{"id":"https://openalex.org/W4233317564","doi":"https://doi.org/10.1093/nar/gkt559","title":"Editorial","display_name":"Editorial","publication_year":2013,"publication_date":"2013-06-19","ids":{"openalex":"https://openalex.org/W4233317564","doi":"https://doi.org/10.1093/nar/gkt559"},"language":"es","primary_location":{"id":"doi:10.1093/nar/gkt559","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt559","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W1/3887471/gkt559.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"editorial","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W1/3887471/gkt559.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065328235","display_name":"Gary Benson","orcid":"https://orcid.org/0000-0003-2374-5462"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Gary Benson","raw_affiliation_strings":["Executive Editor Web Server Issue Nucleic Acids Research June 2013"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Executive Editor Web Server Issue Nucleic Acids Research June 2013","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5065328235"],"corresponding_institution_ids":[],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":null,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"41","issue":"W1","first_page":"W1","last_page":"W2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":null,"topics":[],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9010297656059265},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3480885624885559}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9010297656059265},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3480885624885559}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1093/nar/gkt559","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt559","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W1/3887471/gkt559.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2686074","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt559","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt559","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W1/3887471/gkt559.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4233317564.pdf","grobid_xml":"https://content.openalex.org/works/W4233317564.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"The":[0,42,77,107,236,334,549,908,962],"2013":[1,108,194],"Web":[2,109,262,276,307,448,517,550,603,694,731,765,823,826,865,882,963,1042],"Server":[3,110,277,766,824,866,964],"Issue":[4,742],"of":[5,15,28,70,115,137,176,221,226,232,292,358,425,436,487,511,535,583,617,620,637,661,667,675,689,726,730,779,821,834,845,878,912,936,973,993,996,1011],"Nucleic":[6],"Acids":[7],"Research":[8],"is":[9,33,54,267,337,502,630,914],"the":[10,113,165,181,193,227,247,275,290,306,309,344,364,368,414,465,485,491,509,512,533,564,567,581,584,588,602,618,662,724,739,748,764,797,812,822,829,832,863,875,879,906,921,937,956,971,974,990,1005,1029,1040,1066],"11th":[11],"in":[12,160,274,298,346,377,384,441,644,718,811,905,1028,1038],"a":[13,154,173,222,256,268,293,323,359,426,430,434,459,481,499,521,626,719,744,755,791,947],"series":[14,435],"annual":[16],"special":[17,52,117,835],"issues":[18],"dedicated":[19,1006],"to":[20,171,180,249,305,388,438,464,593,598,699,710,788,859,884,929,933,942,1018,1048,1062],"web-based":[21],"software":[22],"resources":[23],"for":[24,120,134,140,187,206,218,239,279,313,326,461,537,625,687,714,763,799,840,862,910,920,951,1034],"analysis":[25,63,82,536,757,844,852],"and":[26,57,64,85,90,94,101,132,200,229,255,259,330,375,399,405,496,532,543,576,578,606,659,669,672,681,701,775,807,850,853,892,946,977,989,1007,1023,1065],"visualization":[27,407],"molecular":[29],"biology":[30,794,842],"data.":[31],"It":[32,315],"freely":[34,985],"available":[35,986],"online":[36],"under":[37],"NAR's":[38],"open":[39],"access":[40,497],"policy.":[41],"present":[43],"issue":[44,111,278,767,867,923,965],"reports":[45],"on":[46,55,252,635],"95":[47],"web":[48,138,155,178,233,280,285,482,627,987],"servers.":[49],"This":[50,504,708,898],"year\u2019s":[51],"emphasis":[53,836],"network":[56,849],"pathway":[58,851],"analysis,":[59],"high-throughput":[60,125,846],"sequencing":[61,130,847],"data":[62,131,254,329,348,488,531,641,664,704,720,736],"biological":[65,854],"text":[66,855],"mining.":[67,856],"A":[68],"total":[69],"11":[71],"articles":[72,158,913],"deal":[73],"with":