{"id":"https://openalex.org/W2158945625","doi":"https://doi.org/10.1093/nar/gku397","title":"PRISM: a web server and repository for prediction of protein\u2013protein interactions and modeling their 3D complexes","display_name":"PRISM: a web server and repository for prediction of protein\u2013protein interactions and modeling their 3D complexes","publication_year":2014,"publication_date":"2014-05-14","ids":{"openalex":"https://openalex.org/W2158945625","doi":"https://doi.org/10.1093/nar/gku397","mag":"2158945625","pmid":"https://pubmed.ncbi.nlm.nih.gov/24829450"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku397","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W285/7444745/gku397.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/W1/W285/7444745/gku397.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066990221","display_name":"Alper Baspinar","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Alper Baspinar","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065170534","display_name":"Engin Cukuroglu","orcid":null},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Engin Cukuroglu","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025357844","display_name":"Ruth Nussinov","orcid":"https://orcid.org/0000-0002-8115-6415"},"institutions":[{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]},{"id":"https://openalex.org/I4396570585","display_name":"Leidos Biomedical Research Inc. (United States)","ror":"https://ror.org/00bardy64","country_code":null,"type":"company","lineage":["https://openalex.org/I114662689","https://openalex.org/I4396570585"]},{"id":"https://openalex.org/I4210130649","display_name":"Frederick National Laboratory for Cancer Research","ror":"https://ror.org/03v6m3209","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210130649","https://openalex.org/I4210140884"]},{"id":"https://openalex.org/I114662689","display_name":"Leidos (United States)","ror":"https://ror.org/012cvds63","country_code":"US","type":"company","lineage":["https://openalex.org/I114662689"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["IL","US"],"is_corresponding":false,"raw_author_name":"Ruth Nussinov","raw_affiliation_strings":["National Cancer Institute, Cancer and Inflammation Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., National Cancer Institute, Frederick, MD 21702, USA Sackler Institute of Molecular Medicine, Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","Sackler Institute of Molecular Medicine, Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","National Cancer Institute, Cancer and Inflammation Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., National Cancer Institute, Frederick, MD 21702, USA"],"affiliations":[{"raw_affiliation_string":"National Cancer Institute, Cancer and Inflammation Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., National Cancer Institute, Frederick, MD 21702, USA Sackler Institute of Molecular Medicine, Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":[]},{"raw_affiliation_string":"Sackler Institute of Molecular Medicine, Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"National Cancer Institute, Cancer and Inflammation Program, Frederick National Laboratory for Cancer Research, Leidos Biomedical Research, Inc., National Cancer Institute, Frederick, MD 21702, USA","institution_ids":["https://openalex.org/I114662689","https://openalex.org/I4210140884","https://openalex.org/I4210130649","https://openalex.org/I4396570585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057115991","display_name":"\u00d6zlem Keskin","orcid":"https://orcid.org/0000-0002-4202-4049"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Ozlem Keskin","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey agursoy@ku.edu.tr okeskin@ku.edu.tr","Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey agursoy@ku.edu.tr okeskin@ku.edu.tr","institution_ids":[]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036278069","display_name":"Attila G\u00fcrsoy","orcid":"https://orcid.org/0000-0002-2297-2113"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Attila Gursoy","raw_affiliation_strings":["Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey agursoy@ku.edu.tr okeskin@ku.edu.tr","Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey agursoy@ku.edu.tr okeskin@ku.edu.tr","institution_ids":[]},{"raw_affiliation_string":"Center for Computational Biology and Bioinformatics and College of Engineering, Koc University, 34450 Istanbul, Turkey","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5036278069","https://openalex.org/A5057115991"],"corresponding_institution_ids":["https://openalex.org/I1351752"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.9703,"has_fulltext":true,"cited_by_count":217,"citation_normalized_percentile":{"value":0.98250162,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"42","issue":"W1","first_page":"W285","last_page":"W289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prism","display_name":"Prism","score":0.8480075597763062},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.667776346206665},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6582413911819458},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5830426812171936},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.5442907214164734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5082938075065613},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.47975409030914307},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4632161259651184},{"id":"https://openalex.org/keywords/download","display_name":"Download","score":0.4566028416156769},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.42997369170188904},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.4213274419307709},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.4124864637851715},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40168505907058716},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3554246127605438},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24429014325141907},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14699971675872803},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12704721093177795},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.09312871098518372},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.0768524706363678}],"concepts":[{"id":"https://openalex.org/C67666897","wikidata":"https://www.wikidata.org/wiki/Q165896","display_name":"Prism","level":2,"score":0.8480075597763062},