{"id":"https://openalex.org/W2004707197","doi":"https://doi.org/10.1093/nar/gku1158","title":"The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements","display_name":"The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements","publication_year":2014,"publication_date":"2014-11-15","ids":{"openalex":"https://openalex.org/W2004707197","doi":"https://doi.org/10.1093/nar/gku1158","mag":"2004707197","pmid":"https://pubmed.ncbi.nlm.nih.gov/25399418"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku1158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1158","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D240/17437130/gku1158.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/D1/D240/17437130/gku1158.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084558956","display_name":"Adrian Altenhoff","orcid":"https://orcid.org/0000-0001-7492-1273"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Adrian M. Altenhoff","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","University College London, Gower Street, London WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":[]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062768683","display_name":"Nives \u0160kunca","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Nives \u0160kunca","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","University College London, Gower Street, London WC1E 6BT, UK","Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":[]},{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089216831","display_name":"Natasha Glover","orcid":"https://orcid.org/0000-0003-1811-4340"},"institutions":[{"id":"https://openalex.org/I4210092757","display_name":"Bayer (Belgium)","ror":"https://ror.org/00n6v1c97","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210092757","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I4210138126","display_name":"G\u00e9n\u00e9tique, Diversit\u00e9, \u00c9cophysiologie des C\u00e9r\u00e9ales","ror":"https://ror.org/04397qy32","country_code":"FR","type":"facility","lineage":["https://openalex.org/I198244214","https://openalex.org/I4210088668","https://openalex.org/I4210138126","https://openalex.org/I4210147682"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["BE","FR","GB"],"is_corresponding":false,"raw_author_name":"Natasha Glover","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK Institut National de la Recherche Agronomique (INRA) UMR1095, Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu, 63039 Clermont-Ferrand, France Bayer CropScience NV, Technologiepark 38, 9052 Gent, Belgium","Bayer CropScience NV, Technologiepark 38, 9052 Gent, Belgium","University College London, Gower Street, London WC1E 6BT, UK","Institut National de la Recherche Agronomique (INRA) UMR1095, Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu, 63039 Clermont-Ferrand, France"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK Institut National de la Recherche Agronomique (INRA) UMR1095, Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu, 63039 Clermont-Ferrand, France Bayer CropScience NV, Technologiepark 38, 9052 Gent, Belgium","institution_ids":[]},{"raw_affiliation_string":"Bayer CropScience NV, Technologiepark 38, 9052 Gent, Belgium","institution_ids":["https://openalex.org/I4210092757"]},{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Institut National de la Recherche Agronomique (INRA) UMR1095, Genetics, Diversity and Ecophysiology of Cereals, 5 Chemin de Beaulieu, 63039 Clermont-Ferrand, France","institution_ids":["https://openalex.org/I4210138126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024087795","display_name":"Cl\u00e9ment-Marie Train","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Cl\u00e9ment-Marie Train","raw_affiliation_strings":["ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052694798","display_name":"Anna Sueki","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anna Sueki","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021473476","display_name":"Ivana Pili\u017eota","orcid":"https://orcid.org/0000-0003-2365-8748"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ivana Pili\u017eota","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014078048","display_name":"Kevin Gori","orcid":"https://orcid.org/0000-0001-7975-4275"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Kevin Gori","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021300853","display_name":"Bart\u0142omiej Tomiczek","orcid":"https://orcid.org/0000-0001-9295-663X"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bartlomiej Tomiczek","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110699761","display_name":"Steven M\u00fcller","orcid":null},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Steven M\u00fcller","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018101706","display_name":"Henning Redestig","orcid":"https://orcid.org/0000-0003-2130-9288"},"institutions":[{"id":"https://openalex.org/I4210092757","display_name":"Bayer (Belgium)","ror":"https://ror.org/00n6v1c97","country_code":"BE","type":"company","lineage":["https://openalex.org/I4210092757","https://openalex.org/I67348948"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Henning Redestig","raw_affiliation_strings":["Bayer CropScience NV, Technologiepark 38, 9052 Gent, Belgium"],"affiliations":[{"raw_affiliation_string":"Bayer CropScience NV, Technologiepark 38, 9052 Gent, Belgium","institution_ids":["https://openalex.org/I4210092757"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013025384","display_name":"Gast\u00f3n H. Gonnet","orcid":null},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gaston