[74,153,322,819,874,983],"these":[75,161,953],"topics.":[76],"major":[78],"topic":[79],"categories":[80],"include":[81,633,657,930],"involving":[83],"DNA":[84],"RNA":[86],"(14":[87],"articles),":[88],"genes":[89],"genomes":[91],"(10":[92],"articles)":[93],"protein":[95,97],"structure,":[96],"ligand":[98],"binding,":[99],"docking":[100],"functional":[102,261,881],"site":[103,551,883],"prediction":[104,691],"(30":[105],"articles).":[106],"continues":[112],"presentation":[114],"two":[116],"categories,":[118],"one":[119,133],"stand-alone":[121],"programs":[122,443],"that":[123,143,265,287,342,409,421,450,479,519,529,562,629,733,753],"analyze":[124,702],"data,":[126,848],"such":[127,780],"as":[128,473,743,790],"next-generation":[129],"large":[135],"collections":[136],"services":[139],"automated":[141],"analyses":[142],"can":[144,493],"be":[145,350,373,395,403,418,439,446,471,526,541,553,652,706,838,901,968],"used":[146,383,643],"programmatically":[147],"rather":[148,610],"than":[149,301,611],"through":[150,566],"manual":[151],"interaction":[152],"browser.":[156],"Four":[157],"fall":[159],"categories.":[162],"To":[163],"streamline":[164],"review":[166],"process,":[167,569],"authors":[168,800],"are":[169,241,311,614,684,759,894,958],"required":[170],"send":[172],"one-page":[174,871],"summary":[175,223],"their":[177,454,786,870,926,1035],"server":[179,234,628],"editor,":[182],"Dr":[183],"Gary":[184],"Benson":[185],"(narwbsrv@bu.edu),":[186],"pre-approval":[188,240],"before":[189,272,903],"manuscript":[190,207,787,957],"submission.":[191,208],"For":[192,354,828],"issue,":[195,831],"293":[196],"summaries":[197],"were":[198,204,215],"submitted":[199,919],"129,":[201],"or":[202,213,282,412,433,560,716,722],"44%,":[203],"approved":[205],"Of":[209],"those":[210,599,711],"approved,":[211],"95,":[212],"73%,":[214],"ultimately":[216],"accepted":[217],"publication.":[219],"Review":[220],"includes":[224],"evaluation":[225],"proposal":[228,624,825,872,1041],"extensive":[230,557],"testing":[231,820],"functionality.":[235],"key":[237],"criteria":[238],"high":[242],"scientific":[243],"quality,":[244],"wide":[245],"interest,":[246],"ability":[248],"do":[250,451],"computations":[251],"user-submitted":[253,703],"well-designed,":[257],"well-implemented":[258],"fully":[260,880],"site.":[263,604],"Note":[264,420,528],"there":[266],"minimum":[269],"2-year":[270],"interval":[271],"publication":[273,297],"servers,":[281,286],"essentially":[283],"similar":[284,597],"have":[288,317,980],"been":[289],"subject":[291],"previous":[294],"publication,":[295],"including":[296,678,940],"journals":[299],"other":[300,442,547],"NAR.":[302],"With":[303],"respect":[304],"site,":[308],"following":[310],"guidelines":[312],"approval.":[314],"should":[316,349,372,394,402,417,506,552,591,656,737,900],"an":[318,474,477,556],"easy-to-find":[319],"submission":[320,568,911],"page":[321],"simple":[324],"mechanism":[325,460],"loading":[327],"test":[328,332],"setting":[331],"parameters.":[333],"preferred":[335],"method":[336,758,773],"one-click":[338],"loading.":[339],"Additional":[340,1046],"mechanisms":[341],"assist":[343],"user":[345,365,492,539,565],"submitting":[347],"implemented":[351],"where":[352],"appropriate.":[353],"example,":[355],"automatic":[356],"download":[357],"pdb":[360],"structure":[361],"file":[362,574],"once":[363],"has":[366,1055],"entered":[367],"appropriate":[369,762],"identifier.":[370],"Output":[371],"dynamic":[374,594],"rich":[376],"detail.":[378],"Wherever":[379],"possible,":[380,587],"supporting":[381],"evidence":[382],"calculations":[385,455],"and/or":[386],"links":[387,932,941,954],"external":[389],"databases":[390],"containing":[391],"additional":[392],"information":[393,411,899],"provided.":[396],"Numerical,":[397],"textual":[398],"visual":[400],"output":[401,422,595],"mixed":[404],"any":[406],"tools":[408,839],"add":[410],"increase":[413],"user\u2019s":[415],"understanding":[416],"used.":[419],"consisting":[423],"merely":[424],"few":[427],"numerical":[428],"values,":[429],"static":[431],"spreadsheet":[432],"files":[437],"opened":[440],"will":[444,524,650,705,837],"not":[445,452,525,544,642,651,696,761,967],"approved.":[447,527],"servers":[449],"finish":[453],"immediately":[456],"must":[457,540,632,868,924],"implement":[458],"returning":[462],"results":[463,534],"user.":[466],"Notification":[467],"by":[468,546,555,601,886,1004],"email