{"id":"https://openalex.org/W2119892487","doi":"https://doi.org/10.1093/nar/gkt530","title":"Genome Maps, a new generation genome browser","display_name":"Genome Maps, a new generation genome browser","publication_year":2013,"publication_date":"2013-06-08","ids":{"openalex":"https://openalex.org/W2119892487","doi":"https://doi.org/10.1093/nar/gkt530","mag":"2119892487","pmid":"https://pubmed.ncbi.nlm.nih.gov/23748955"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt530","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt530","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkt530","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068938981","display_name":"Ignacio Medina","orcid":"https://orcid.org/0000-0003-0095-670X"},"institutions":[{"id":"https://openalex.org/I4210165109","display_name":"Centro de Investigacion Principe Felipe","ror":"https://ror.org/05xr2yq54","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210165109"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Medina","raw_affiliation_strings":["Department of Computational Genomics, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia 46012, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Genomics, Centro de Investigaci\u00f3n Pr\u00edncipe Felipe, Valencia 46012, Spain","institution_ids":["https://openalex.org/I4210165109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044524656","display_name":"Francisco Salavert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francisco Salavert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011836507","display_name":"Rub\u00e9n S\u00e1nchez","orcid":"https://orcid.org/0000-0003-4589-1647"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rub\u00e9n Sanchez","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080750187","display_name":"Alejandro de Mar\u00eda","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Alejandro de Maria","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102752981","display_name":"Roberto Alonso","orcid":"https://orcid.org/0000-0002-2737-7559"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roberto Alonso","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010016924","display_name":"Jos\u00e9\u2010Pablo Escobar","orcid":"https://orcid.org/0000-0001-9749-0285"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pablo Escobar","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048271276","display_name":"Marta Bleda","orcid":"https://orcid.org/0000-0002-1287-6013"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marta Bleda","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5074140420","display_name":"Joaqu\u0131\u0301n Dopazo","orcid":"https://orcid.org/0000-0003-3318-120X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joaqu\u00edn Dopazo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.9499,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.91538443,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"41","issue":"W1","first_page":"W41","last_page":"W46"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10878","display_name":"CRISPR and Genetic Engineering","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.8262057304382324},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7499916553497314},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.5756732821464539},{"id":"https://openalex.org/keywords/javascript","display_name":"JavaScript","score":0.4981818199157715},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4861912131309509},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4852433204650879},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.48015183210372925},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4608556628227234},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.4521862864494324},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.42807114124298096},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.4195306599140167},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3809737265110016},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.3613095283508301},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3455580472946167},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.3079680800437927},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23647388815879822},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17705771327018738},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.13713353872299194}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.8262057304382324},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7499916553497314},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.5756732821464539},{"id":"https://openalex.org/C544833334","wikidata":"https://www.wikidata.org/wiki/Q2005","display_name":"JavaScript","level":2,"score":0.4981818199157715},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4861912131309509},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4852433204650879},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.48015183210372925},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4608556628227234},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.4521862864494324},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.42807114124298096},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.4195306