{"id":"https://openalex.org/W2128601422","doi":"https://doi.org/10.1093/nar/gkv1164","title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases","display_name":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases","publication_year":2015,"publication_date":"2015-11-02","ids":{"openalex":"https://openalex.org/W2128601422","doi":"https://doi.org/10.1093/nar/gkv1164","mag":"2128601422","pmid":"https://pubmed.ncbi.nlm.nih.gov/26527732"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkv1164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1164","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D471/9482795/gkv1164.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/44/D1/D471/9482795/gkv1164.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044919501","display_name":"Ron Caspi","orcid":"https://orcid.org/0000-0002-6113-3590"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ron Caspi","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006710775","display_name":"Richard Billington","orcid":"https://orcid.org/0000-0001-7288-8916"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Billington","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056267912","display_name":"Luciana Ferrer","orcid":"https://orcid.org/0000-0002-0426-8683"},"institutions":[{"id":"https://openalex.org/I24354313","display_name":"University of Buenos Aires","ror":"https://ror.org/0081fs513","country_code":"AR","type":"education","lineage":["https://openalex.org/I24354313"]},{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"funder","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Luciana Ferrer","raw_affiliation_strings":["FCEN, University of Buenos Aires and CONICET, Argentina"],"affiliations":[{"raw_affiliation_string":"FCEN, University of Buenos Aires and CONICET, Argentina","institution_ids":["https://openalex.org/I24354313","https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024708970","display_name":"Hartmut Foerster","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hartmut Foerster","raw_affiliation_strings":["Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA","Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY, 14853, USA"],"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY, 14853, USA","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110621263","display_name":"Carol A. Fulcher","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol A. Fulcher","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011903148","display_name":"Ingrid M. Keseler","orcid":"https://orcid.org/0000-0003-1738-6117"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ingrid M. Keseler","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047592210","display_name":"Anamika Kothari","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anamika Kothari","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007704760","display_name":"Markus Krummenacker","orcid":"https://orcid.org/0000-0002-2546-3007"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Markus Krummenacker","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053894822","display_name":"Mario Latendresse","orcid":"https://orcid.org/0000-0002-6292-0158"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mario Latendresse","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018498646","display_name":"Lukas A. Mueller","orcid":"https://orcid.org/0000-0001-8640-1750"},"institutions":[{"id":"https://openalex.org/I87424562","display_name":"Ithaca College","ror":"https://ror.org/01kw1gj07","country_code":"US","type":"education","lineage":["https://openalex.org/I87424562"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukas A. Mueller","raw_affiliation_strings":["Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA","Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY, 14853, USA"],"affiliations":[{"raw_affiliation_string":"Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY, 14853, USA","institution_ids":["https://openalex.org/I87424562","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044230509","display_name":"Quang Ong","orcid":"https://orcid.org/0000-0003-3490-3892"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quang Ong","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015212276","display_name":"Suzanne Paley","orcid":"https://orcid.org/0000-0001-5763-8935"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanne Paley","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016728461","display_name":"Pallavi Subhraveti","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pallavi Subhraveti","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091668355","display_name":"Daniel Weaver","orcid":"https://orcid.org/0000-0002-2906-3019"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel S. Weaver","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082071104","display_name":"Peter D. Karp","orcid":"https://orcid.org/0000-0002-5876-6418"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter D. Karp","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA pkarp@ai.sri.com","SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA pkarp@ai.sri.com","institution_ids":[]},{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA","institution_ids":["https://openalex.org/I1298353152"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5044919501"],"corresponding_institution_ids":["https://openalex.org/I1298353152"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":170.689,"has_fulltext":false,"cited_by_count":3476,"citation_normalized_percentile":{"value":0.99995136,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"44","issue":"D1","first_page":"D471","last_page":"D480"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.7723682522773743},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.7689871788024902},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.7506380677223206},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7160462141036987},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5846704840660095},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.5047129392623901},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49468204379081726},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48212504386901855},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.47831323742866516},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2991805970668793},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10676777362823486}],"concepts":[{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.7723682522773743},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.7689871788024902},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.7506380677223206},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7160462141036987},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5846704840660095},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.5047129392623901},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49468204379081726},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48212504386901855},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.47831323742866516},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2991805970668793},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10676777362823486}],"mesh":[{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004579","descriptor_name":"Electron Transport","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":11,"locations":[{"id":"doi:10.1093/nar/gkv1164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1164","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D471/9482795/gkv1164.