{"id":"https://openalex.org/W2103132055","doi":"https://doi.org/10.1093/nar/gku396","title":"LocTree3 prediction of localization","display_name":"LocTree3 prediction of localization","publication_year":2014,"publication_date":"2014-05-21","ids":{"openalex":"https://openalex.org/W2103132055","doi":"https://doi.org/10.1093/nar/gku396","mag":"2103132055","pmid":"https://pubmed.ncbi.nlm.nih.gov/24848019"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku396","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W350/17423232/gku396.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/W1/W350/17423232/gku396.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108748492","display_name":"Tatyana Goldberg","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tatyana Goldberg","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), 85748 Garching, Germany goldberg@rostlab.org","Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), 85748 Garching, Germany goldberg@rostlab.org","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"TUM Graduate School, Center of Doctoral Studies in Informatics and its Applications (CeDoSIA), 85748 Garching, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051257421","display_name":"Maximilian Hecht","orcid":"https://orcid.org/0000-0002-1265-4701"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maximilian Hecht","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004159021","display_name":"Tobias Hamp","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Hamp","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025202850","display_name":"Timothy Karl","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Timothy Karl","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010067073","display_name":"Guy Yachdav","orcid":null},"institutions":[{"id":"https://openalex.org/I4210148697","display_name":"Institute of Bioinformatics","ror":"https://ror.org/04hqfvm50","country_code":"IN","type":"nonprofit","lineage":["https://openalex.org/I4210148697"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE","IN"],"is_corresponding":false,"raw_author_name":"Guy Yachdav","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany Biosof LLC, New York, NY 10001, USA","Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","Biosof LLC, New York, NY 10001, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany Biosof LLC, New York, NY 10001, USA","institution_ids":["https://openalex.org/I4210148697"]},{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Biosof LLC, New York, NY 10001, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072444350","display_name":"Nadeem Ahmed","orcid":"https://orcid.org/0000-0001-6004-0037"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nadeem Ahmed","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057493370","display_name":"Uwe Altermann","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Uwe Altermann","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053620470","display_name":"Philipp Angerer","orcid":"https://orcid.org/0000-0002-0369-2888"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Philipp Angerer","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041892698","display_name":"Sonja Ansorge","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sonja Ansorge","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028722158","display_name":"Kinga Balasz","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kinga Balasz","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035722235","display_name":"Michael Bernhofer","orcid":"https://orcid.org/0000-0001-6103-3306"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Bernhofer","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Alexander Betz","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Betz","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089479037","display_name":"Laura Cizmadija","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Laura Cizmadija","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006667916","display_name":"Kieu Trinh","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kieu Trinh Do","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039247920","display_name":"Julia S. Gerke","orcid":"https://orcid.org/0000-0003-0557-7098"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Julia Gerke","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000254718","display_name":"Robert Greil","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Robert Greil","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013501396","display_name":"Vadim Joerdens","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vadim Joerdens","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067591312","display_name":"Maximilian Hastreiter","orcid":"https://orcid.org/0000-0003-3288-4229"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maximilian Hastreiter","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108134214","display_name":"Katharina Hembach","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katharina Hembach","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063276323","display_name":"Max Herzog","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Max Herzog","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112604172","display_name":"Maria Kalemanov","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maria Kalemanov","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077568309","display_name":"Michael Kluge","orcid":"https://orcid.org/0000-0002-1686-8440"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Kluge","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003856965","display_name":"Alice Meier","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alice Meier","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005155092","display_name":"Hassan Nasir","orcid":"https://orcid.org/0000-0002-3544-1944"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hassan Nasir","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044505193","display_name":"Ulrich Neumaier","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulrich Neumaier","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004957828","display_name":"Verena M. Prade","orcid":"https://orcid.org/0000-0001-6387-3982"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Verena Prade","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042525249","display_name":"Jonas