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.667776346206665},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6582413911819458},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5830426812171936},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.5442907214164734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5082938075065613},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.47975409030914307},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4632161259651184},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.4566028416156769},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.42997369170188904},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.4213274419307709},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.4124864637851715},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40168505907058716},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3554246127605438},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24429014325141907},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14699971675872803},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12704721093177795},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.09312871098518372},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0768524706363678},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D046912","descriptor_name":"Multiprotein Complexes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gku397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku397","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W285/7444745/gku397.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24829450","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24829450","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:cdm21054.contentdm.oclc.org:IR/612","is_oa":false,"landing_page_url":"http://doi.org/10.1093/nar/gku397","pdf_url":null,"source":{"id":"https://openalex.org/S4306401341","display_name":"Digital Collections portal (Ko\u00e7 University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1351752","host_organization_name":"Ko\u00e7 University","host_organization_lineage":["https://openalex.org/I1351752"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research","raw_type":"Journal article"},{"id":"pmh:oai:europepmc.org:3176855","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086120","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku397","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku397","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W285/7444745/gku397.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.7099999785423279}],"awards":[{"id":"https://openalex.org/G3210673422","display_name":null,"funder_award_id":"113E164","funder_id":"https://openalex.org/F4320322626","funder_display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3667057077","display_name":null,"funder_award_id":"HSN261200800001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4519693722","display_name":null,"funder_award_id":"HHSN261200800001E","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5756171758","display_name":null,"funder_award_id":"HSN261200800001E","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G6211647149","display_name":null,"funder_award_id":"HHSN261200800001","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7019524645","display_name":null,"funder_award_id":"HHSN261200800001","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7836354676","display_name":null,"funder_award_id":"HHSN261200800","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G8198795195","display_name":null,"funder_award_id":"00001","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320322626","display_name":"T\u00fcrkiye Bilimsel ve Teknolojik Ara\u015ft\u0131rma Kurumu","ror":"https://ror.org/04w9kkr77"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158945625.pdf","grobid_xml":"https://content.openalex.org/works/W2158945625.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1965379872","https://openalex.org/W1979237722","https://openalex.org/W1993591356","https://openalex.org/W2003402631","https://openalex.org/W2011703027","https://openalex.org/W2027408247","https://openalex.org/W2028820256","https://openalex.org/W2051710717","https://openalex.org/W2058527555","https://openalex.org/W2067305633","https://openalex.org/W2074382324","https://openalex.org/W2090183113","https://openalex.org/W2091710329","https://openalex.org/W2101333065","https://openalex.org/W2115451817","https://openalex.org/W2121593618","https://openalex.org/W2128276810","https://openalex.org/W2130479394","https://openalex.org/W2139373949","https://openalex.org/W2141624700","https://openalex.org/W2142895465","https://openalex.org/W2152444476","https://openalex.org/W2155030096","https://openalex.org/W2160223331"],"related_works":["https://openalex.org/W2626999804","https://openalex.org/W4250004941","https://openalex.org/W2137014442","https://openalex.org/W2049015391","https://openalex.org/W1533158771","https://openalex.org/W122082928","https://openalex.org/W2521397622","https://openalex.org/W4294067941","https://openalex.org/W2104288289","https://openalex.org/W2128825190"],"abstract_inverted_index":{"The":[0,13,31,74],"PRISM":[1,43,75],"web":[2,76],"server":[3,77],"enables":[4],"fast":[5],"and":[6,22,69,82],"accurate":[7],"prediction":[8,14],"of":[9,49],"protein-protein":[10],"interactions":[11],"(PPIs).":[12],"algorithm":[15],"is":[16,57,78],"knowledge-based.":[17],"It":[18],"combines":[19],"structural":[20,47],"similarity":[21],"accounts":[23],"for":[24],"evolutionary":[25],"conservation":[26],"in":[27,36],"the":[28,62,66,71],"template":[29,55],"interfaces.":[30],"predicted":[32],"models":[33],"are":[34],"stored":[35],"its":[37],"repository.":[38],"Given":[39],"two":[40],"protein":[41],"structures,":[42],"will":[44],"provide":[45],"a":[46,53],"model":[48],"their":[50],"complex":[51,63,72],"if":[52],"matching":[54],"interface":[56,67],"available.":[58],"Users":[59],"can":[60],"download":[61],"structure,":[64],"retrieve":[65],"residues":[68],"visualize":[70],"model.":[73],"user":[79],"friendly,":[80],"free":[81],"open":[83],"to":[84],"all":[85],"users":[86],"at":[87],"http://cosbi.ku.edu.tr/prism.":[88]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":16},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":27},{"year":2020,"cited_by_count":19},{"year":2019,"cited_by_count":27},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":26},{"year":2015,"cited_by_count":13},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
