{"id":"https://openalex.org/W2165439432","doi":"https://doi.org/10.1093/nar/gku443","title":"NetworkAnalyst - integrative approaches for protein\u2013protein interaction network analysis and visual exploration","display_name":"NetworkAnalyst - integrative approaches for protein\u2013protein interaction network analysis and visual exploration","publication_year":2014,"publication_date":"2014-05-26","ids":{"openalex":"https://openalex.org/W2165439432","doi":"https://doi.org/10.1093/nar/gku443","mag":"2165439432","pmid":"https://pubmed.ncbi.nlm.nih.gov/24861621"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku443","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gku443","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073663029","display_name":"Jianguo Xia","orcid":"https://orcid.org/0000-0003-2040-2624"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210165024","display_name":"Institute of Infection and Immunity","ror":"https://ror.org/05wdecy17","country_code":"CA","type":"facility","lineage":["https://openalex.org/I176337269","https://openalex.org/I4210165024"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Jianguo Xia","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada","Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada and","Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada and","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210165024"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada,","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064329051","display_name":"Maia J. Benner","orcid":null},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I4210165024","display_name":"Institute of Infection and Immunity","ror":"https://ror.org/05wdecy17","country_code":"CA","type":"facility","lineage":["https://openalex.org/I176337269","https://openalex.org/I4210165024"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Maia J. Benner","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada","Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada and","Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada and","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210165024"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada,","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066530115","display_name":"Robert E. W. Hancock","orcid":"https://orcid.org/0000-0001-5989-8503"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I4210165024","display_name":"Institute of Infection and Immunity","ror":"https://ror.org/05wdecy17","country_code":"CA","type":"facility","lineage":["https://openalex.org/I176337269","https://openalex.org/I4210165024"]}],"countries":["CA","GB"],"is_corresponding":false,"raw_author_name":"Robert E. W. Hancock","raw_affiliation_strings":["Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada Wellcome Trust Sanger Institute, Hinxton, United Kingdom bob@cmdr.ubc.ca","Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada and","Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada,","Wellcome Trust Sanger Institute, Hinxton, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada Wellcome Trust Sanger Institute, Hinxton, United Kingdom bob@cmdr.ubc.ca","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, Canada and","institution_ids":["https://openalex.org/I141945490","https://openalex.org/I4210165024"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of British Columbia, Vancouver, Canada,","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Hinxton, United Kingdom","institution_ids":["https://openalex.org/I2802476451"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.9157,"has_fulltext":false,"cited_by_count":473,"citation_normalized_percentile":{"value":0.99056759,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"42","issue":"W1","first_page":"W167","last_page":"W174"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9815999865531921,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.67740797996521},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6415416598320007},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6319337487220764},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.6121887564659119},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.5935328602790833},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.575423538684845},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5472944378852844},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.5020923614501953},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4625868499279022},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.44797366857528687},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.44797247648239136},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4387701749801636},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.4125874936580658},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3572801649570465},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35327500104904175},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.30900436639785767},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23452338576316833},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21263155341148376},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17162936925888062},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.11913391947746277},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08917176723480225}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.67740797996521},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6415416598320007},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6319337487220764},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.6121887564659119},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.5935328602790833},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.575423538684845},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5472944378852844},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.5020923614501953},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4625868499279022},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.44797366857528687},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.44797247648239136},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4387701749801636},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.4125874936580658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3572801649570465},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35327500104904175},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.30900436639785767},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23452338576316833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21263155341148376},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17162936925888062},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.11913391947746277},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08917176723480225},