{"id":"https://openalex.org/W1975092906","doi":"https://doi.org/10.1093/nar/gku383","title":"GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs","display_name":"GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs","publication_year":2014,"publication_date":"2014-05-31","ids":{"openalex":"https://openalex.org/W1975092906","doi":"https://doi.org/10.1093/nar/gku383","mag":"1975092906","pmid":"https://pubmed.ncbi.nlm.nih.gov/24880689"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku383","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W325/17423059/gku383.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/W1/W325/17423059/gku383.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055435419","display_name":"Qi Zhao","orcid":"https://orcid.org/0000-0002-8683-6145"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qi Zhao","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032071728","display_name":"Yubin Xie","orcid":"https://orcid.org/0000-0002-3566-4849"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yubin Xie","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038807158","display_name":"Yueyuan Zheng","orcid":"https://orcid.org/0000-0002-5692-8903"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yueyuan Zheng","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101430631","display_name":"Shuai Jiang","orcid":"https://orcid.org/0000-0002-0770-9536"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuai Jiang","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041366828","display_name":"Wenzhong Liu","orcid":"https://orcid.org/0000-0003-3670-3915"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenzhong Liu","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032375104","display_name":"Weiping Mu","orcid":null},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weiping Mu","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027890976","display_name":"Zexian Liu","orcid":"https://orcid.org/0000-0001-9698-0610"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zexian Liu","raw_affiliation_strings":["Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China","Department of Biomedical Engineering, College of Life Science & Technology, Huazhong University of Science and Technology, Wuhan 430074, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China","institution_ids":["https://openalex.org/I47720641"]},{"raw_affiliation_string":"Department of Biomedical Engineering, College of Life Science & Technology, Huazhong University of Science and Technology, Wuhan 430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071440898","display_name":"Yong Zhao","orcid":"https://orcid.org/0000-0001-5068-2212"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yong Zhao","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052691524","display_name":"Yu Xue","orcid":"https://orcid.org/0000-0002-9403-6869"},"institutions":[{"id":"https://openalex.org/I47720641","display_name":"Huazhong University of Science and Technology","ror":"https://ror.org/00p991c53","country_code":"CN","type":"education","lineage":["https://openalex.org/I47720641"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Xue","raw_affiliation_strings":["Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China xueyu@hust.edu.cn","Department of Biomedical Engineering, College of Life Science & Technology, Huazhong University of Science and Technology, Wuhan 430074, China"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China xueyu@hust.edu.cn","institution_ids":[]},{"raw_affiliation_string":"Department of Biomedical Engineering, College of Life Science & Technology, Huazhong University of Science and Technology, Wuhan 430074, China","institution_ids":["https://openalex.org/I47720641"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079092787","display_name":"Jian Ren","orcid":"https://orcid.org/0000-0002-4161-1292"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Ren","raw_affiliation_strings":["State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China renjian.sysu@gmail.com","State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China renjian.sysu@gmail.com","institution_ids":[]},{"raw_affiliation_string":"State Key Laboratory of Biocontrol, School of Life Sciences, School of Advanced Computing, Sun Yat-sen University, Guangzhou 510275, China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5055435419"],"corresponding_institution_ids":["https://openalex.org/I157773358"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":16.685,"has_fulltext":true,"cited_by_count":540,"citation_normalized_percentile":{"value":0.99518356,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"42","issue":"W1","first_page":"W325","last_page":"W330"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11041","display_name":"Ubiquitin and proteasome pathways","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sumo-protein","display_name":"SUMO protein","score":0.9794611930847168},{"id":"https://openalex.org/keywords/sumo-enzymes","display_name":"SUMO enzymes","score":0.679443359375},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6478227972984314},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.608444333076477},{"id":"https://openalex.org/keywords/global-positioning-system","display_name":"Global Positioning System","score":0.5720049738883972},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.4698407053947449},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3967283070087433},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2822848856449127},{"id":"https://openalex.org/keywords/ubiquitin","display_name":"Ubiquitin","score":0.2508396804332733},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21483471989631653},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.07803595066070557}],"concepts":[{"id":"https://openalex.org/C171350616","wikidata":"https://www.wikidata.org/wiki/Q61506","display_name":"SUMO protein","level":4,"score":0.9794611930847168},{"id":"https://openalex.org/C144519050","wikidata":"https://www.wikidata.org/wiki/Q7394994","display_name":"SUMO enzymes","level":5,"score":0.679443359375},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6478227972984314},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.608444333076477},{"id":"https://openalex.org/C60229501","wikidata":"https://www.wikidata.org/wiki/Q18822","display_name":"Global Positioning System","level":2,"score":0.5720049738883972},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.4698407053947449},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3967283070087433},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2822848856449127},{"id":"https://openalex.org/C25602115","wikidata":"https://www.wikidata.org/wiki/Q407111","display_name":"Ubiquitin","level":3,"score":0.2508396804332733},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21483471989631653},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.07803595066070557},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025841","descriptor_name":"Small Ubiquitin-Related Modifier Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025841","descriptor_name":"Small Ubiquitin-Related Modifier Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025841","descriptor_name":"Small Ubiquitin-Related Modifier Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D025841","descriptor_name":"Small Ubiquitin-Related Modifier Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058207","descriptor_name":"Sumoylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gku383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku383","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W325/17423059/gku383.