{"id":"https://openalex.org/W1980969309","doi":"https://doi.org/10.1093/nar/gku928","title":"sc-PDB: a 3D-database of ligandable binding sites\u201410 years on","display_name":"sc-PDB: a 3D-database of ligandable binding sites\u201410 years on","publication_year":2014,"publication_date":"2014-10-09","ids":{"openalex":"https://openalex.org/W1980969309","doi":"https://doi.org/10.1093/nar/gku928","mag":"1980969309","pmid":"https://pubmed.ncbi.nlm.nih.gov/25300483"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku928","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku928","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D399/17438022/gku928.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/D1/D399/17438022/gku928.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090712916","display_name":"J\u00e9r\u00e9my Desaphy","orcid":"https://orcid.org/0000-0002-6860-0825"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"J\u00e9r\u00e9my Desaphy","raw_affiliation_strings":["Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077272199","display_name":"Guillaume Bret","orcid":"https://orcid.org/0000-0001-5434-0906"},"institutions":[{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Bret","raw_affiliation_strings":["Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037175705","display_name":"Didier Rognan","orcid":"https://orcid.org/0000-0002-0577-641X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Didier Rognan","raw_affiliation_strings":["Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005741666","display_name":"Esther Kellenberger","orcid":"https://orcid.org/0000-0002-9320-4840"},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210116974","display_name":"Laboratoire d'Innovation Th\u00e9rapeutique","ror":"https://ror.org/02g4mxc89","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I4210128300","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Esther Kellenberger","raw_affiliation_strings":["Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France ekellen@unistra.fr","Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France ekellen@unistra.fr","institution_ids":[]},{"raw_affiliation_string":"Laboratoire d'innovation th\u00e9rapeutique, Medalis Drug Discovery Center, UMR7200 CNRS-Universit\u00e9 de Strasbourg, F-67400 Illkirch, France","institution_ids":["https://openalex.org/I4210116974","https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5090712916"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210116974","https://openalex.org/I68947357"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.3053,"has_fulltext":true,"cited_by_count":316,"citation_normalized_percentile":{"value":0.98615825,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"43","issue":"D1","first_page":"D399","last_page":"D404"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.9234800934791565},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.7863793969154358},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6002752780914307},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.599635124206543},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5635818243026733},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.5315582156181335},{"id":"https://openalex.org/keywords/ligand","display_name":"Ligand (biochemistry)","score":0.48647043108940125},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4697354733943939},{"id":"https://openalex.org/keywords/protein-ligand","display_name":"Protein ligand","score":0.41315293312072754},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3889908194541931},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.36461207270622253},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2613843083381653},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2019236981868744},{"id":"https://openalex.org/keywords/receptor","display_name":"Receptor","score":0.0825396180152893}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9234800934791565},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.7863793969154358},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6002752780914307},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.599635124206543},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5635818243026733},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.5315582156181335},{"id":"https://openalex.org/C116569031","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Ligand (biochemistry)","level":3,"score":0.48647043108940125},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4697354733943939},{"id":"https://openalex.org/C109095088","wikidata":"https://www.wikidata.org/wiki/Q899107","display_name":"Protein ligand","level":2,"score":0.41315293312072754},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3889908194541931},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.36461207270622253},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2613843083381653},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2019236981868744},{"id":"https://openalex.org/C170493617","wikidata":"https://www.wikidata.org/wiki/Q208467","display_name":"Receptor","level":2,"score":0.0825396180152893},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015195","descriptor_name":"Drug Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gku928","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku928","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D399/17438022/gku928.