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gku443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku443","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24861621","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24861621","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3176840","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086107","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:escholarship.mcgill.ca:41687p475","is_oa":false,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/41687p475","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/42/W1/W167/2437779","raw_type":"Article"},{"id":"pmh:oai:escholarship.mcgill.ca:nc580s44v","is_oa":true,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/nc580s44v","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://doi.org/10.1093/nar/gku443.","raw_type":"Article"},{"id":"pmh:oai:escholarship.mcgill.ca:rj430966n","is_oa":false,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/rj430966n","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/42/W1/W167/2437779","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1093/nar/gku443","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku443","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7211217049","display_name":"Design and Function of Antimicrobial and IDR Peptides","funder_award_id":"74493_3","funder_id":"https://openalex.org/F4320334506","funder_display_name":"Canadian Institutes of Health Research"}],"funders":[{"id":"https://openalex.org/F4320319899","display_name":"Cystic Fibrosis Canada","ror":"https://ror.org/05b6dcx13"},{"id":"https://openalex.org/F4320322337","display_name":"Killam Trusts","ror":"https://ror.org/021cbtn85"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1546952499","https://openalex.org/W1876024155","https://openalex.org/W1977236339","https://openalex.org/W1988047583","https://openalex.org/W1995683190","https://openalex.org/W1998712640","https://openalex.org/W2000860171","https://openalex.org/W2003516452","https://openalex.org/W2012852001","https://openalex.org/W2043764521","https://openalex.org/W2052685738","https://openalex.org/W2066447707","https://openalex.org/W2095867585","https://openalex.org/W2098509290","https://openalex.org/W2099131261","https://openalex.org/W2099982459","https://openalex.org/W2105924489","https://openalex.org/W2110350344","https://openalex.org/W2110687686","https://openalex.org/W2112811019","https://openalex.org/W2116343015","https://openalex.org/W2116531018","https://openalex.org/W2117405098","https://openalex.org/W2130324133","https://openalex.org/W2130410032","https://openalex.org/W2130687290","https://openalex.org/W2132034930","https://openalex.org/W2135607659","https://openalex.org/W2136850043","https://openalex.org/W2137531873","https://openalex.org/W2138255346","https://openalex.org/W2144145301","https://openalex.org/W2147566730","https://openalex.org/W2149857058","https://openalex.org/W2159675211","https://openalex.org/W2163262659","https://openalex.org/W2164056737","https://openalex.org/W2167566248","https://openalex.org/W2169333371","https://openalex.org/W2171030481","https://openalex.org/W6632813202"],"related_works":["https://openalex.org/W2111288686","https://openalex.org/W2130939068","https://openalex.org/W3163717165","https://openalex.org/W2114466827","https://openalex.org/W2791736663","https://openalex.org/W2129949791","https://openalex.org/W2171298469","https://openalex.org/W2806770614","https://openalex.org/W2769306272","https://openalex.org/W2023465156"],"abstract_inverted_index":{"Biological":[0],"network":[1,37,40,94,113,162,172,232],"analysis":[2,41,95,163,193,233],"is":[3,239],"a":[4,52,110],"powerful":[5,111],"approach":[6],"to":[7,48,50,57,72,90,129,142,149],"gain":[8],"systems-level":[9],"understanding":[10],"of":[11,13,31,35,54,65,86],"patterns":[12],"gene":[14,119,126,132],"expression":[15,127,136],"in":[16],"different":[17,203],"cell":[18],"types,":[19],"disease":[20],"states":[21],"and":[22,39,42,105,134,164,174,182,209,220,223,236,238],"other":[23],"biological/experimental":[24],"conditions.":[25],"Three":[26],"consecutive":[27],"steps":[28,104],"are":[29,140,155,225],"required--identification":[30],"genes":[32,139],"or":[33,120,124,185,206,214],"proteins":[34],"interest,":[36],"construction":[38],"visualization.":[43],"To":[44,76],"date,":[45],"researchers":[46],"have":[47,81],"learn":[49],"use":[51],"combination":[53],"several":[55],"tools":[56],"accomplish":[58],"this":[59],"task.":[60],"In":[61],"addition,":[62],"interactive":[63,165],"visualization":[64,114],"large":[66],"networks":[67,198],"has":[68],"been":[69],"primarily":[70],"restricted":[71],"locally":[73],"installed":[74],"programs.":[75],"address":[77],"these":[78,195],"challenges,":[79],"we":[80],"developed":[82],"NetworkAnalyst,":[83],"taking":[84],"advantage":[85],"state-of-the-art":[87],"web":[88,159],"technologies,":[89],"enable":[91],"high":[92],"performance":[93],"with":[96,202],"rich":[97],"user":[98],"experience.":[99],"NetworkAnalyst":[100,167,227],"integrates":[101],"all":[102],"three":[103],"presents":[106],"the":[107],"results":[108,154],"via":[109],"online":[112],"framework.":[115],"Users":[116,177],"can":[117,178,199],"upload":[118],"protein":[121],"lists,":[122],"single":[123],"multiple":[125],"datasets":[128],"perform":[130,190],"comprehensive":[131],"annotation":[133],"differential":[135],"analysis.":[137],"Significant":[138],"mapped":[141],"our":[143],"manually":[144],"curated":[145],"protein-protein":[146,230],"interaction":[147,231],"database":[148],"construct":[150],"relevant":[151],"networks.":[152],"The":[153,197],"presented":[156],"through":[157],"standard":[158],"browsers":[160],"for":[161,171,234],"exploration.":[166],"supports":[168,229],"common":[169],"functions":[170],"topology":[173],"module":[175],"analyses.":[176],"easily":[179],"search,":[180],"zoom":[181],"highlight":[183],"nodes":[184],"modules,":[186],"as":[187,189,211],"well":[188],"functional":[191],"enrichment":[192],"on":[194],"selections.":[196],"be":[200],"customized":[201],"layouts,":[204],"colors":[205],"node":[207],"sizes,":[208],"exported":[210],"PNG,":[212],"PDF":[213],"GraphML":[215],"files.":[216],"Comprehensive":[217],"FAQs,":[218],"tutorials":[219],"context-based":[221],"tips":[222],"instructions":[224],"provided.":[226],"currently":[228],"human":[235],"mouse":[237],"freely":[240],"available":[241],"at":[242],"http://www.networkanalyst.ca.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":30},{"year":2024,"cited_by_count":42},{"year":2023,"cited_by_count":40},{"year":2022,"cited_by_count":50},{"year":2021,"cited_by_count":71},{"year":2020,"cited_by_count":53},{"year":2019,"cited_by_count":49},{"year":2018,"cited_by_count":42},{"year":2017,"cited_by_count":40},{"year":2016,"cited_by_count":27},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":3}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