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24880689","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24880689","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4086084","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086084","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku383","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku383","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W325/17423059/gku383.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1030348317","display_name":null,"funder_award_id":"11335","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1632764455","display_name":null,"funder_award_id":"31171263","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2054642318","display_name":null,"funder_award_id":"81272578","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2164271006","display_name":null,"funder_award_id":"2013CB933902","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G2522638127","display_name":null,"funder_award_id":"2012CB910101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2802911279","display_name":null,"funder_award_id":"Young","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5227407644","display_name":null,"funder_award_id":"2014DFB30020","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5634185107","display_name":null,"funder_award_id":"2014DFB30020","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5939423041","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6194230105","display_name":null,"funder_award_id":"2013CB","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6609870569","display_name":null,"funder_award_id":"2012CB911201","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G8487742635","display_name":null,"funder_award_id":"12001133","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1975092906.pdf","grobid_xml":"https://content.openalex.org/works/W1975092906.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W95252060","https://openalex.org/W196210332","https://openalex.org/W1582019318","https://openalex.org/W1796496315","https://openalex.org/W1967707683","https://openalex.org/W1968682449","https://openalex.org/W1973864912","https://openalex.org/W1981700185","https://openalex.org/W1983727026","https://openalex.org/W1986606670","https://openalex.org/W1991189921","https://openalex.org/W1992363628","https://openalex.org/W2008767710","https://openalex.org/W2013108773","https://openalex.org/W2023540360","https://openalex.org/W2024634513","https://openalex.org/W2031668046","https://openalex.org/W2042396800","https://openalex.org/W2044499746","https://openalex.org/W2051961867","https://openalex.org/W2052929547","https://openalex.org/W2055390996","https://openalex.org/W2060817283","https://openalex.org/W2063747935","https://openalex.org/W2068858732","https://openalex.org/W2070182263","https://openalex.org/W2077162184","https://openalex.org/W2091602394","https://openalex.org/W2103552916","https://openalex.org/W2109364787","https://openalex.org/W2122044343","https://openalex.org/W2125213524","https://openalex.org/W2136128861","https://openalex.org/W2138782665","https://openalex.org/W2156125289","https://openalex.org/W2157658519","https://openalex.org/W2158266834","https://openalex.org/W2162172965","https://openalex.org/W2478279870","https://openalex.org/W2791163698","https://openalex.org/W2796936280","https://openalex.org/W6638263864"],"related_works":["https://openalex.org/W4235728428","https://openalex.org/W3043639762","https://openalex.org/W4250047259","https://openalex.org/W2128719376","https://openalex.org/W2129568627","https://openalex.org/W1593932445","https://openalex.org/W1608009266","https://openalex.org/W1999882186","https://openalex.org/W2057861732","https://openalex.org/W2000572110"],"abstract_inverted_index":{"Small":[0],"ubiquitin-like":[1],"modifiers":[2],"(SUMOs)":[3],"regulate":[4],"a":[5,39,47,70],"variety":[6],"of":[7,23,32,55,107,127],"cellular":[8],"processes":[9],"through":[10],"two":[11],"distinct":[12],"mechanisms,":[13],"including":[14],"covalent":[15],"sumoylation":[16,57,119],"and":[17,59,89,102,120,133],"non-covalent":[18],"SUMO":[19,24,33,121],"interaction.":[20],"The":[21],"complexity":[22],"regulations":[25],"has":[26],"greatly":[27],"hampered":[28],"the":[29,53,105,116],"large-scale":[30],"identification":[31],"substrates":[34],"or":[35],"interaction":[36,122],"partners":[37],"on":[38],"proteome-wide":[40],"level.":[41],"In":[42],"this":[43],"work,":[44],"we":[45],"developed":[46],"new":[48,71],"tool":[49],"called":[50],"GPS-SUMO":[51,91,128],"for":[52],"prediction":[54,74],"both":[56],"sites":[58],"SUMO-interaction":[60],"motifs":[61],"(SIMs)":[62],"in":[63,131],"proteins.":[64],"To":[65],"obtain":[66],"an":[67],"accurate":[68],"performance,":[69],"generation":[72],"group-based":[73],"system":[75],"(GPS)":[76],"algorithm":[77],"integrated":[78],"with":[79],"Particle":[80],"Swarm":[81],"Optimization":[82],"approach":[83],"was":[84,92,129],"applied.":[85],"By":[86],"critical":[87],"evaluation":[88],"comparison,":[90],"demonstrated":[93],"to":[94,113],"be":[95],"substantially":[96],"superior":[97],"against":[98],"other":[99],"existing":[100],"tools":[101],"methods.":[103],"With":[104],"help":[106],"GPS-SUMO,":[108],"it":[109],"is":[110],"now":[111],"possible":[112],"further":[114],"investigate":[115],"relationship":[117],"between":[118],"processes.":[123],"A":[124],"web":[125],"service":[126],"implemented":[130],"PHP+JavaScript":[132],"freely":[134],"available":[135],"at":[136],"http://sumosp.biocuckoo.org.":[137]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":42},{"year":2024,"cited_by_count":68},{"year":2023,"cited_by_count":59},{"year":2022,"cited_by_count":39},{"year":2021,"cited_by_count":64},{"year":2020,"cited_by_count":60},{"year":2019,"cited_by_count":43},{"year":2018,"cited_by_count":43},{"year":2017,"cited_by_count":40},{"year":2016,"cited_by_count":49},{"year":2015,"cited_by_count":24},{"year":2014,"cited_by_count":4}],"updated_date":"2026-04-15T08:11:43.952461","created_date":"2025-10-10T00:00:00"}
