{"id":"https://openalex.org/W2081212776","doi":"https://doi.org/10.1093/nar/gku1064","title":"TFClass: a classification of human transcription factors and their rodent orthologs","display_name":"TFClass: a classification of human transcription factors and their rodent orthologs","publication_year":2014,"publication_date":"2014-10-31","ids":{"openalex":"https://openalex.org/W2081212776","doi":"https://doi.org/10.1093/nar/gku1064","mag":"2081212776","pmid":"https://pubmed.ncbi.nlm.nih.gov/25361979"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gku1064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1064","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gku1064","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029172959","display_name":"Edgar Wingender","orcid":"https://orcid.org/0000-0002-7729-8453"},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Edgar Wingender","raw_affiliation_strings":["Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany geneXplain GmbH, D-38302 Wolfenb\u00fcttel, Germany edgar.wingender@bioinf.med.uni-goettingen.de","Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany geneXplain GmbH, D-38302 Wolfenb\u00fcttel, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany geneXplain GmbH, D-38302 Wolfenb\u00fcttel, Germany edgar.wingender@bioinf.med.uni-goettingen.de","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany geneXplain GmbH, D-38302 Wolfenb\u00fcttel, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030975715","display_name":"Torsten Schoeps","orcid":null},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Torsten Schoeps","raw_affiliation_strings":["Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192","https://openalex.org/I4210116730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074217468","display_name":"Martin Haubrock","orcid":"https://orcid.org/0000-0001-5292-4561"},"institutions":[{"id":"https://openalex.org/I4210116730","display_name":"Universit\u00e4tsmedizin G\u00f6ttingen","ror":"https://ror.org/021ft0n22","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210116730"]},{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Martin Haubrock","raw_affiliation_strings":["Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University Medical Center G\u00f6ttingen, Georg August University, D-37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192","https://openalex.org/I4210116730"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010196918","display_name":"J\u00fcrgen D\u00f6nitz","orcid":"https://orcid.org/0000-0002-8401-8851"},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"J\u00fcrgen D\u00f6nitz","raw_affiliation_strings":["Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, Georg August University, D-37077 G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Johann-Friedrich-Blumenbach Institute of Zoology and Anthropology, Georg August University, D-37077 G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":1267,"currency":"EUR","value_usd":1366},"fwci":3.2107,"has_fulltext":false,"cited_by_count":111,"citation_normalized_percentile":{"value":0.92568227,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"43","issue":"D1","first_page":"D97","last_page":"D102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8889325261116028},{"id":"https://openalex.org/keywords/subfamily","display_name":"Subfamily","score":0.7521070241928101},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.6762391328811646},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6136375069618225},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5956721901893616},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5711446404457092},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5081839561462402},{"id":"https://openalex.org/keywords/gene-isoform","display_name":"Gene isoform","score":0.48972252011299133},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.45844578742980957},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.16016581654548645},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.15557673573493958}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8889325261116028},{"id":"https://openalex.org/C50929876","wikidata":"https://www.wikidata.org/wiki/Q164280","display_name":"Subfamily","level":3,"score":0.7521070241928101},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.6762391328811646},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6136375069618225},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5956721901893616},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5711446404457092},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5081839561462402},{"id":"https://openalex.org/C53345823","wikidata":"https://www.wikidata.org/wiki/Q5531554","display_name":"Gene