":[469],"may":[470],"provided":[472,600,981,1056],"option,":[475],"but":[476],"alternative":[478],"returns":[480],"link":[483,505,592],"at":[484,498,750,801,896,960,1068],"time":[486],"submission,":[489],"which":[490],"then":[494],"bookmark":[495],"later":[500],"time,":[501],"required.":[503],"ideally":[507],"report":[508],"status":[510],"job":[513],"(queued,":[514],"running,":[515],"finished).":[516],"sites":[518,695,732,1043],"use":[520],"guest":[522],"login":[523],"uploaded":[530],"each":[538],"private":[542],"viewable":[545],"users.":[548],"supported":[554],"help":[558,589,608],"section":[559,928],"tutorial":[561],"guides":[563],"contains":[570],"details":[571,634],"about":[572],"input":[573],"formats":[575],"parameters,":[577],"importantly,":[579],"explains":[580],"meaning":[582],"output.":[585],"Whenever":[586],"pages":[590,609],"examples":[596],"Text":[605],"figure":[607],"video":[612],"tutorials":[613],"preferable":[615],"because":[616,768],"ease":[619],"quick":[621],"lookup.":[622],"Any":[623],"\u2018predictive\u2019":[631],"validation":[636,648,663,692,776],"predictions":[638],"from":[639],"new":[640,756],"training.":[645],"N-fold":[646],"cross":[647],"methods":[649,781],"considered":[653],"sufficient.":[654],"Details":[655],"size":[658],"composition":[660],"set":[665],"(number":[666],"positive":[668],"negative":[670],"cases),":[671],"several":[673],"measures":[674],"predictive":[676],"performance,":[677],"sensitivity,":[679],"specificity":[680],"precision.":[682],"Proposals":[683,752],"frequently":[685],"rejected":[686],"lack":[688],"adequate":[690,772],"information.":[693],"clearly":[697],"designed":[698],"accept":[700],"rejected.":[707],"applies":[709],"established":[712],"primarily":[713],"lookup":[715],"exploration":[717],"set,":[721],"serve":[723],"function":[725],"\u2018data":[727],"aggregators\u2019.":[728],"Authors":[729,778,857],"provide":[734],"novel":[735],"consider":[738,784],"NAR":[740,789],"Database":[741],"possible":[745,969,1002],"venue":[746],"(see":[747,796],"instructions":[749,798,891],"http://www.oxfordjournals.org/our_journals/nar/for_authors/msprep_database.html).":[751],"describe":[754],"generally":[760],"limited":[769],"space":[770],"makes":[771],"description":[774],"problematic.":[777],"might":[782],"instead":[783],"sending":[785,904],"regular":[792],"computational":[793],"article":[795],"http://www.oxfordjournals.org/our_journals/nar/for_authors/criteria_scope.html#Computational%20Biology).":[802],"Allyson":[803,1019],"Byrd,":[804,1020],"Joe":[805,1021],"Perez-Rogers":[806,1022],"Chetanya":[808,1024],"Pandya,":[809,1025],"students":[810,1027],"Boston":[813,1030],"University":[814,1031,1070],"Bioinformatics":[815,1032],"Graduate":[816],"Program,":[817,1033],"helped":[818],"sites.":[827],"2014":[830,864,922],"topics":[833],"synthetic":[841],"design,":[843],"wishing":[858],"submit":[860,869],"manuscripts":[861],"along":[873],"URL":[876],"address":[877],"narwbsrv@bu.edu":[885],"31":[887,915],"December":[888],"2013.":[889],"Detailed":[890],"requirements":[893],"presented":[895,959],"http://www.oxfordjournals.org/nar/for_authors/submission_webserver.html.":[897,961],"consulted":[902],"summary.":[907],"deadline":[909],"January":[916],"2014.":[917],"Manuscripts":[918],"format":[925],"References":[927],"active":[931],"electronic":[934],"versions":[935],"cited":[938],"articles,":[939],"PubMed,":[943],"PubMed":[944],"Central":[945],"DOI":[948],"link.":[949],"Instructions":[950],"incorporating":[952],"into":[955],"would":[966],"without":[970],"work":[972,999],"many":[975],"scientists":[976],"programmers":[978],"who":[979,1054],"us":[982],"outstanding,":[984],"resources,":[988],"conscientious":[991],"efforts":[992],"literally":[994],"hundreds":[995],"reviewers.":[997],"My":[998],"was":[1000],"made":[1001],"only":[1003],"tireless":[1008],"editorial":[1009],"assistance":[1010,1037],"Fay":[1012],"Oppenheim.":[1013],"Thank":[1014],"you.":[1015],"Thanks":[1016,1060],"also":[1017,1061],"PhD":[1026],"outstanding":[1036],"evaluating":[1039],"(Figure":[1044],"1).":[1045],"thanks":[1047],"Martine":[1049],"Bernardes-Silva,":[1050],"Editorial":[1051],"Manager,":[1052],"NAR,":[1053],"frequent,":[1057],"cheerful":[1058],"assistance.":[1059],"Jennifer":[1063],"Boyd,":[1064],"staff":[1067],"Oxford":[1069],"Press.":[1071]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2022-05-12T00:00:00"}
