{"id":"https://openalex.org/W2001297798","doi":"https://doi.org/10.1093/nar/gku982","title":"MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins","display_name":"MobiDB 2.0: an improved database of intrinsically disordered and mobile proteins","publication_year":2014,"publication_date":"2014-10-31","ids":{"openalex":"https://openalex.org/W2001297798","doi":"https://doi.org/10.1093/nar/gku982","mag":"2001297798","pmid":"https://pubmed.ncbi.nlm.nih.gov/25361972"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku982","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku982","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D315/17438340/gku982.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/D1/D315/17438340/gku982.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002285840","display_name":"Emilio Potenza","orcid":"https://orcid.org/0000-0002-8346-2432"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Emilio Potenza","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047166754","display_name":"Tom\u00e1s Di Domenico","orcid":"https://orcid.org/0000-0003-2887-815X"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tom\u00e1s Di Domenico","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060625212","display_name":"Ian Walsh","orcid":"https://orcid.org/0000-0003-3994-5522"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ian Walsh","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066560665","display_name":"Silvio C. E. Tosatto","orcid":"https://orcid.org/0000-0003-4525-7793"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvio C.E. Tosatto","raw_affiliation_strings":["Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy silvio.tosatto@unipd.it"],"raw_orcid":"https://orcid.org/0000-0003-4525-7793","affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy silvio.tosatto@unipd.it","institution_ids":["https://openalex.org/I138689650"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":14.6596,"has_fulltext":true,"cited_by_count":195,"citation_normalized_percentile":{"value":0.9938525,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"43","issue":"D1","first_page":"D315","last_page":"D320"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9732999801635742,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8906856775283813},{"id":"https://openalex.org/keywords/intrinsically-disordered-proteins","display_name":"Intrinsically disordered proteins","score":0.8037084341049194},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6455330848693848},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5585592985153198},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5064777135848999},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4684681296348572},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.46605902910232544},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4284853935241699},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.386627733707428},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2975437045097351},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.12917006015777588}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8906856775283813},{"id":"https://openalex.org/C2778815515","wikidata":"https://www.wikidata.org/wiki/Q3408242","display_name":"Intrinsically disordered proteins","level":2,"score":0.8037084341049194},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6455330848693848},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5585592985153198},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5064777135848999},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4684681296348572},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.46605902910232544},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4284853935241699},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.386627733707428},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2975437045097351},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.12917006015777588},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D064267","descriptor_name":"Intrinsically Disordered Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gku982","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku982","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D315/17438340/gku982.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25361972","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25361972","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3354977","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4384034","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.812.8318","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.812.8318","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/e1/f7/gku982.PMC4384034.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.839.7822","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.839.7822","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2014/10/31/nar.gku982.