{"id":"https://openalex.org/W2158789637","doi":"https://doi.org/10.1093/nar/gku365","title":"deepTools: a flexible platform for exploring deep-sequencing data","display_name":"deepTools: a flexible platform for exploring deep-sequencing data","publication_year":2014,"publication_date":"2014-05-05","ids":{"openalex":"https://openalex.org/W2158789637","doi":"https://doi.org/10.1093/nar/gku365","mag":"2158789637","pmid":"https://pubmed.ncbi.nlm.nih.gov/24799436"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku365","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072166207","display_name":"Fidel Ram\u00edrez","orcid":"https://orcid.org/0000-0002-9142-417X"},"institutions":[{"id":"https://openalex.org/I4210164321","display_name":"Max Planck Institute of Immunobiology and Epigenetics","ror":"https://ror.org/058xzat49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210164321"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fidel Ram\u00edrez","raw_affiliation_strings":["Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany","institution_ids":["https://openalex.org/I4210164321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021656875","display_name":"Friederike D\u00fcndar","orcid":"https://orcid.org/0000-0002-2301-112X"},"institutions":[{"id":"https://openalex.org/I4210164321","display_name":"Max Planck Institute of Immunobiology and Epigenetics","ror":"https://ror.org/058xzat49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210164321"]},{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Friederike D\u00fcndar","raw_affiliation_strings":["Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany Faculty of Biology, University of Freiburg, Sch\u00e4nzlestra\u00dfe 1, 79104 Freiburg, Germany","Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany","Faculty of Biology, University of Freiburg, Sch\u00e4nzlestra\u00dfe 1, 79104 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany Faculty of Biology, University of Freiburg, Sch\u00e4nzlestra\u00dfe 1, 79104 Freiburg, Germany","institution_ids":[]},{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany","institution_ids":["https://openalex.org/I4210164321"]},{"raw_affiliation_string":"Faculty of Biology, University of Freiburg, Sch\u00e4nzlestra\u00dfe 1, 79104 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011368604","display_name":"Sarah Diehl","orcid":null},"institutions":[{"id":"https://openalex.org/I4210164321","display_name":"Max Planck Institute of Immunobiology and Epigenetics","ror":"https://ror.org/058xzat49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210164321"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sarah Diehl","raw_affiliation_strings":["Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany","institution_ids":["https://openalex.org/I4210164321"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006559585","display_name":"Bj\u00f6rn Gr\u00fcning","orcid":"https://orcid.org/0000-0002-3079-6586"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn A. Gr\u00fcning","raw_affiliation_strings":["Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Freiburg, Georges-K\u00f6hler-Allee 106, 79110 Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060587616","display_name":"Thomas Manke","orcid":"https://orcid.org/0000-0003-3702-0868"},"institutions":[{"id":"https://openalex.org/I4210164321","display_name":"Max Planck Institute of Immunobiology and Epigenetics","ror":"https://ror.org/058xzat49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210164321"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Thomas Manke","raw_affiliation_strings":["Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany manke@ie-freiburg.mpg.de","Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany manke@ie-freiburg.mpg.de","institution_ids":[]},{"raw_affiliation_string":"Max Planck Institute of Immunobiology and Epigenetics, St\u00fcbeweg 51, 79108 Freiburg, Germany","institution_ids":["https://openalex.org/I4210164321"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5060587616"],"corresponding_institution_ids":["https://openalex.org/I4210164321"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":35.0043,"has_fulltext":true,"cited_by_count":4147,"citation_normalized_percentile":{"value":0.99888985,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"42","issue":"W1","first_page":"W187","last_page":"W191"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.7866647243499756},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.6418188214302063},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6159452199935913},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.600936233997345},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5486361980438232},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5015301704406738},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.4841688275337219},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.45566409826278687},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.44814109802246094},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40398654341697693},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32756221294403076},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.30475372076034546},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.28149163722991943}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.7866647243499756},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.6418188214302063},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6159452199935913},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.600936233997345},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5486361980438232},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