{"id":"https://openalex.org/W2112114689","doi":"https://doi.org/10.1093/nar/gku302","title":"VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery","display_name":"VAP: a versatile aggregate profiler for efficient genome-wide data representation and discovery","publication_year":2014,"publication_date":"2014-04-21","ids":{"openalex":"https://openalex.org/W2112114689","doi":"https://doi.org/10.1093/nar/gku302","mag":"2112114689","pmid":"https://pubmed.ncbi.nlm.nih.gov/24753414"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku302","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gku302","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001543487","display_name":"Charles Coulombe","orcid":null},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"C. Coulombe","raw_affiliation_strings":["D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022626326","display_name":"Christian Poitras","orcid":"https://orcid.org/0000-0001-6444-7600"},"institutions":[{"id":"https://openalex.org/I4210158752","display_name":"Montreal Clinical Research Institute","ror":"https://ror.org/05m8pzq90","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210158752","https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"C. Poitras","raw_affiliation_strings":["Institut de recherches cliniques de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H2W 1R7, Canada"],"affiliations":[{"raw_affiliation_string":"Institut de recherches cliniques de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H2W 1R7, Canada","institution_ids":["https://openalex.org/I4210158752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064302655","display_name":"Alexei Nordell-Markovits","orcid":null},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A. Nordell-Markovits","raw_affiliation_strings":["D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":[]},{"raw_affiliation_string":"D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]},{"raw_affiliation_string":"D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087483261","display_name":"M\u00e9lanie Brunelle","orcid":null},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M. Brunelle","raw_affiliation_strings":["D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033998031","display_name":"M.-A. Lavoie","orcid":null},"institutions":[{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M.-A. Lavoie","raw_affiliation_strings":["D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089971073","display_name":"Fran\u00e7ois Robert","orcid":"https://orcid.org/0000-0003-1054-5920"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]},{"id":"https://openalex.org/I4210158752","display_name":"Montreal Clinical Research Institute","ror":"https://ror.org/05m8pzq90","country_code":"CA","type":"facility","lineage":["https://openalex.org/I4210158752","https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"F. Robert","raw_affiliation_strings":["Institut de recherches cliniques de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H2W 1R7, Canada D\u00e9partement de m\u00e9decine, Facult\u00e9 de m\u00e9decine, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H3T 1J4, Canada Pierre-Etienne.Jacques@USherbrooke.ca","Institut de recherches cliniques de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H2W 1R7, Canada","D\u00e9partement de m\u00e9decine, Facult\u00e9 de m\u00e9decine, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H3T 1J4, Canada"],"affiliations":[{"raw_affiliation_string":"Institut de recherches cliniques de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H2W 1R7, Canada D\u00e9partement de m\u00e9decine, Facult\u00e9 de m\u00e9decine, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H3T 1J4, Canada Pierre-Etienne.Jacques@USherbrooke.ca","institution_ids":[]},{"raw_affiliation_string":"Institut de recherches cliniques de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H2W 1R7, Canada","institution_ids":["https://openalex.org/I4210158752"]},{"raw_affiliation_string":"D\u00e9partement de m\u00e9decine, Facult\u00e9 de m\u00e9decine, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, Qu\u00e9bec, H3T 1J4, Canada","institution_ids":["https://openalex.org/I70931966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007050002","display_name":"Pierre\u2010\u00c9tienne Jacques","orcid":"https://orcid.org/0000-0002-3961-294X"},"institutions":[{"id":"https://openalex.org/I2801825082","display_name":"Centre Hospitalier Universitaire de Sherbrooke","ror":"https://ror.org/020r51985","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2801825082"]},{"id":"https://openalex.org/I135117807","display_name":"Universit\u00e9 de Sherbrooke","ror":"https://ror.org/00kybxq39","country_code":"CA","type":"education","lineage":["https://openalex.org/I135117807"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"P.-E. Jacques","raw_affiliation_strings":["D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada Centre de recherche du Centre hospitalier universitaire de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1H 5N4, Canada Pierre-Etienne.Jacques@USherbrooke.ca","Centre de recherche du Centre hospitalier universitaire de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1H 5N4, Canada","D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada Centre de recherche du Centre hospitalier universitaire de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1H 5N4, Canada Pierre-Etienne.Jacques@USherbrooke.ca","institution_ids":[]},{"raw_affiliation_string":"Centre de recherche du Centre hospitalier universitaire de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1H 5N4, Canada","institution_ids":["https://openalex.org/I2801825082"]},{"raw_affiliation_string":"D\u00e9partement d'informatique, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]},{"raw_affiliation_string":"D\u00e9partement de biologie, Facult\u00e9 des sciences, Universit\u00e9 de Sherbrooke, Sherbrooke, Qu\u00e9bec, J1K 2R1, Canada","institution_ids":["https://openalex.org/I135117807"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5007050002","https://openalex.org/A5089971073"],"corresponding_institution_ids":["https://openalex.org/I135117807","https://openalex.org/I2801825082","https://openalex.org/I4210158752","https://openalex.org/I70931966"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.8539,"has_fulltext":false,"cited_by_count":35,"citation_normalized_percentile":{"value":0.85487964,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"42","issue":"W1","first_page":"W485","last_page":"W493"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6029178500175476},{"id":"https://openalex.org/keywords/memory-footprint","display_name":"Memory footprint","score":0.572196900844574},{"id":"https://openalex.org/keywords/aggregate","display_name":"Aggregate (composite)","score":0.562003493309021},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5417197346687317},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.48297348618507385},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.47452035546302795},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4342506527900696},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41519150137901306},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3962915241718292},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.34347331523895264},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.26998260617256165},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18650361895561218},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.11245676875114441},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.10440641641616821}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6029178500175476},{"id":"https://openalex.org/C74912251","wikidata":"https://www.wikidata.org/wiki/Q6815727","display_name":"Memory footprint","level":2,"score":0.572196900844574},{"id":"https://openalex.org/C4679612","wikidata":"https://www.wikidata.org/wiki/Q866298","display_name":"Aggregate (composite)","level":2,"score":0.562003493309021},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5417197346687317},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.48297348618507385},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.47452035546302795},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4342506527900696},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41519150137901306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3962915241718292},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.34347331523895264},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.26998260617256165},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18650361895561218},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.11245676875114441},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.10440641641616821},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gku302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku302","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24753414","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24753414","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.776.943","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.776.943","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/0a/6f/gku302.PMC4086060.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3221335","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4086060","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku302","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku302","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1965408671","https://openalex.org/W1967596247","https://openalex.org/W1975794113","https://openalex.org/W1980716967","https://openalex.org/W1982134344","https://openalex.org/W1982790679","https://openalex.org/W1984436755","https://openalex.org/W1987762633","https://openalex.org/W1992389562","https://openalex.org/W1998850343","https://openalex.org/W1999491723","https://openalex.org/W2006215395","https://openalex.org/W2013535834","https://openalex.org/W2015516314","https://openalex.org/W2030939957","https://openalex.org/W2032969093","https://openalex.org/W2045755743","https://openalex.org/W2047466565","https://openalex.org/W2060446536","https://openalex.org/W2074304165","https://openalex.org/W2077420823","https://openalex.org/W2078566826","https://openalex.org/W2086376086","https://openalex.org/W2102221598","https://openalex.org/W2103302926","https://openalex.org/W2111099379","https://openalex.org/W2123460634","https://openalex.org/W2125263315","https://openalex.org/W2125362831","https://openalex.org/W2128016314","https://openalex.org/W2135079976","https://openalex.org/W2148085173","https://openalex.org/W2149757771","https://openalex.org/W2150266801","https://openalex.org/W2151108285","https://openalex.org/W2154968323","https://openalex.org/W2155453721","https://openalex.org/W2170778160","https://openalex.org/W2171808845","https://openalex.org/W2259938310","https://openalex.org/W2315705994","https://openalex.org/W2519244818","https://openalex.org/W4239029175"],"related_works":["https://openalex.org/W2626808643","https://openalex.org/W2004064826","https://openalex.org/W3103727510","https://openalex.org/W3143779693","https://openalex.org/W97045569","https://openalex.org/W4293054118","https://openalex.org/W2348021072","https://openalex.org/W2086525401","https://openalex.org/W1871370349","https://openalex.org/W1508207170"],"abstract_inverted_index":{"The":[0,116],"analysis":[1],"of":[2,32,35,77,82,84,96,112,142],"genomic":[3,78],"data":[4],"such":[5,52],"as":[6,25,38],"ChIP-Seq":[7],"usually":[8],"involves":[9],"representing":[10],"the":[11,29,60,97,110,113],"signal":[12],"intensity":[13],"level":[14],"over":[15,80],"genes":[16],"or":[17,37,90,126],"other":[18],"genetic":[19],"features.":[20],"This":[21],"is":[22,54,99,146,173],"often":[23],"illustrated":[24],"a":[26,33,39,91,158],"curve":[27],"(representing":[28,41],"aggregate":[30,62],"profile":[31],"group":[34],"genes)":[36],"heatmap":[40],"individual":[42],"genes).":[43],"However,":[44],"no":[45],"specific":[46],"resource":[47],"dedicated":[48],"to":[49,66,74,121,151],"easily":[50,166],"generating":[51],"profiles":[53,76],"currently":[55],"available.":[56],"We":[57,128],"therefore":[58],"built":[59],"versatile":[61],"profiler":[63],"(VAP),":[64],"designed":[65,150],"be":[67,105,165],"used":[68],"by":[69,156],"experimental":[70],"and":[71,102,135,149,168],"computational":[72],"biologists":[73],"generate":[75],"datasets":[79],"groups":[81,125],"regions":[83],"interest,":[85],"using":[86,157],"either":[87],"an":[88],"absolute":[89],"relative":[92],"method.":[93],"Graphical":[94],"representation":[95],"results":[98],"automatically":[100],"generated,":[101],"subgrouping":[103],"can":[104,138,163],"performed":[106],"easily,":[107],"based":[108],"on":[109,153,170],"orientation":[111],"flanking":[114],"annotations.":[115],"outputs":[117],"include":[118],"statistical":[119],"measures":[120],"facilitate":[122],"comparisons":[123],"between":[124],"datasets.":[127],"show":[129],"that,":[130],"through":[131],"its":[132],"intuitive":[133],"design":[134],"flexibility,":[136],"VAP":[137,145,172],"help":[139],"avoid":[140],"misinterpretations":[141],"genomics":[143],"data.":[144],"highly":[147],"efficient":[148],"run":[152,169],"laptop":[154],"computers":[155],"memory":[159],"footprint":[160],"control,":[161],"but":[162],"also":[164],"compiled":[167],"servers.":[171],"accessible":[174],"at":[175],"http://lab-jacques.recherche.usherbrooke.ca/vap/.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-12T07:58:50.170612","created_date":"2025-10-10T00:00:00"}