H. Gonnet","raw_affiliation_strings":["Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland"],"affiliations":[{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":[]},{"raw_affiliation_string":"ETH Zurich, Computer Science, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Universit\u00e4tstr. 6, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050068380","display_name":"Christophe Dessimoz","orcid":"https://orcid.org/0000-0002-2170-853X"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Christophe Dessimoz","raw_affiliation_strings":["University College London, Gower Street, London WC1E 6BT, UK European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK c.dessimoz@ucl.ac.uk","European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","University College London, Gower Street, London WC1E 6BT, UK"],"affiliations":[{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK c.dessimoz@ucl.ac.uk","institution_ids":[]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"University College London, Gower Street, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5050068380"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I45129253","https://openalex.org/I87048295"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":1110,"currency":"EUR","value_usd":1197},"fwci":15.2619,"has_fulltext":true,"cited_by_count":223,"citation_normalized_percentile":{"value":0.99431415,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"43","issue":"D1","first_page":"D240","last_page":"D249"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.9346203804016113},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8019638061523438},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.676591694355011},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5997443199157715},{"id":"https://openalex.org/keywords/orthologous-gene","display_name":"Orthologous Gene","score":0.5493306517601013},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5106654763221741},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.45812922716140747},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.45142924785614014},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4446375370025635},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4127155542373657},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"Comparative genomics","score":0.4125574231147766},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.34500205516815186},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2941749691963196},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2399008870124817},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1697487235069275}],"concepts":[{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.9346203804016113},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8019638061523438},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.676591694355011},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5997443199157715},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.5493306517601013},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5106654763221741},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.45812922716140747},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.45142924785614014},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4446375370025635},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4127155542373657},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4125574231147766},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34500205516815186},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2941749691963196},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2399008870124817},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1697487235069275},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017386","descriptor_name":"Sequence Homology, Amino Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D026801","descriptor_name":"Synteny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":10,"locations":[{"id":"doi:10.1093/nar/gku1158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1158","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D240/17437130/gku1158.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25399418","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25399418","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:serval.unil.ch:BIB_0E374421DCD4","is_oa":false,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_0E374421DCD4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research, vol. 43, no. Database issue, pp. D240-9","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.zora.uzh.ch:155267","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Altenhoff, Adrian M; \u0160kunca, Nives; Glover, Natasha; Train, Cl\u00e9ment-Marie; Sueki, Anna; Pili\u017eota, Ivana; Gori, Kevin; Tomiczek, Bartlomiej; M\u00fcller, Steven; Redestig, Henning; Gonnet, Gaston H; Dessimoz, Christophe  (2015). The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.  Nucleic Acids Research, 43(D1):D240-D249.