{"id":"https://openalex.org/W2047423056","doi":"https://doi.org/10.1093/nar/gku946","title":"EzCatDB: the enzyme reaction database, 2015 update","display_name":"EzCatDB: the enzyme reaction database, 2015 update","publication_year":2014,"publication_date":"2014-10-16","ids":{"openalex":"https://openalex.org/W2047423056","doi":"https://doi.org/10.1093/nar/gku946","mag":"2047423056","pmid":"https://pubmed.ncbi.nlm.nih.gov/25324316"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku946","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku946","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D453/7330572/gku946.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/D1/D453/7330572/gku946.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050276031","display_name":"Nozomi Nagano","orcid":"https://orcid.org/0000-0002-2779-685X"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Nozomi Nagano","raw_affiliation_strings":["Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan n.nagano@aist.go.jp","Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan n.nagano@aist.go.jp","institution_ids":["https://openalex.org/I73613424"]},{"raw_affiliation_string":"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025049949","display_name":"Naoko Nakayama","orcid":null},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Naoko Nakayama","raw_affiliation_strings":["Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038763185","display_name":"Kazuyoshi Ikeda","orcid":"https://orcid.org/0000-0002-8433-8206"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kazuyoshi Ikeda","raw_affiliation_strings":["Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043977153","display_name":"Masaru Fukuie","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Masaru Fukuie","raw_affiliation_strings":["Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111862715","display_name":"Kiyonobu Yokota","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kiyonobu Yokota","raw_affiliation_strings":["Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001436427","display_name":"Takuo Doi","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Takuo Doi","raw_affiliation_strings":["Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Level Five Co. Ltd., Grove Tower 4112, 4-21-1, Shibaura, Minato-ku, Tokyo 108-0023, Japan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031832499","display_name":"Tsuyoshi Kato","orcid":"https://orcid.org/0000-0001-5311-4966"},"institutions":[{"id":"https://openalex.org/I114030911","display_name":"Otsuka (Japan)","ror":"https://ror.org/013k5y296","country_code":"JP","type":"company","lineage":["https://openalex.org/I114030911"]},{"id":"https://openalex.org/I165735259","display_name":"Gunma University","ror":"https://ror.org/046fm7598","country_code":"JP","type":"education","lineage":["https://openalex.org/I165735259"]},{"id":"https://openalex.org/I26120043","display_name":"Ochanomizu University","ror":"https://ror.org/03599d813","country_code":"JP","type":"education","lineage":["https://openalex.org/I26120043"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tsuyoshi Kato","raw_affiliation_strings":["Faculty of Science and Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan Center for Informational Biology, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan","Center for Informational Biology, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan","Faculty of Science and Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science and Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan Center for Informational Biology, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan","institution_ids":["https://openalex.org/I26120043","https://openalex.org/I165735259"]},{"raw_affiliation_string":"Center for Informational Biology, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan","institution_ids":["https://openalex.org/I26120043","https://openalex.org/I114030911"]},{"raw_affiliation_string":"Faculty of Science and Engineering, Gunma University, 1-5-1 Tenjin-cho, Kiryu, Gunma 376-8515, Japan","institution_ids":["https://openalex.org/I165735259"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074475230","display_name":"Kentaro Tomii","orcid":"https://orcid.org/0000-0002-4567-4768"},"institutions":[{"id":"https://openalex.org/I73613424","display_name":"National Institute of Advanced Industrial Science and Technology","ror":"https://ror.org/01703db54","country_code":"JP","type":"government","lineage":["https://openalex.org/I73613424"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kentaro Tomii","raw_affiliation_strings":["Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), Tokyo Waterfront Bio-IT Research Building, 2-4-7 Aomi, Koto-ku, Tokyo 135-0064, Japan","institution_ids":["https://openalex.org/I73613424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5050276031"],"corresponding_institution_ids":["https://openalex.org/I73613424"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.9958,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.75063058,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"43","issue":"D1","first_page":"D453","last_page":"D458"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.8610409498214722},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.7401573061943054},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6679257154464722},{"id":"https://openalex.org/keywords/active-site","display_name":"Active