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:26527732","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26527732","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.779.7527","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.779.7527","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/fa/b3/gkt1103.PMC3964957.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.800.9269","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.800.9269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/86/1e/gkv1164.PMC4702838.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.937.1283","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.937.1283","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2013/11/12/nar.gkt1103.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.941.4226","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.941.4226","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/42/D1/D459.full.pdf","raw_type":"text"},{"id":"pmh:oai:americanae.aecid.es:3888933","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3888933","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3680753","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4702838","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:44/D1/D471","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/44/D1/D471","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/85389","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/85389","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.60692/extfz-ns431","is_oa":true,"landing_page_url":"https://doi.org/10.60692/extfz-ns431","pdf_url":null,"source":{"id":"https://openalex.org/S7407051682","display_name":"Greater South Information System","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/nar/gkv1164","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkv1164","pdf_url":"https://academic.oup.com/nar/article-pdf/44/D1/D471/9482795/gkv1164.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.699999988079071}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128601422.pdf","grobid_xml":"https://content.openalex.org/works/W2128601422.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W399385914","https://openalex.org/W1603241183","https://openalex.org/W1966497610","https://openalex.org/W1991056282","https://openalex.org/W2002615469","https://openalex.org/W2014328192","https://openalex.org/W2042067428","https://openalex.org/W2044417671","https://openalex.org/W2048465561","https://openalex.org/W2058501095","https://openalex.org/W2070388085","https://openalex.org/W2082333984","https://openalex.org/W2083578450","https://openalex.org/W2094491295","https://openalex.org/W2094823810","https://openalex.org/W2095264477","https://openalex.org/W2096525273","https://openalex.org/W2099526830","https://openalex.org/W2103017472","https://openalex.org/W2106193566","https://openalex.org/W2106197985","https://openalex.org/W2108078368","https://openalex.org/W2110523405","https://openalex.org/W2110679449","https://openalex.org/W2111973517","https://openalex.org/W2122093325","https://openalex.org/W2124450302","https://openalex.org/W2128601422","https://openalex.org/W2131848047","https://openalex.org/W2133298156","https://openalex.org/W2134394193","https://openalex.org/W2136101247","https://openalex.org/W2137141752","https://openalex.org/W2137829494","https://openalex.org/W2139898508","https://openalex.org/W2140611297","https://openalex.org/W2141144953","https://openalex.org/W2143861551","https://openalex.org/W2148071771","https://openalex.org/W2149184205","https://openalex.org/W2149353640","https://openalex.org/W2155201905","https://openalex.org/W2155542617","https://openalex.org/W2158784643","https://openalex.org/W2168465568","https://openalex.org/W2435295041","https://openalex.org/W2482371382","https://openalex.org/W2528651403","https://openalex.org/W4230770774","https://openalex.org/W4236875018","https://openalex.org/W4237629094"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2258998699","https://openalex.org/W3013644380","https://openalex.org/W2074740504","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W1998405066","https://openalex.org/W2029483977"],"abstract_inverted_index":{"The":[0,20,89],"MetaCyc":[1,23,34,119],"database":[2,9],"(MetaCyc.org)":[3],"is":[4,45,55],"a":[5,56,93,146,176,180],"freely":[6],"accessible":[7],"comprehensive":[8],"describing":[10],"metabolic":[11,27,51,71,80],"pathways":[12,24,28,39],"and":[13,44,69,86,99,105,120,136,175,179],"enzymes":[14],"from":[15,41],"all":[16],"domains":[17],"of":[18,22,50,58,73,95,115,129,139,145],"life.":[19],"majority":[21],"are":[25],"small-molecule":[26],"that":[29],"have":[30],"been":[31],"experimentally":[32],"determined.":[33],"contains":[35],"more":[36],"than":[37],"2400":[38],"derived":[40],">46,000":[42],"publications,":[43],"the":[46,66,123,140],"largest":[47],"curated":[48],"collection":[49,57],"pathways.":[52],"BioCyc":[53,90,121],"(BioCyc.org)":[54],"5700":[59],"organism-specific":[60],"Pathway/Genome":[61],"Databases":[62],"(PGDBs),":[63],"each":[64],"containing":[65,151],"full":[67],"genome":[68],"predicted":[70,82],"network":[72],"one":[74],"organism,":[75],"including":[76,102,127,159],"metabolites,":[77],"enzymes,":[78],"reactions,":[79],"pathways,":[81],"operons,":[83],"transport":[84],"systems,":[85],"pathway-hole":[87],"fillers.":[88],"website":[91],"offers":[92],"variety":[94],"tools":[96,106],"for":[97,107,134,148,161,168],"querying":[98],"analyzing":[100],"PGDBs,":[101],"Omics":[103],"Viewers":[104],"comparative":[108],"analysis.":[109],"This":[110],"article":[111],"provides":[112],"an":[113,172],"update":[114],"new":[116,156],"developments":[117],"in":[118],"during":[122],"last":[124],"two":[125],"years,":[126],"addition":[128,144],"Gibbs":[130],"free":[131],"energy":[132],"values":[133],"compounds":[135],"reactions;":[137],"redesign":[138],"primary":[141],"gene/protein":[142],"page;":[143],"tool":[147],"creating":[149],"diagrams":[150],"multiple":[152],"linked":[153],"pathways;":[154],"several":[155],"search":[157],"capabilities,":[158],"searching":[160,167],"genes":[162],"based":[163,170],"on":[164,171],"sequence":[165],"patterns,":[166],"databases":[169],"organism's":[173],"phenotypes,":[174],"cross-organism":[177],"search;":[178],"metabolite":[181],"identifier":[182],"translation":[183],"service.":[184]},"counts_by_year":[{"year":2026,"cited_by_count":17},{"year":2025,"cited_by_count":111},{"year":2024,"cited_by_count":195},{"year":2023,"cited_by_count":174},{"year":2022,"cited_by_count":175},{"year":2021,"cited_by_count":222},{"year":2020,"cited_by_count":256},{"year":2019,"cited_by_count":257},{"year":2018,"cited_by_count":302},{"year":2017,"cited_by_count":320},{"year":2016,"cited_by_count":255},{"year":2015,"cited_by_count":253},{"year":2014,"cited_by_count":222},{"year":2013,"cited_by_count":193},{"year":2012,"cited_by_count":151}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