isoform","level":3,"score":0.48972252011299133},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.45844578742980957},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.16016581654548645},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.15557673573493958}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004247","descriptor_name":"DNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004268","descriptor_name":"DNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gku1064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1064","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:25361979","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25361979","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:3354851","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4383905","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:goescholar:1/11134","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/11134","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/38125","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gro-2/38125","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"}],"best_oa_location":{"id":"doi:10.1093/nar/gku1064","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gku1064","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5191918390","display_name":"Systems Biology of Colorectal Cancer","funder_award_id":"258236","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W58753057","https://openalex.org/W1604281503","https://openalex.org/W1964733653","https://openalex.org/W1965409500","https://openalex.org/W1976066719","https://openalex.org/W1997272729","https://openalex.org/W2014061560","https://openalex.org/W2017040061","https://openalex.org/W2026690931","https://openalex.org/W2032019900","https://openalex.org/W2048019749","https://openalex.org/W2055043387","https://openalex.org/W2061674320","https://openalex.org/W2071726755","https://openalex.org/W2075406901","https://openalex.org/W2094036688","https://openalex.org/W2095353706","https://openalex.org/W2098412979","https://openalex.org/W2105389823","https://openalex.org/W2107644675","https://openalex.org/W2109108939","https://openalex.org/W2123480822","https://openalex.org/W2124306771","https://openalex.org/W2127012419","https://openalex.org/W2127322768","https://openalex.org/W2132069487","https://openalex.org/W2135030836","https://openalex.org/W2143592941","https://openalex.org/W2153349010","https://openalex.org/W2154447604","https://openalex.org/W2156627746","https://openalex.org/W2165102934","https://openalex.org/W2168708922","https://openalex.org/W2605068739","https://openalex.org/W4247554111","https://openalex.org/W4285719527","https://openalex.org/W6602345093"],"related_works":["https://openalex.org/W2523831781","https://openalex.org/W3017862060","https://openalex.org/W2152598442","https://openalex.org/W1966024327","https://openalex.org/W2379997263","https://openalex.org/W2367493320","https://openalex.org/W2131580913","https://openalex.org/W3083097828","https://openalex.org/W1576021314","https://openalex.org/W2125854412"],"abstract_inverted_index":{"TFClass":[0,135],"aims":[1],"at":[2,46,139],"classifying":[3],"eukaryotic":[4],"transcription":[5],"factors":[6],"(TFs)":[7],"according":[8],"to":[9,41,72,118],"their":[10,42],"DNA-binding":[11,35,93],"domains":[12],"(DBDs).":[13],"For":[14],"this,":[15],"a":[16,123,142],"classification":[17],"schema":[18],"comprising":[19],"four":[20],"generic":[21],"levels":[22],"(superclass,":[23],"class,":[24],"family":[25],"and":[26,54,66,76,95,145],"subfamily)":[27],"was":[28,125],"defined":[29],"that":[30],"could":[31],"accommodate":[32],"all":[33,64],"known":[34],"human":[36,74,110,120],"TFs.":[37],"They":[38],"were":[39,89],"assigned":[40,90],"(sub-)families":[43],"as":[44],"instances":[45],"two":[47],"different":[48],"levels,":[49],"the":[50,61,73,77],"corresponding":[51],"TF":[52,106,121],"genes":[53],"individual":[55],"gene":[56,111],"products":[57],"(protein":[58],"isoforms).":[59],"In":[60],"present":[62],"version,":[63],"mouse":[65,78],"rat":[67],"orthologs":[68,79],"have":[69,80],"been":[70,81],"linked":[71],"TFs,":[75],"arranged":[82],"in":[83,148],"an":[84],"independent":[85],"ontology.":[86],"Many":[87],"TFs":[88],"with":[91],"typical":[92],"patterns":[94],"positional":[96],"weight":[97],"matrices":[98],"derived":[99],"from":[100,109],"high-throughput":[101],"in-vitro":[102],"binding":[103,107],"studies.":[104],"Predicted":[105],"sites":[108],"upstream":[112],"sequences":[113],"are":[114],"now":[115],"also":[116],"attached":[117],"each":[119],"whenever":[122],"PWM":[124],"available":[126,138],"for":[127,146],"this":[128],"factor":[129],"or":[130],"one":[131],"of":[132],"his":[133],"paralogs.":[134],"is":[136],"freely":[137],"http://tfclass.bioinf.med.uni-goettingen.de/":[140],"through":[141],"web":[143],"interface":[144],"download":[147],"OBO":[149],"format.":[150]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":12},{"year":2015,"cited_by_count":6}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}