Reeb","orcid":"https://orcid.org/0000-0002-8131-660X"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Reeb","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034483689","display_name":"Aleksandr Sorokoumov","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Aleksandr Sorokoumov","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017905332","display_name":"Ilira Troshani","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ilira Troshani","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049487824","display_name":"Susann Vorberg","orcid":"https://orcid.org/0000-0002-7347-4704"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Susann Vorberg","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023405170","display_name":"Sonja Waldraff","orcid":null},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sonja Waldraff","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053037764","display_name":"Jonas Zierer","orcid":"https://orcid.org/0000-0002-9693-1859"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Zierer","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002675555","display_name":"Henrik Nielsen","orcid":"https://orcid.org/0000-0002-9412-9643"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Henrik Nielsen","raw_affiliation_strings":["Center for Biological Sequence Analysis, Department of Systems Biology, DTU, 2800 Lyngby, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biological Sequence Analysis, Department of Systems Biology, DTU, 2800 Lyngby, Denmark","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064905883","display_name":"Burkhard Rost","orcid":"https://orcid.org/0000-0003-0179-8424"},"institutions":[{"id":"https://openalex.org/I309496635","display_name":"Weihenstephan-Triesdorf University of Applied Sciences","ror":"https://ror.org/00gzkxz88","country_code":"DE","type":"education","lineage":["https://openalex.org/I309496635"]},{"id":"https://openalex.org/I4210137766","display_name":"Institute for Advanced Study","ror":"https://ror.org/03xg85719","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210137766"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]},{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Burkhard Rost","raw_affiliation_strings":["Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany Biosof LLC, New York, NY 10001, USA Institute for Advanced Study (TUM-IAS), 85748 Garching, Germany New York Consortium on Membrane Protein Structure (NYCOMPS) & Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA Institute for Food and Plant Sciences WZW - Weihenstephan, 85350 Freising, Germany","New York Consortium on Membrane Protein Structure (NYCOMPS) & Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA","Institute for Advanced Study (TUM-IAS), 85748 Garching, Germany","Biosof LLC, New York, NY 10001, USA","Institute for Food and Plant Sciences WZW \u2013 Weihenstephan, 85350 Freising, Germany","Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany Biosof LLC, New York, NY 10001, USA Institute for Advanced Study (TUM-IAS), 85748 Garching, Germany New York Consortium on Membrane Protein Structure (NYCOMPS) & Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA Institute for Food and Plant Sciences WZW - Weihenstephan, 85350 Freising, Germany","institution_ids":["https://openalex.org/I309496635"]},{"raw_affiliation_string":"New York Consortium on Membrane Protein Structure (NYCOMPS) & Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA","institution_ids":["https://openalex.org/I78577930"]},{"raw_affiliation_string":"Institute for Advanced Study (TUM-IAS), 85748 Garching, Germany","institution_ids":["https://openalex.org/I4210137766"]},{"raw_affiliation_string":"Biosof LLC, New York, NY 10001, USA","institution_ids":[]},{"raw_affiliation_string":"Institute for Food and Plant Sciences WZW \u2013 Weihenstephan, 85350 Freising, Germany","institution_ids":["https://openalex.org/I309496635"]},{"raw_affiliation_string":"Department of Informatics, Bioinformatics-I12, TUM, 85748 Garching, Germany","institution_ids":["https://openalex.org/I62916508"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":1267,"currency":"EUR","value_usd":1366},"fwci":8.3179,"has_fulltext":true,"cited_by_count":355,"citation_normalized_percentile":{"value":0.98467979,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"42","issue":"W1","first_page":"W350","last_page":"W355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7557693719863892},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.7280043363571167},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.6363996267318726},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5449000000953674},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.5282560586929321},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46929413080215454},{"id":"https://openalex.org/keywords/protein-methods","display_name":"Protein methods","score":0.46752312779426575},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4549928605556488},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3645407259464264},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.35940301418304443},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35466331243515015},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33408451080322266},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.2925451695919037},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26420652866363525},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.18261602520942688},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.12124374508857727}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7557693719863892},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.7280043363571167},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.6363996267318726},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5449000000953674},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.5282560586929321},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46929413080215454},{"id":"https://openalex.org/C111364199","wikidata":"https://www.wikidata.org/wiki/Q2915896","display_name":"Protein methods","level":4,"score":0.46752312779426575},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4549928605556488},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3645407259464264},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.35940301418304443},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35466331243515015},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33408451080322266},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.2925451695919037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26420652866363525},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.18261602520942688},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.12124374508857727},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019843","descriptor_name":"Archaeal Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D019843","descriptor_name":"Archaeal Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D019843","descriptor_name":"Archaeal Proteins","qualifier_ui":"Q000032","qualifier_name":"analysis","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gku396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku396","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W350/17423232/gku396.