5079908211"],"corresponding_institution_ids":["https://openalex.org/I197323543"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":2168,"currency":"EUR","value_usd":2338},"fwci":4.5479,"has_fulltext":true,"cited_by_count":203,"citation_normalized_percentile":{"value":0.95186029,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"44","issue":"D1","first_page":"D502","last_page":"D508"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10324","display_name":"Microbial bioremediation and biosurfactants","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10908","display_name":"Analytical Chemistry and Chromatography","score":0.9573000073432922,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9516000151634216,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biotransformation","display_name":"Biotransformation","score":0.8452435731887817},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.696810245513916},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5918561220169067},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5745404958724976},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5091654658317566},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4760558307170868},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.46956825256347656},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4585854709148407},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.3274519443511963},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1625310778617859},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.13136550784111023}],"concepts":[{"id":"https://openalex.org/C27881333","wikidata":"https://www.wikidata.org/wiki/Q864895","display_name":"Biotransformation","level":3,"score":0.8452435731887817},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.696810245513916},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5918561220169067},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5745404958724976},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5091654658317566},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4760558307170868},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.46956825256347656},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4585854709148407},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3274519443511963},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1625310778617859},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.13136550784111023},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001711","descriptor_name":"Biotransformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001711","descriptor_name":"Biotransformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001711","descriptor_name":"Biotransformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001711","descriptor_name":"Biotransformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004785","descriptor_name":"Environmental Pollutants","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015262","descriptor_name":"Xenobiotics","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkv1229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1229","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D502/16661696/gkv1229.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26582924","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26582924","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:dora:eawag_10415","is_oa":false,"landing_page_url":"https://www.dora.lib4ri.ch/eawag/islandora/object/eawag%3A10415","pdf_url":null,"source":{"id":"https://openalex.org/S4306400127","display_name":"DORA Eawag (Swiss Federal Institute of Aquatic Science and Technology (Eawag))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63664421","host_organization_name":"Swiss Federal Institute of Aquatic Science and Technology","host_organization_lineage":["https://openalex.org/I63664421"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:europepmc.org:3680784","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4702869","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/D1/D502","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/D1/D502","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/114221","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/114221","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 44 (D1)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.25504/fairsharing.g0c5qn","is_oa":true,"landing_page_url":"https://doi.org/10.25504/fairsharing.g0c5qn","pdf_url":null,"source":{"id":"https://openalex.org/S7407053452","display_name":"FAIRsharing.org","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"dataset"},{"id":"doi:10.3929/ethz-b-000114221","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000114221","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv1229","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1229","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D502/16661696/gkv1229.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.46000000834465027}],"awards":[{"id":"https://openalex.org/G1093674026","display_name":null,"funder_award_id":"agreement","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4247904154","display_name":null,"funder_award_id":"European Research Council","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G6613162707","display_name":"Predicting environment-specific biotransformation of chemical contaminants","funder_award_id":"614768","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G762232396","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8764753172","display_name":"Next-generation environmental biotransformation pathway prediction system \u2013 NGE-PPS","funder_award_id":"149711","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2174759676.pdf","grobid_xml":"https://content.openalex.org/works/W2174759676.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W55768394","https://openalex.org/W1981678895","https://openalex.org/W1997598914","https://openalex.org/W1997996256","https://openalex.org/W2031450906","https://openalex.org/W2047439324","https://openalex.org/W2086702971","https://openalex.org/W2096132672","https://openalex.org/W2097553713","https://openalex.org/W2118984103","https://openalex.org/W2121249519","https://openalex.org/W2131623463","https://openalex.org/W2131848047","https://openalex.org/W2139560025","https://openalex.org/W2145679532","https://openalex.org/W2153344191","https://openalex.org/W2159482845","https://openalex.org/W2162082704","https://openalex.org/W2174759676","https://openalex.org/W2178117785","https://openalex.org/W2746532990","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2363082983","https://openalex.org/W3004992272","https://openalex.org/W1790425259","https://openalex.org/W4240682630","https://openalex.org/W2002919907","https://openalex.org/W4252699916","https://openalex.org/W4226398544","https://openalex.org/W4383671535","https://openalex.org/W2373828514","https://openalex.org/W3136548765"],"abstract_inverted_index":{"The":[0],"University":[1],"of":[2,20,48,63,86,95,117],"Minnesota":[3],"Biocatalysis/Biodegradation":[4],"Database":[5],"and":[6,46,66,88,142],"Pathway":[7,39],"Prediction":[8],"System":[9],"(UM-BBD/PPS)":[10],"has":[11],"been":[12],"a":[13,43,58,110],"unique":[14],"resource":[15],"covering":[16],"microbial":[17],"biotransformation":[18],"pathways":[19],"primarily":[21],"xenobiotic":[22],"chemicals":[23],"for":[24,83],"over":[25],"15":[26],"years.":[27],"This":[28],"paper":[29],"introduces":[30],"the":[31,52,55,61,84,115],"successor":[32],"system,":[33],"enviPath":[34,50,118,134],"(The":[35],"Environmental":[36],"Contaminant":[37],"Biotransformation":[38],"Resource),":[40],"which":[41],"is":[42,81,106,125,135],"complete":[44],"redesign":[45],"reimplementation":[47],"UM-BBD/PPS.":[49],"uses":[51],"database":[53,124],"from":[54],"UM-BBD/PPS":[56],"as":[57],"basis,":[59],"extends":[60],"use":[62,77],"this":[64],"database,":[65],"allows":[67],"users":[68],"to":[69,74,89,127,145],"include":[70],"their":[71],"own":[72],"data":[73],"support":[75],"multiple":[76],"cases.":[78],"Relative":[79],"reasoning":[80],"supported":[82],"refinement":[85],"predictions":[87],"allow":[90],"its":[91,146],"extensions":[92],"in":[93],"terms":[94],"previously":[96],"published,":[97],"but":[98],"not":[99],"implemented":[100],"machine":[101],"learning":[102],"models.":[103],"User":[104],"access":[105,144],"simplified":[107],"by":[108],"providing":[109],"REST":[111],"API":[112],"that":[113],"simplifies":[114],"inclusion":[116],"into":[119],"existing":[120],"workflows.":[121],"An":[122],"RDF":[123],"used":[126],"enable":[128],"simple":[129],"integration":[130],"with":[131,140],"other":[132],"databases.":[133],"publicly":[136],"available":[137],"at":[138],"https://envipath.org":[139],"free":[141],"open":[143],"core":[147],"data.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":28},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":28},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":12},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2016-06-24T00:00:00"}