599140167},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3809737265110016},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3613095283508301},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3455580472946167},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.3079680800437927},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23647388815879822},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17705771327018738},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.13713353872299194}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt530","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt530","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23748955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23748955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2686043","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692043","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt530","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt530","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1490553060","https://openalex.org/W1571439191","https://openalex.org/W1993334375","https://openalex.org/W2012884498","https://openalex.org/W2021341670","https://openalex.org/W2028133290","https://openalex.org/W2037476500","https://openalex.org/W2092741708","https://openalex.org/W2103017472","https://openalex.org/W2105114815","https://openalex.org/W2105299326","https://openalex.org/W2107916366","https://openalex.org/W2112192177","https://openalex.org/W2123261759","https://openalex.org/W2128016314","https://openalex.org/W2140965631","https://openalex.org/W2142570576","https://openalex.org/W2143797649","https://openalex.org/W2145477956","https://openalex.org/W2150308846","https://openalex.org/W2151694001","https://openalex.org/W2163262659","https://openalex.org/W2167033647","https://openalex.org/W2167155938","https://openalex.org/W2167283139","https://openalex.org/W2772934464","https://openalex.org/W2928505729","https://openalex.org/W4210347168","https://openalex.org/W4211208250","https://openalex.org/W6675471023"],"related_works":["https://openalex.org/W189065216","https://openalex.org/W2052664817","https://openalex.org/W4229794866","https://openalex.org/W2390043081","https://openalex.org/W2105071916","https://openalex.org/W4243357985","https://openalex.org/W2143797649","https://openalex.org/W1976142521","https://openalex.org/W4383032973","https://openalex.org/W2129156298"],"abstract_inverted_index":{"Genome":[0,47,150,196,214,228],"browsers":[1],"have":[2],"gained":[3],"importance":[4],"as":[5,74,139],"more":[6],"genomes":[7],"and":[8,60,84,87,94,128,136],"related":[9],"genomic":[10,165],"information":[11,18],"become":[12],"available.":[13],"However,":[14],"the":[15,28,38,69,101,104,160,181,186,224],"increase":[16],"of":[17,40,57,106,163,188,212],"brought":[19],"about":[20],"by":[21,100,192,206],"new":[22,70],"generation":[23],"sequencing":[24],"technologies":[25,67],"is,":[26],"at":[27,81,180],"same":[29],"time,":[30],"causing":[31],"a":[32,49,153,209],"subtle":[33],"but":[34],"continuous":[35],"decrease":[36],"in":[37,149,177,202,223],"efficiency":[39],"conventional":[41],"genome":[42,50,157],"browsers.":[43],"Here,":[44],"we":[45],"present":[46],"Maps,":[48],"browser":[51,158],"that":[52,78,172],"implements":[53],"an":[54,217],"innovative":[55],"model":[56],"data":[58,92,118,166,190],"transfer":[59],"management.":[61],"The":[62],"program":[63],"uses":[64],"highly":[65],"efficient":[66],"from":[68,133],"HTML5":[71],"standard,":[72],"such":[73],"scalable":[75],"vector":[76],"graphics,":[77],"optimize":[79],"workloads":[80],"both":[82],"server":[83],"client":[85,182],"sides":[86],"ensure":[88],"future":[89],"scalability.":[90],"Thus,":[91],"management":[93,187],"representation":[95],"are":[96,131,137,146],"entirely":[97],"carried":[98],"out":[99],"browser,":[102],"without":[103],"need":[105],"any":[107,203],"Java":[108],"Applet,":[109],"Flash":[110],"or":[111,170],"other":[112],"plug-in":[113],"technology":[114],"installation.":[115],"Relevant":[116],"biological":[117],"on":[119],"genes,":[120],"transcripts,":[121],"exons,":[122],"regulatory":[123],"features,":[124],"single-nucleotide":[125],"polymorphisms,":[126],"karyotype":[127],"so":[129],"forth,":[130],"imported":[132],"web":[134,204],"services":[135],"available":[138,222,231],"tracks.":[140],"In":[141],"addition,":[142],"several":[143],"DAS":[144],"servers":[145],"already":[147],"included":[148],"Maps.":[151],"As":[152],"novelty,":[154],"this":[155],"web-based":[156],"allows":[159],"local":[161],"upload":[162],"huge":[164],"files":[167],"(e.g.":[168],"VCF":[169],"BAM)":[171],"can":[173,198],"be":[174,200],"dynamically":[175],"visualized":[176],"real":[178],"time":[179],"side,":[183],"thus":[184],"facilitating":[185],"medical":[189],"affected":[191],"privacy":[193],"restrictions.":[194],"Finally,":[195],"Maps":[197,215,229],"easily":[199],"integrated":[201],"application":[205],"including":[207],"only":[208],"few":[210],"lines":[211],"code.":[213],"is":[216,230],"open":[218],"source":[219],"collaborative":[220],"initiative":[221],"GitHub":[225],"repository":[226],"(https://github.com/compbio-bigdata-viz/genome-maps).":[227],"at:":[232],"http://www.genomemaps.org.":[233]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