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24848019","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24848019","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:mediatum.ub.tum.de:node/1285331","is_oa":true,"landing_page_url":"http://mediatum.ub.tum.de/node?id=1285331","pdf_url":null,"source":{"id":"https://openalex.org/S4377196330","display_name":"mediaTUM  (Technical University of Munich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I62916508","host_organization_name":"Technical University of Munich","host_organization_lineage":["https://openalex.org/I62916508"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4086075","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086075","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/008bcbd5-de59-4ad1-ab0a-190e3ed5e4ac","is_oa":true,"landing_page_url":"https://orbit.dtu.dk/en/publications/008bcbd5-de59-4ad1-ab0a-190e3ed5e4ac","pdf_url":null,"source":{"id":"https://openalex.org/S4306400705","display_name":"Technical University of Denmark, DTU Orbit (Technical University of Denmark, DTU)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I96673099","host_organization_name":"Technical University of Denmark","host_organization_lineage":["https://openalex.org/I96673099"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gku396","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku396","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W350/17423232/gku396.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320308269","display_name":"Alexander von Humboldt-Stiftung","ror":"https://ror.org/012kf4317"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103132055.pdf","grobid_xml":"https://content.openalex.org/works/W2103132055.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1659313070","https://openalex.org/W1931580337","https://openalex.org/W1973253766","https://openalex.org/W1974188411","https://openalex.org/W2005800049","https://openalex.org/W2024022608","https://openalex.org/W2048947602","https://openalex.org/W2053535202","https://openalex.org/W2057583586","https://openalex.org/W2061833373","https://openalex.org/W2072649575","https://openalex.org/W2099254366","https://openalex.org/W2101220662","https://openalex.org/W2106575335","https://openalex.org/W2108206279","https://openalex.org/W2115595474","https://openalex.org/W2117486996","https://openalex.org/W2120671490","https://openalex.org/W2130479394","https://openalex.org/W2154479185","https://openalex.org/W2158173168","https://openalex.org/W2158714788","https://openalex.org/W2162792752","https://openalex.org/W2163603537","https://openalex.org/W2168267323","https://openalex.org/W2169805130","https://openalex.org/W2787023214","https://openalex.org/W6649221493"],"related_works":["https://openalex.org/W3116784128","https://openalex.org/W2137974866","https://openalex.org/W4252097797","https://openalex.org/W2138458178","https://openalex.org/W2080876451","https://openalex.org/W4286567102","https://openalex.org/W2098429244","https://openalex.org/W2804651207","https://openalex.org/W2160236872","https://openalex.org/W2103132055"],"abstract_inverted_index":{"The":[0,46,83,119,175],"prediction":[1],"of":[2,55,76,97,133,159],"protein":[3,12,17,126,145],"sub-cellular":[4,30],"localization":[5,31],"is":[6,137,178],"an":[7,106,151],"important":[8],"step":[9],"toward":[10],"elucidating":[11],"function.":[13],"For":[14,162],"each":[15,56],"query":[16],"sequence,":[18],"LocTree2":[19,58,89],"applies":[20],"machine":[21,87],"learning":[22],"(profile":[23],"kernel":[24],"SVM)":[25],"to":[26,128],"predict":[27],"the":[28,53,74,86,95,134,157,160,168],"native":[29],"in":[32,37,42],"18":[33],"classes":[34],"for":[35,39,44,110,117,141,150],"eukaryotes,":[36],"six":[38],"bacteria":[40],"and":[41,90,112,146],"three":[43],"archaea.":[45],"method":[47],"outputs":[48],"a":[49,79,113,142,147],"score":[50],"that":[51],"reflects":[52],"reliability":[54],"prediction.":[57],"has":[59],"performed":[60],"on":[61,101],"par":[62],"with":[63],"or":[64],"better":[65],"than":[66],"any":[67],"other":[68],"state-of-the-art":[69],"method.":[70],"Here,":[71],"we":[72],"report":[73],"availability":[75],"LocTree3":[77,104],"as":[78,173],"public":[80],"web":[81,176],"server.":[82],"server":[84,120,136,177],"includes":[85],"learning-based":[88],"improves":[91],"over":[92,163],"it":[93],"through":[94],"addition":[96],"homology-based":[98],"inference.":[99],"Assessed":[100],"sequence-unique":[102],"data,":[103],"reached":[105],"18-state":[107],"accuracy":[108,115],"Q18=80\u00b13%":[109],"eukaryotes":[111],"six-state":[114],"Q6=89\u00b14%":[116],"bacteria.":[118],"accepts":[121],"submissions":[122],"ranging":[123],"from":[124],"single":[125],"sequences":[127],"entire":[129,152],"proteomes.":[130],"Response":[131],"time":[132],"unloaded":[135],"about":[138],"90":[139],"s":[140],"300-residue":[143],"eukaryotic":[144,153],"few":[148],"hours":[149],"proteome":[154],"not":[155],"considering":[156],"generation":[158],"alignments.":[161],"1000":[164],"entirely":[165],"sequenced":[166],"organisms,":[167],"predictions":[169],"are":[170],"directly":[171],"available":[172,179],"downloads.":[174],"at":[180],"http://www.rostlab.org/services/loctree3.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":8},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":39},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":28},{"year":2021,"cited_by_count":69},{"year":2020,"cited_by_count":40},{"year":2019,"cited_by_count":28},{"year":2018,"cited_by_count":30},{"year":2017,"cited_by_count":26},{"year":2016,"cited_by_count":16},{"year":2015,"cited_by_count":20},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2016-06-24T00:00:00"}