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:HAL:hal-02635942v1","is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-02635942","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 2015, 43 (D1), pp.D240 - D249. ⟨10.1093/nar/gku1158⟩","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:3354903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4383958","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:iris.unil.ch:iris/46130","is_oa":false,"landing_page_url":"https://iris.unil.ch/handle/iris/46130","pdf_url":null,"source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/106322","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/106322","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, 43 (D1)","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"doi:10.3929/ethz-b-000106322","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-b-000106322","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5167/uzh-155267","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-155267","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1093/nar/gku1158","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1158","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D240/17437130/gku1158.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G611471526","display_name":null,"funder_award_id":"BB/L018241/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6315045300","display_name":null,"funder_award_id":"Impact","funder_id":"https://openalex.org/F4320320286","funder_display_name":"University College London"},{"id":"https://openalex.org/G8013902810","display_name":"Automated identification of optimal data-specific organelle clusters using freely available protein annotations","funder_award_id":"BB/L018241/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320286","display_name":"University College London","ror":"https://ror.org/02jx3x895"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320332735","display_name":"Bayer CropScience","ror":"https://ror.org/04hmn8g73"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2004707197.pdf","grobid_xml":"https://content.openalex.org/works/W2004707197.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1552559843","https://openalex.org/W1963828658","https://openalex.org/W1964612763","https://openalex.org/W1968002146","https://openalex.org/W1977027195","https://openalex.org/W1985493792","https://openalex.org/W1990813498","https://openalex.org/W1994547959","https://openalex.org/W1997130867","https://openalex.org/W1997272729","https://openalex.org/W1999295332","https://openalex.org/W2009234149","https://openalex.org/W2010562878","https://openalex.org/W2010704699","https://openalex.org/W2012035190","https://openalex.org/W2022472106","https://openalex.org/W2023472009","https://openalex.org/W2029541254","https://openalex.org/W2030308218","https://openalex.org/W2038184529","https://openalex.org/W2041386815","https://openalex.org/W2044892321","https://openalex.org/W2046951963","https://openalex.org/W2047729281","https://openalex.org/W2048448217","https://openalex.org/W2078101442","https://openalex.org/W2082202339","https://openalex.org/W2085063752","https://openalex.org/W2102698306","https://openalex.org/W2103017472","https://openalex.org/W2106808634","https://openalex.org/W2109454141","https://openalex.org/W2110582126","https://openalex.org/W2114250447","https://openalex.org/W2114676910","https://openalex.org/W2117602634","https://openalex.org/W2122821321","https://openalex.org/W2128516932","https://openalex.org/W2141282191","https://openalex.org/W2151404319","https://openalex.org/W2153488363","https://openalex.org/W2154715173","https://openalex.org/W2159266221","https://openalex.org/W2163603537","https://openalex.org/W2166081493","https://openalex.org/W2167645766","https://openalex.org/W2171192872","https://openalex.org/W2182404474","https://openalex.org/W3210308821","https://openalex.org/W4210290733"],"related_works":["https://openalex.org/W2121479060","https://openalex.org/W2626545547","https://openalex.org/W2952105401","https://openalex.org/W4375955900","https://openalex.org/W2047144846","https://openalex.org/W2593890490","https://openalex.org/W2117959411","https://openalex.org/W4322421693","https://openalex.org/W4295013818","https://openalex.org/W1976971681"],"abstract_inverted_index":{"The":[0],"Orthologous":[1],"Matrix":[2],"(OMA)":[3],"project":[4],"is":[5],"a":[6,44,74],"method":[7],"and":[8,65,95,105,124],"associated":[9,23],"database":[10],"inferring":[11],"evolutionary":[12],"relationships":[13],"amongst":[14],"currently":[15],"1706":[16],"complete":[17],"proteomes":[18],"(i.e.":[19],"the":[20,56,70,79,102,121],"protein":[21],"sequence":[22],"for":[24,62,112],"every":[25],"protein-coding":[26],"gene":[27],"in":[28,41,66,69,92],"all":[29],"genomes).":[30],"In":[31],"this":[32],"update":[33],"article,":[34],"we":[35],"present":[36],"six":[37],"major":[38],"new":[39,45,75],"developments":[40],"OMA:":[42],"(i)":[43],"web":[46],"interface;":[47],"(ii)":[48],"Gene":[49],"Ontology":[50],"function":[51],"predictions":[52],"as":[53],"part":[54],"of":[55,82,101],"OMA":[57,116,122],"pipeline;":[58],"(iii)":[59],"better":[60],"support":[61],"plant":[63],"genomes":[64],"particular":[67],"homeologs":[68],"wheat":[71],"genome;":[72],"(iv)":[73],"synteny":[76],"viewer":[77],"providing":[78],"genomic":[80],"context":[81],"orthologs;":[83],"(v)":[84],"statically":[85],"computed":[86],"hierarchical":[87],"orthologous":[88],"groups":[89],"subsets":[90],"downloadable":[91],"OrthoXML":[93],"format;":[94],"(vi)":[96],"possibility":[97],"to":[98,106],"export":[99],"parts":[100],"all-against-all":[103],"computations":[104],"combine":[107],"them":[108],"with":[109],"custom":[110],"data":[111],"'client-side'":[113],"orthology":[114],"prediction.":[115],"can":[117],"be":[118],"accessed":[119],"through":[120],"Browser":[123],"various":[125],"programmatic":[126],"interfaces":[127],"at":[128],"http://omabrowser.org.":[129]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":18},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":34},{"year":2017,"cited_by_count":50},{"year":2016,"cited_by_count":46},{"year":2015,"cited_by_count":10}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}