{"id":"https://openalex.org/W2152375430","doi":"https://doi.org/10.1093/nar/gku1127","title":"Type material in the NCBI Taxonomy Database","display_name":"Type material in the NCBI Taxonomy Database","publication_year":2014,"publication_date":"2014-11-14","ids":{"openalex":"https://openalex.org/W2152375430","doi":"https://doi.org/10.1093/nar/gku1127","mag":"2152375430","pmid":"https://pubmed.ncbi.nlm.nih.gov/25398905"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku1127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1127","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D1086/17436637/gku1127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/D1/D1086/17436637/gku1127.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046762591","display_name":"Scott Federhen","orcid":null},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Scott Federhen","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA federhen@ncbi.nlm.nih.gov","National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA federhen@ncbi.nlm.nih.gov","institution_ids":[]},{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5046762591"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210109390"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":7.9859,"has_fulltext":false,"cited_by_count":187,"citation_normalized_percentile":{"value":0.98251956,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"43","issue":"D1","first_page":"D1086","last_page":"D1098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.9847000241279602,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8489316701889038},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8301465511322021},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.7912501692771912},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5710243582725525},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5038079619407654},{"id":"https://openalex.org/keywords/herbarium","display_name":"Herbarium","score":0.49889183044433594},{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.4534298777580261},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.36574864387512207},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.3311207890510559},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2522827386856079},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20749059319496155},{"id":"https://openalex.org/keywords/zoology","display_name":"Zoology","score":0.1823199987411499},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.13433736562728882},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.11688405275344849},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07247209548950195}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8489316701889038},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8301465511322021},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.7912501692771912},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5710243582725525},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5038079619407654},{"id":"https://openalex.org/C78945076","wikidata":"https://www.wikidata.org/wiki/Q181916","display_name":"Herbarium","level":2,"score":0.49889183044433594},{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.4534298777580261},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.36574864387512207},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3311207890510559},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2522827386856079},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20749059319496155},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.1823199987411499},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.13433736562728882},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.11688405275344849},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07247209548950195}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009317","descriptor_name":"National Library of Medicine (U.S.)","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014481","descriptor_name":"United States","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064349","descriptor_name":"Genome, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gku1127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1127","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D1086/17436637/gku1127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25398905","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25398905","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.774.8643","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.774.8643","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/fc/24/gku1127.PMC4383940.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:3354886","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4383940","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku1127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1127","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D1086/17436637/gku1127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2152375430.pdf","grobid_xml":"https://content.openalex.org/works/W2152375430.grobid-xml"},"referenced_works_count":54,"referenced_works":["https://openalex.org/W42739717","https://openalex.org/W51932600","https://openalex.org/W76905625","https://openalex.org/W161522097","https://openalex.org/W1500276280","https://openalex.org/W1559049453","https://openalex.org/W1969181767","https://openalex.org/W1993679825","https://openalex.org/W2001447987","https://openalex.org/W2016052220","https://openalex.org/W2031851856","https://openalex.org/W2034285706","https://openalex.org/W2035948876","https://openalex.org/W2048942437","https://openalex.org/W2051838613","https://openalex.org/W2053721365","https://openalex.org/W2077392973","https://openalex.org/W2077991901","https://openalex.org/W2080626046","https://openalex.org/W2085414663","https://openalex.org/W2085572538","https://openalex.org/W2103296919","https://openalex.org/W2108688522","https://openalex.org/W2116206245","https://openalex.org/W2124190365","https://openalex.org/W2126321303","https://openalex.org/W2128126578","https://openalex.org/W2130460780","https://openalex.org/W2130956021","https://openalex.org/W2131101891","https://openalex.org/W2133574536","https://openalex.org/W2137516483","https://openalex.org/W2142678031","https://openalex.org/W2143448381","https://openalex.org/W2145107779","https://openalex.org/W2146988500","https://openalex.org/W2151350595","https://openalex.org/W2155376333","https://openalex.org/W2163749873","https://openalex.org/W2165170362","https://openalex.org/W2165283631","https://openalex.org/W2169895835","https://openalex.org/W2177650689","https://openalex.org/W2189621344","https://openalex.org/W2327413685","https://openalex.org/W2405729256","https://openalex.org/W2427274663","https://openalex.org/W2493802979","https://openalex.org/W2908554677","https://openalex.org/W4231897523","https://openalex.org/W4292295412","https://openalex.org/W6601707112","https://openalex.org/W6676122810","https://openalex.org/W6679049297"],"related_works":["https://openalex.org/W2268830973","https://openalex.org/W4205584750","https://openalex.org/W2945242638","https://openalex.org/W621886040","https://openalex.org/W2947286974","https://openalex.org/W1160338706","https://openalex.org/W2099481465","https://openalex.org/W2115221233","https://openalex.org/W2161176033","https://openalex.org/W2938811089"],"abstract_inverted_index":{"Type":[0],"material":[1,53],"is":[2],"the":[3,11,19,22,29,33],"taxonomic":[4],"device":[5],"that":[6,14,54],"ties":[7],"formal":[8],"names":[9],"to":[10,28,39,57],"physical":[12],"specimens":[13,37],"serve":[15],"as":[16],"exemplars":[17],"for":[18,32,71],"species.":[20],"For":[21],"prokaryotes":[23],"these":[24],"are":[25,36,78],"strains":[26],"submitted":[27,38],"culture":[30],"collections;":[31],"eukaryotes":[34],"they":[35],"museums":[40],"or":[41],"herbaria.":[42],"The":[43],"NCBI":[44,73],"Taxonomy":[45],"Database":[46],"(http://www.ncbi.nlm.nih.gov/taxonomy)":[47],"now":[48],"includes":[49],"annotation":[50],"of":[51,76],"type":[52,61],"we":[55],"use":[56],"flag":[58],"sequences":[59],"from":[60],"in":[62,65],"GenBank":[63],"and":[64],"Genomes.":[66],"This":[67],"has":[68],"important":[69],"implications":[70],"many":[72],"resources,":[74],"some":[75],"which":[77],"outlined":[79],"below.":[80]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":13},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":17},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":21},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":22},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":21},{"year":2015,"cited_by_count":15},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
