{"id":"https://openalex.org/W2109138480","doi":"https://doi.org/10.1093/nar/gkt981","title":"YeastNet v3: a public database of data-specific and integrated functional gene networks for<i>Saccharomyces cerevisiae</i>","display_name":"YeastNet v3: a public database of data-specific and integrated functional gene networks for<i>Saccharomyces cerevisiae</i>","publication_year":2013,"publication_date":"2013-10-27","ids":{"openalex":"https://openalex.org/W2109138480","doi":"https://doi.org/10.1093/nar/gkt981","mag":"2109138480","pmid":"https://pubmed.ncbi.nlm.nih.gov/24165882"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt981","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt981","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D731/16803898/gkt981.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D731/16803898/gkt981.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050657463","display_name":"Hanhae Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":true,"raw_author_name":"Hanhae Kim","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049171920","display_name":"Junha Shin","orcid":"https://orcid.org/0000-0003-3175-3446"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Junha Shin","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067280395","display_name":"Eiru Kim","orcid":"https://orcid.org/0000-0002-1901-5670"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Eiru Kim","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100439154","display_name":"Hyojin Kim","orcid":"https://orcid.org/0000-0001-7703-5170"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyojin Kim","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028639165","display_name":"Sohyun Hwang","orcid":"https://orcid.org/0000-0003-2461-6806"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sohyun Hwang","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075624025","display_name":"Jung Eun Shim","orcid":"https://orcid.org/0000-0001-6341-9923"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jung Eun Shim","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035867403","display_name":"Insuk Lee","orcid":"https://orcid.org/0000-0003-3146-6180"},"institutions":[{"id":"https://openalex.org/I193775966","display_name":"Yonsei University","ror":"https://ror.org/01wjejq96","country_code":"KR","type":"education","lineage":["https://openalex.org/I193775966"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Insuk Lee","raw_affiliation_strings":["Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea"],"affiliations":[{"raw_affiliation_string":"Department of Biotechnology, College of Life Science and Biotechnology, Yonsei University, Seoul, Korea","institution_ids":["https://openalex.org/I193775966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5050657463"],"corresponding_institution_ids":["https://openalex.org/I193775966"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.8933,"has_fulltext":true,"cited_by_count":82,"citation_normalized_percentile":{"value":0.94316701,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"42","issue":"D1","first_page":"D731","last_page":"D736"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8307058811187744},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6886346936225891},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.6777821183204651},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5749567747116089},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.554363489151001},{"id":"https://openalex.org/keywords/eukaryote","display_name":"Eukaryote","score":0.5487155318260193},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5258463025093079},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5200700163841248},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5113510489463806},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.49540555477142334},{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.48009636998176575},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.456308513879776},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.41139256954193115},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.14048773050308228}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8307058811187744},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6886346936225891},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.6777821183204651},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5749567747116089},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.554363489151001},{"id":"https://openalex.org/C2779413310","wikidata":"https://www.wikidata.org/wiki/Q19088","display_name":"Eukaryote","level":4,"score":0.5487155318260193},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5258463025093079},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5200700163841248},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5113510489463806},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.49540555477142334},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.48009636998176575},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.456308513879776},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.41139256954193115},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.14048773050308228}],"mesh":[{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015966","descriptor_name":"Gene Expression Regulation, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt981","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt981","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D731/16803898/gkt981.