{"id":"https://openalex.org/W2168637722","doi":"https://doi.org/10.1093/nar/gku1121","title":"VirHostNet 2.0: surfing on the web of virus/host molecular interactions data","display_name":"VirHostNet 2.0: surfing on the web of virus/host molecular interactions data","publication_year":2014,"publication_date":"2014-11-11","ids":{"openalex":"https://openalex.org/W2168637722","doi":"https://doi.org/10.1093/nar/gku1121","mag":"2168637722","pmid":"https://pubmed.ncbi.nlm.nih.gov/25392406"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku1121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1121","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D583/17436529/gku1121.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/43/D1/D583/17436529/gku1121.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006438949","display_name":"Thibaut Guirimand","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thibaut Guirimand","raw_affiliation_strings":["PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033447619","display_name":"St\u00e9phane Delmotte","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"St\u00e9phane Delmotte","raw_affiliation_strings":["PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France UMR5558, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","UMR5558, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France UMR5558, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"UMR5558, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]},{"raw_affiliation_string":"PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015988270","display_name":"Vincent Navratil","orcid":"https://orcid.org/0000-0001-9974-1877"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210095118","display_name":"Centre de Recherche en Neurosciences de Lyon","ror":"https://ror.org/00pdd0432","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210095118","https://openalex.org/I4210096427","https://openalex.org/I4405259976"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Vincent Navratil","raw_affiliation_strings":["PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France navratil@prabi.fr","PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France navratil@prabi.fr","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I4210095118"]},{"raw_affiliation_string":"PRABI, Rh\u00f4ne Alpes Bioinformatics Center, UCBL, Lyon1, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015988270"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I4210095118"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.975,"has_fulltext":false,"cited_by_count":249,"citation_normalized_percentile":{"value":0.97175198,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"43","issue":"D1","first_page":"D583","last_page":"D587"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11668","display_name":"interferon and immune responses","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7775132656097412},{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6128506064414978},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5499647259712219},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.5423581600189209},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.541801393032074},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5364665985107422},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40058082342147827},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.2852265238761902},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.26974546909332275},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.20425355434417725}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7775132656097412},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6128506064414978},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5499647259712219},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.5423581600189209},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.541801393032074},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5364665985107422},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40058082342147827},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.2852265238761902},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.26974546909332275},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20425355434417725},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D014777","descriptor_name":"Virus Diseases","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gku1121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1121","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D583/17436529/gku1121.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25392406","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25392406","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3354882","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4383936","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gku1121","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1121","pdf_url":"https://academic.oup.com/nar/article-pdf/43/D1/D583/17436529/gku1121.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1977799803","https://openalex.org/W2009191875","https://openalex.org/W2049762266","https://openalex.org/W2053581512","https://openalex.org/W2055043387","https://openalex.org/W2070924692","https://openalex.org/W2079619043","https://openalex.org/W2085540051","https://openalex.org/W2088422296","https://openalex.org/W2094757405","https://openalex.org/W2101998831","https://openalex.org/W2102545006","https://openalex.org/W2107055030","https://openalex.org/W2107249189","https://openalex.org/W2115048111","https://openalex.org/W2116988471","https://openalex.org/W2130810176","https://openalex.org/W2133177319","https://openalex.org/W2142485337","https://openalex.org/W2158439765","https://openalex.org/W2162665092","https://openalex.org/W2165253681","https://openalex.org/W2169382766","https://openalex.org/W2169806717","https://openalex.org/W2605068739","https://openalex.org/W4247554111","https://openalex.org/W6677308826"],"related_works":["https://openalex.org/W2099982459","https://openalex.org/W1982038138","https://openalex.org/W2109298101","https://openalex.org/W2133294187","https://openalex.org/W2159860826","https://openalex.org/W3192210502","https://openalex.org/W1981737222","https://openalex.org/W1998222399","https://openalex.org/W2007507741","https://openalex.org/W4381715389"],"abstract_inverted_index":{"VirHostNet":[0,62,105],"release":[1,20],"2.0":[2,63,106],"(http://virhostnet.prabi.fr)":[3],"is":[4,45,64],"a":[5,22,54,72],"knowledgebase":[6],"dedicated":[7],"to":[8,30,75,121,135,139,163],"the":[9,17,32,41,76,104,148,153,157,165],"network-based":[10],"exploration":[11],"of":[12,25,35,61,82,115],"virus-host":[13,85],"protein-protein":[14,37,86],"interactions.":[15],"Since":[16],"previous":[18],"VirhostNet":[19],"(2009),":[21],"second":[23],"run":[24],"manual":[26],"curation":[27],"was":[28],"performed":[29],"annotate":[31],"new":[33,59,123],"torrent":[34],"high-throughput":[36],"interactions":[38,87],"data":[39],"from":[40],"literature.":[42],"This":[43,130],"resource":[44,81,131],"shared":[46],"publicly,":[47],"in":[48,147,156],"PSI-MI":[49],"TAB":[50],"2.5":[51],"format,":[52],"using":[53],"PSICQUIC":[55],"web":[56,68],"service.":[57],"The":[58],"interface":[60],"based":[65],"on":[66,143],"Cytoscape":[67],"library":[69],"and":[70,79,84,112,118,155],"provides":[71],"user-friendly":[73],"access":[74],"most":[77],"complete":[78],"accurate":[80],"virus-virus":[83],"as":[88,90],"well":[89],"their":[91,94],"projection":[92],"onto":[93],"corresponding":[95],"host":[96,166],"cell":[97,154],"protein":[98],"interaction":[99],"networks.":[100],"We":[101],"hope":[102],"that":[103],"system":[107],"will":[108,119,132],"facilitate":[109],"systems":[110],"biology":[111],"gene-centered":[113],"analysis":[114],"infectious":[116],"diseases":[117],"help":[120,136],"identify":[122],"molecular":[124,144],"targets":[125],"for":[126],"antiviral":[127,149],"drugs":[128],"design.":[129],"also":[133],"continue":[134],"worldwide":[137],"scientists":[138],"improve":[140],"our":[141],"knowledge":[142],"mechanisms":[145],"involved":[146],"response":[150],"mediated":[151],"by":[152,161],"viral":[158],"strategies":[159],"selected":[160],"viruses":[162],"hijack":[164],"immune":[167],"system.":[168]},"counts_by_year":[{"year":2026,"cited_by_count":13},{"year":2025,"cited_by_count":17},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":20},{"year":2022,"cited_by_count":43},{"year":2021,"cited_by_count":26},{"year":2020,"cited_by_count":35},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":18},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":15},{"year":2015,"cited_by_count":8},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-19T21:40:30.786675","created_date":"2025-10-10T00:00:00"}