site","score":0.5930919647216797},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5541471838951111},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.42564883828163147},{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.4127592444419861},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.39999932050704956},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35895609855651855},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2702926695346832},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.24177831411361694}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8610409498214722},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.7401573061943054},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6679257154464722},{"id":"https://openalex.org/C41183919","wikidata":"https://www.wikidata.org/wiki/Q423026","display_name":"Active site","level":3,"score":0.5930919647216797},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5541471838951111},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.42564883828163147},{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.4127592444419861},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.39999932050704956},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35895609855651855},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2702926695346832},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.24177831411361694},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055162","descriptor_name":"Biocatalysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gku946","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku946","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D453/7330572/gku946.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25324316","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25324316","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3354960","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4384017","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku946","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku946","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D453/7330572/gku946.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320324004","display_name":"Forskningsr\u00e5det om H\u00e4lsa, Arbetsliv och V\u00e4lf\u00e4rd","ror":"https://ror.org/02d290r06"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W217834111","https://openalex.org/W1553467402","https://openalex.org/W1969142598","https://openalex.org/W1987819535","https://openalex.org/W2016088798","https://openalex.org/W2026258231","https://openalex.org/W2055043387","https://openalex.org/W2076568372","https://openalex.org/W2082332011","https://openalex.org/W2098770192","https://openalex.org/W2104295259","https://openalex.org/W2106383137","https://openalex.org/W2108923073","https://openalex.org/W2109806386","https://openalex.org/W2110679449","https://openalex.org/W2113014507","https://openalex.org/W2122559203","https://openalex.org/W2131848047","https://openalex.org/W2133637723","https://openalex.org/W2140808721","https://openalex.org/W2142113273","https://openalex.org/W2143210482","https://openalex.org/W2145661853","https://openalex.org/W2158714788","https://openalex.org/W2162923930","https://openalex.org/W2168708922","https://openalex.org/W2605068739","https://openalex.org/W4240895940","https://openalex.org/W4247554111","https://openalex.org/W6633184105","https://openalex.org/W6822430352"],"related_works":["https://openalex.org/W3181892255","https://openalex.org/W3132544722","https://openalex.org/W4232154957","https://openalex.org/W4292058683","https://openalex.org/W4376646754","https://openalex.org/W4307362031","https://openalex.org/W4389222350","https://openalex.org/W2022209941","https://openalex.org/W4205671017","https://openalex.org/W4375844720"],"abstract_inverted_index":{"The":[0,105],"EzCatDB":[1,134],"database":[2,66,101],"(http://ezcatdb.cbrc.jp/EzCatDB/)":[3],"has":[4],"emphasized":[5],"manual":[6],"classification":[7],"of":[8,14,29,84,108,127],"enzyme":[9,15,75],"reactions":[10],"from":[11,37],"the":[12,33,38,61,74,78,96,100,133,146,159],"viewpoints":[13],"active-site":[16,177],"structures":[17,36,76,107,178],"and":[18,32,54,88,137],"their":[19],"catalytic":[20,97],"mechanisms":[21],"based":[22],"on":[23,73],"literature":[24],"information,":[25],"amino":[26],"acid":[27],"sequences":[28],"enzymes":[30],"(UniProtKB)":[31],"corresponding":[34],"tertiary":[35],"Protein":[39],"Data":[40],"Bank":[41],"(PDB).":[42],"Reaction":[43],"types":[44,129],"such":[45],"as":[46],"hydrolysis,":[47],"transfer,":[48],"addition,":[49],"elimination,":[50],"isomerization,":[51],"hydride":[52],"transfer":[53,56],"electron":[55],"have":[57],"been":[58],"included":[59],"in":[60,77,82,179],"reaction":[62],"classification,":[63],"RLCP.":[64],"This":[65],"includes":[67],"information":[68],"related":[69],"to":[70,94,173],"ligand":[71],"molecules":[72],"PDB":[79,113],"data,":[80],"classified":[81],"terms":[83],"cofactors,":[85],"substrates,":[86],"products":[87],"intermediates,":[89],"which":[90,182],"are":[91],"also":[92,171],"necessary":[93],"elucidate":[95],"mechanisms.":[98],"Recently,":[99],"system":[102],"was":[103],"updated.":[104],"3D":[106],"active":[109],"sites":[110],"for":[111,132,142,154,161,175,181],"each":[112],"entry":[114],"can":[115,185],"be":[116,186],"viewed":[117],"using":[118],"Jmol":[119],"or":[120],"Rasmol":[121],"software.":[122,166],"Moreover,":[123],"sequence":[124],"search":[125],"systems":[126],"two":[128],"were":[130],"developed":[131],"database:":[135],"EzCat-BLAST":[136,139],"EzCat-FORTE.":[138],"is":[140,151,170],"suitable":[141,153],"quick":[143],"searches,":[144],"adopting":[145,158],"BLAST":[147],"algorithm,":[148],"whereas":[149],"EzCat-FORTE":[150],"more":[152],"detecting":[155],"remote":[156],"homologues,":[157],"algorithm":[160],"FORTE":[162],"protein":[163],"structure":[164],"prediction":[165],"Another":[167],"system,":[168],"EzMetAct,":[169],"available":[172],"searching":[174],"major":[176],"EzCatDB,":[180],"PDB-formatted":[183],"queries":[184],"searched.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