5015301704406738},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.4841688275337219},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.45566409826278687},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.44814109802246094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40398654341697693},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32756221294403076},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.30475372076034546},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.28149163722991943},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gku365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku365","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24799436","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24799436","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:escidoc.org:escidoc:2348817","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-002B-8887-5","pdf_url":null,"source":{"id":"https://openalex.org/S7407052962","display_name":"Max Planck Digital Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:figshare.com:article/1089645","is_oa":true,"landing_page_url":"https://figshare.com/articles/presentation/deepTools_a_flexible_platform_for_exploring_deep_sequencing_data/1089645","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:freidok.uni-freiburg.de:275714","is_oa":false,"landing_page_url":"https://freidok.uni-freiburg.de/data/275714","pdf_url":null,"source":{"id":"https://openalex.org/S4306401057","display_name":"FreiDok plus (Universit\u00e4tsbibliothek Freiburg)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I161046081","host_organization_name":"University of Freiburg","host_organization_lineage":["https://openalex.org/I161046081"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research. - 42, W1 (2014) , W187-W191, ISSN: 1362-4962","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4086134","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086134","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"doi:10.6084/m9.figshare.1089645.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.1089645.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1093/nar/gku365","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku365","pdf_url":"https://academic.oup.com/nar/article-pdf/42/W1/W187/17423011/gku365.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5295865795","display_name":null,"funder_award_id":"SFB 992","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158789637.pdf","grobid_xml":"https://content.openalex.org/works/W2158789637.grobid-xml"},"referenced_works_count":7,"referenced_works":["https://openalex.org/W1988650678","https://openalex.org/W2018604728","https://openalex.org/W2021341670","https://openalex.org/W2035769168","https://openalex.org/W2077968912","https://openalex.org/W2097464861","https://openalex.org/W2136482257"],"related_works":["https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W2944823289","https://openalex.org/W352609212","https://openalex.org/W1511772879","https://openalex.org/W3037018281","https://openalex.org/W4200340037","https://openalex.org/W2909040123","https://openalex.org/W4234342421","https://openalex.org/W2951882034"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,21,45,66,97],"Galaxy":[3],"based":[4],"web":[5,15,140],"server":[6,141],"for":[7,78],"processing":[8],"and":[9,59,62,86,89,99,107,112,122,128],"visualizing":[10],"deeply":[11],"sequenced":[12],"data.":[13],"The":[14,114,139],"server's":[16],"core":[17],"functionality":[18],"consists":[19],"of":[20,23,40,81,92,135,157],"suite":[22],"newly":[24],"developed":[25],"tools,":[26],"called":[27],"deepTools,":[28],"that":[29],"enable":[30,87],"users":[31],"with":[32,53],"little":[33],"bioinformatic":[34],"background":[35],"to":[36,109],"explore":[37],"the":[38,79,133],"results":[39],"their":[41],"sequencing":[42],"experiments":[43],"in":[44,56,65],"standardized":[46],"setting.":[47],"Users":[48],"can":[49,103,142,148],"upload":[50],"pre-processed":[51],"files":[52,82],"continuous":[54],"data":[55,137],"standard":[57],"formats":[58],"generate":[60],"heatmaps":[61],"summary":[63],"plots":[64],"straight-forward,":[67],"yet":[68],"highly":[69],"customizable":[70],"manner.":[71],"In":[72],"addition,":[73],"we":[74],"offer":[75],"several":[76],"tools":[77],"analysis":[80],"containing":[83],"aligned":[84],"reads":[85],"efficient":[88],"reproducible":[90],"generation":[91],"normalized":[93],"coverage":[94],"files.":[95],"As":[96],"modular":[98],"open-source":[100],"platform,":[101],"deepTools":[102,115,147],"easily":[104],"be":[105,143,149],"expanded":[106],"customized":[108],"future":[110],"demands":[111],"developments.":[113],"webserver":[116],"is":[117,123],"freely":[118],"available":[119],"at":[120,131],"http://deeptools.ie-freiburg.mpg.de":[121],"accompanied":[124],"by":[125],"extensive":[126],"documentation":[127],"tutorials":[129],"aimed":[130],"conveying":[132],"principles":[134],"deep-sequencing":[136],"analysis.":[138],"used":[144],"without":[145],"registration.":[146],"installed":[150],"locally":[151],"either":[152],"stand-alone":[153],"or":[154],"as":[155],"part":[156],"Galaxy.":[158]},"counts_by_year":[{"year":2026,"cited_by_count":244},{"year":2025,"cited_by_count":632},{"year":2024,"cited_by_count":779},{"year":2023,"cited_by_count":593},{"year":2022,"cited_by_count":446},{"year":2021,"cited_by_count":453},{"year":2020,"cited_by_count":355},{"year":2019,"cited_by_count":234},{"year":2018,"cited_by_count":167},{"year":2017,"cited_by_count":141},{"year":2016,"cited_by_count":68},{"year":2015,"cited_by_count":24},{"year":2014,"cited_by_count":11}],"updated_date":"2026-06-06T09:05:17.133730","created_date":"2025-10-10T00:00:00"}