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24165882","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24165882","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2943157","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965021","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt981","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt981","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D731/16803898/gkt981.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5017536821","display_name":null,"funder_award_id":"2012M3A9C7050151","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G6320152228","display_name":null,"funder_award_id":"2010-0017649","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"},{"id":"https://openalex.org/G7459535004","display_name":null,"funder_award_id":"2012M3A9B4028641","funder_id":"https://openalex.org/F4320322120","funder_display_name":"National Research Foundation of Korea"}],"funders":[{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320322120","display_name":"National Research Foundation of Korea","ror":"https://ror.org/013aysd81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2109138480.pdf","grobid_xml":"https://content.openalex.org/works/W2109138480.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W1970250905","https://openalex.org/W1986062719","https://openalex.org/W1998767819","https://openalex.org/W2007174731","https://openalex.org/W2036956532","https://openalex.org/W2043377651","https://openalex.org/W2046618236","https://openalex.org/W2054885243","https://openalex.org/W2074755764","https://openalex.org/W2075951102","https://openalex.org/W2107249189","https://openalex.org/W2131909808","https://openalex.org/W2133422502","https://openalex.org/W2134092731","https://openalex.org/W2143962926"],"related_works":["https://openalex.org/W2411754504","https://openalex.org/W2385133607","https://openalex.org/W2979763983","https://openalex.org/W4388362683","https://openalex.org/W2158714033","https://openalex.org/W2038585037","https://openalex.org/W78967844","https://openalex.org/W2109134015","https://openalex.org/W3213185671","https://openalex.org/W4210989272"],"abstract_inverted_index":{"Saccharomyces":[0],"cerevisiae,":[1],"i.e.":[2],"baker's":[3],"yeast,":[4,76],"is":[5],"a":[6,71,134],"widely":[7],"studied":[8],"model":[9],"organism":[10],"in":[11,112],"eukaryote":[12],"genetics":[13,85],"because":[14],"of":[15,28,45,63,106,121,172],"its":[16],"simple":[17],"protocols":[18],"for":[19,47,75,83,142,152],"genetic":[20],"manipulation":[21],"and":[22,86],"phenotype":[23],"profiling.":[24],"The":[25,109],"high":[26],"abundance":[27],"publicly":[29],"available":[30],"data":[31,180],"that":[32,101],"has":[33,40,80],"been":[34,81],"generated":[35],"through":[36],"diverse":[37],"'omics'":[38],"approaches":[39],"led":[41],"to":[42,57,117,138,183],"the":[43,60,64,104,122,140,163,173,184],"use":[44],"yeast":[46],"many":[48],"systems":[49,87],"biology":[50,88],"studies,":[51],"including":[52],"large-scale":[53],"gene":[54,73],"network":[55,74,175],"modeling":[56],"better":[58],"understand":[59],"molecular":[61],"basis":[62],"cellular":[65],"phenotype.":[66],"We":[67],"have":[68],"previously":[69],"developed":[70],"genome-scale":[72],"YeastNet":[77,96,113,131,146],"v2,":[78],"which":[79],"used":[82],"various":[84],"studies.":[89],"Here,":[90],"we":[91],"present":[92],"an":[93],"updated":[94],"version,":[95],"v3":[97,114,132,147],"(available":[98],"at":[99],"http://www.inetbio.org/yeastnet/),":[100],"significantly":[102],"improves":[103],"prediction":[105],"gene-phenotype":[107],"associations.":[108],"extended":[110],"genome":[111],"covers":[115],"up":[116],"5818":[118],"genes":[119],"(\u223c99%":[120],"coding":[123],"genome)":[124],"wired":[125],"by":[126,176],"362":[127],"512":[128],"functional":[129,158],"links.":[130,187],"provides":[133,149],"new":[135],"web":[136],"interface":[137],"run":[139],"tools":[141],"network-guided":[143],"hypothesis":[144],"generations.":[145],"also":[148],"edge":[150],"information":[151],"all":[153],"data-specific":[154,186],"networks":[155],"(\u223c2":[156],"million":[157],"links)":[159],"as":[160,162],"well":[161],"integrated":[164,174],"networks.":[165],"Therefore,":[166],"users":[167],"can":[168],"construct":[169],"alternative":[170],"versions":[171],"applying":[177],"their":[178],"own":[179],"integration":[181],"algorithm":[182],"same":[185]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":6}],"updated_date":"2026-04-23T09:07:50.710637","created_date":"2016-06-24T00:00:00"}