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.861.2276","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.861.2276","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/43/D1/D315.full.pdf","raw_type":"text"},{"id":"pmh:oai:www.research.unipd.it:11577/3158200","is_oa":true,"landing_page_url":"http://hdl.handle.net/11577/3158200","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gku982","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku982","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D315/17438340/gku982.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G445724114","display_name":null,"funder_award_id":"MFAG 12740","funder_id":"https://openalex.org/F4320323054","funder_display_name":"Associazione Italiana per la Ricerca sul Cancro"}],"funders":[{"id":"https://openalex.org/F4320323054","display_name":"Associazione Italiana per la Ricerca sul Cancro","ror":"https://ror.org/02g2x7380"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2001297798.pdf","grobid_xml":"https://content.openalex.org/works/W2001297798.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1554017431","https://openalex.org/W1763894483","https://openalex.org/W1792685479","https://openalex.org/W1971449260","https://openalex.org/W1994840640","https://openalex.org/W2006505144","https://openalex.org/W2008332643","https://openalex.org/W2008708467","https://openalex.org/W2014776147","https://openalex.org/W2030776726","https://openalex.org/W2042705901","https://openalex.org/W2049476357","https://openalex.org/W2051119339","https://openalex.org/W2055193239","https://openalex.org/W2080831965","https://openalex.org/W2105629164","https://openalex.org/W2105924489","https://openalex.org/W2120881407","https://openalex.org/W2121265934","https://openalex.org/W2124879102","https://openalex.org/W2139968942","https://openalex.org/W2143370123","https://openalex.org/W2144252381","https://openalex.org/W2146637813","https://openalex.org/W2147526198","https://openalex.org/W2149472608","https://openalex.org/W2153745204","https://openalex.org/W2156465034","https://openalex.org/W2156678798","https://openalex.org/W2161199282","https://openalex.org/W2168708922","https://openalex.org/W2170463736","https://openalex.org/W2170563234","https://openalex.org/W2605068739","https://openalex.org/W4247554111","https://openalex.org/W6637960051","https://openalex.org/W6675881878"],"related_works":["https://openalex.org/W2162388472","https://openalex.org/W2102027645","https://openalex.org/W2107785922","https://openalex.org/W2059359052","https://openalex.org/W3181892255","https://openalex.org/W2035528219","https://openalex.org/W3132544722","https://openalex.org/W2604763988","https://openalex.org/W4232154957","https://openalex.org/W2103435205"],"abstract_inverted_index":{"MobiDB":[0,111,146],"(http://mobidb.bio.unipd.it/)":[1],"is":[2,71,79],"a":[3,25,30,130],"database":[4,57,157],"of":[5,19,28,43,61,89,121],"intrinsically":[6],"disordered":[7,12,137],"and":[8,66,108,133,161,171],"mobile":[9],"proteins.":[10,21],"Intrinsically":[11],"regions":[13],"are":[14,85,166,172,191],"key":[15],"for":[16,116,135,183,194],"the":[17,36,74,143,155,175,179],"function":[18],"numerous":[20],"Here":[22],"we":[23],"provide":[24,113],"new":[26,126],"version":[27,127],"MobiDB,":[29],"centralized":[31],"source":[32],"aimed":[33],"at":[34],"providing":[35],"most":[37],"complete":[38],"picture":[39],"on":[40],"different":[41],"flavors":[42],"disorder":[44,114,144,195],"in":[45,119,168],"protein":[46,118],"structures":[47,83],"covering":[48],"all":[49],"UniProt":[50,156],"sequences":[51],"(currently":[52],"over":[53],"80":[54],"million).":[55],"The":[56,92,125],"features":[58,129,147],"three":[59],"levels":[60],"annotation:":[62],"manually":[63],"curated,":[64],"indirect":[65],"predicted.":[67],"Manually":[68],"curated":[69],"data":[70,78],"extracted":[72],"from":[73,81,150,154,189],"DisProt":[75],"database.":[76],"Indirect":[77],"inferred":[80],"PDB":[82],"that":[84],"considered":[86],"an":[87],"indication":[88],"intrinsic":[90],"disorder.":[91],"10":[93],"predictors":[94],"currently":[95],"included":[96],"(three":[97],"ESpritz":[98],"flavors,":[99,102,105],"two":[100,103],"IUPred":[101],"DisEMBL":[104],"GlobPlot,":[106],"VSL2b":[107],"JRONN)":[109],"enable":[110],"to":[112,141,177],"annotations":[115,149,165],"every":[117],"absence":[120],"more":[122],"reliable":[123],"data.":[124],"also":[128,192],"consensus":[131],"annotation":[132],"classification":[134],"long":[136],"regions.":[138],"In":[139],"order":[140],"complement":[142],"annotations,":[145],"additional":[148],"external":[151],"sources.":[152],"Annotations":[153],"include":[158],"post-translational":[159],"modifications":[160],"linear":[162],"motifs.":[163],"Pfam":[164,181],"displayed":[167],"graphical":[169],"form":[170],"link-enabled,":[173],"allowing":[174],"user":[176],"visit":[178],"corresponding":[180],"page":[182],"further":[184],"information.":[185],"Experimental":[186],"protein-protein":[187],"interactions":[188],"STRING":[190],"classified":[193],"content.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":19},{"year":2018,"cited_by_count":21},{"year":2017,"cited_by_count":37},{"year":2016,"cited_by_count":41},{"year":2015,"cited_by_count":25}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