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25300483","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25300483","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-03228206v1","is_oa":true,"landing_page_url":"https://hal.science/hal-03228206","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2015, 43 (D1), pp.D399-D404. &#x27E8;10.1093/nar/gku928&#x27E9;","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:3354955","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4384012","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku928","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku928","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D399/17438022/gku928.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2611766379","display_name":null,"funder_award_id":"ANR-10-LABX-0034","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G2754493927","display_name":null,"funder_award_id":"ANR-10-LABX-0034","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5549440890","display_name":null,"funder_award_id":"ANR-10-LAB","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5640121800","display_name":null,"funder_award_id":"(CNRS)","funder_id":"https://openalex.org/F4320322892","funder_display_name":"Centre National de la Recherche Scientifique"},{"id":"https://openalex.org/G6684833484","display_name":null,"funder_award_id":"LABEX ANR-10-LABX-0034_Medalis","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8122494232","display_name":null,"funder_award_id":"ANR_10-LABX-0034","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G8917127843","display_name":null,"funder_award_id":"LABEX","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322147","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1980969309.pdf","grobid_xml":"https://content.openalex.org/works/W1980969309.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1572961809","https://openalex.org/W1979914800","https://openalex.org/W1980337077","https://openalex.org/W1982030445","https://openalex.org/W1983815352","https://openalex.org/W1997503626","https://openalex.org/W1997655258","https://openalex.org/W1998948060","https://openalex.org/W1999318478","https://openalex.org/W2030753552","https://openalex.org/W2032426558","https://openalex.org/W2036884070","https://openalex.org/W2039127550","https://openalex.org/W2041877730","https://openalex.org/W2067116292","https://openalex.org/W2074370114","https://openalex.org/W2100598991","https://openalex.org/W2109872885","https://openalex.org/W2119470100","https://openalex.org/W2139362074","https://openalex.org/W2150556577","https://openalex.org/W2159275700","https://openalex.org/W2171681733","https://openalex.org/W2318311899","https://openalex.org/W2402506318","https://openalex.org/W2605068739","https://openalex.org/W4234914623","https://openalex.org/W4247554111","https://openalex.org/W6712849792"],"related_works":["https://openalex.org/W585106548","https://openalex.org/W2605185882","https://openalex.org/W3126783617","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W4353055924","https://openalex.org/W2806488847","https://openalex.org/W2121688928","https://openalex.org/W4387033830","https://openalex.org/W3013529667"],"abstract_inverted_index":{"The":[0,33,67,150],"sc-PDB":[1,53,68],"database":[2,34,69],"(available":[3],"at":[4],"http://bioinfo-pharma.u-strasbg.fr/scPDB/)":[5],"is":[6],"a":[7,27,30],"comprehensive":[8],"and":[9,29,47,63,100,116,119,142],"up-to-date":[10],"selection":[11],"of":[12,16,39,78,139,158],"ligandable":[13],"binding":[14,45,49,57,107,123,148],"sites":[15,58],"the":[17,36,40,52,76,93,102,128,132,137,144],"Protein":[18],"Data":[19],"Bank.":[20],"Sites":[21],"are":[22],"defined":[23],"from":[24,59],"complexes":[25],"between":[26,146],"protein":[28,114],"pharmacological":[31],"ligand.":[32],"provides":[35],"all-atom":[37],"description":[38],"protein,":[41],"its":[42],"ligand,":[43],"their":[44,48,122],"site":[46],"mode.":[50,124],"Currently,":[51],"archive":[54],"registers":[55],"9283":[56],"3678":[60],"unique":[61,65],"proteins":[62],"5608":[64],"ligands.":[66],"was":[70],"publicly":[71],"launched":[72],"in":[73,131,155],"2004":[74],"with":[75],"aim":[77],"providing":[79],"structure":[80],"files":[81],"suitable":[82],"for":[83,104],"computational":[84],"approaches":[85],"to":[86,136,143],"drug":[87],"design,":[88],"such":[89],"as":[90],"docking.":[91],"During":[92],"last":[94],"10":[95],"years":[96],"we":[97],"have":[98],"improved":[99],"standardized":[101],"processes":[103],"(i)":[105],"identifying":[106],"sites,":[108],"(ii)":[109],"correcting":[110],"structures,":[111],"(iii)":[112],"annotating":[113],"function":[115],"ligand":[117],"properties":[118],"(iv)":[120],"characterizing":[121],"This":[125],"paper":[126],"presents":[127],"latest":[129],"enhancements":[130],"database,":[133],"specifically":[134],"pertaining":[135],"representation":[138],"molecular":[140],"interaction":[141],"similarity":[145],"ligand/protein":[147],"patterns.":[149],"new":[151],"website":[152],"puts":[153],"emphasis":[154],"pictorial":[156],"analysis":[157],"data.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":33},{"year":2024,"cited_by_count":60},{"year":2023,"cited_by_count":31},{"year":2022,"cited_by_count":39},{"year":2021,"cited_by_count":45},{"year":2020,"cited_by_count":33},{"year":2019,"cited_by_count":26},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":13},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":5}],"updated_date":"2026-03-26T15:22:09.906841","created_date":"2025-10-10T00:00:00"}
