{"id":"https://openalex.org/W1978920362","doi":"https://doi.org/10.1093/nar/gkt453","title":"BeEP Server: using evolutionary information for quality assessment of protein structure models","display_name":"BeEP Server: using evolutionary information for quality assessment of protein structure models","publication_year":2013,"publication_date":"2013-05-31","ids":{"openalex":"https://openalex.org/W1978920362","doi":"https://doi.org/10.1093/nar/gkt453","mag":"1978920362","pmid":"https://pubmed.ncbi.nlm.nih.gov/23729471"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt453","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W398/16943837/gkt453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W398/16943837/gkt453.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083072847","display_name":"Nicol\u00e1s Pal\u00f3poli","orcid":"https://orcid.org/0000-0001-7925-6436"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Nicolas Palopoli","raw_affiliation_strings":["Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes, B1876BXD, Bernal, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes, B1876BXD, Bernal, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060622294","display_name":"Esteban Lanzarotti","orcid":null},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Esteban Lanzarotti","raw_affiliation_strings":["Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes, B1876BXD, Bernal, Buenos Aires, Argentina, 2 Centre for Biological Sciences, University of Southampton, SO17 1BJ, Southampton, UK and 3 Departamento de Quimica Biologica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EHA, Buenos Aires, Argentina","Fundaci\u00f3n Ciencias Exactas y Naturales, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes, B1876BXD, Bernal, Buenos Aires, Argentina, 2 Centre for Biological Sciences, University of Southampton, SO17 1BJ, Southampton, UK and 3 Departamento de Quimica Biologica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EHA, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249","https://openalex.org/I53241121"]},{"raw_affiliation_string":"Fundaci\u00f3n Ciencias Exactas y Naturales, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037751052","display_name":"Gustavo Parisi","orcid":"https://orcid.org/0000-0001-7444-1624"},"institutions":[{"id":"https://openalex.org/I138504249","display_name":"National University of Quilmes","ror":"https://ror.org/01r53hz59","country_code":"AR","type":"education","lineage":["https://openalex.org/I138504249"]},{"id":"https://openalex.org/I53241121","display_name":"Fundaci\u00f3n Ciencias Exactas y Naturales","ror":"https://ror.org/05rxmkq09","country_code":"AR","type":"nonprofit","lineage":["https://openalex.org/I53241121"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Gustavo Parisi","raw_affiliation_strings":["Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes, B1876BXD, Bernal, Buenos Aires, Argentina, 2 Centre for Biological Sciences, University of Southampton, SO17 1BJ, Southampton, UK and 3 Departamento de Quimica Biologica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EHA, Buenos Aires, Argentina","Fundaci\u00f3n Ciencias Exactas y Naturales, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ciencia y Tecnologia, Universidad Nacional de Quilmes, B1876BXD, Bernal, Buenos Aires, Argentina, 2 Centre for Biological Sciences, University of Southampton, SO17 1BJ, Southampton, UK and 3 Departamento de Quimica Biologica, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, C1428EHA, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I138504249","https://openalex.org/I53241121"]},{"raw_affiliation_string":"Fundaci\u00f3n Ciencias Exactas y Naturales, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I53241121"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5037751052"],"corresponding_institution_ids":["https://openalex.org/I138504249","https://openalex.org/I53241121"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.4123,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.61763184,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"41","issue":"W1","first_page":"W398","last_page":"W405"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.6785722374916077},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.614149272441864},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5713525414466858},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.506091296672821},{"id":"https://openalex.org/keywords/substitution","display_name":"Substitution (logic)","score":0.49017056822776794},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.48112788796424866},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4620710015296936},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4446316659450531},{"id":"https://openalex.org/keywords/parameterized-complexity","display_name":"Parameterized complexity","score":0.42832961678504944},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.4139925241470337},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4122507572174072},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33730053901672363},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23027479648590088},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1805993616580963},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.15944784879684448},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11445596814155579},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10061031579971313}],"concepts":[{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.6785722374916077},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.614149272441864},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5713525414466858},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.506091296672821},{"id":"https://openalex.org/C2778220771","wikidata":"https://www.wikidata.org/wiki/Q1522579","display_name":"Substitution (logic)","level":2,"score":0.49017056822776794},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.48112788796424866},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4620710015296936},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4446316659450531},{"id":"https://openalex.org/C165464430","wikidata":"https://www.wikidata.org/wiki/Q1570441","display_name":"Parameterized complexity","level":2,"score":0.42832961678504944},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.4139925241470337},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4122507572174072},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33730053901672363},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23027479648590088},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1805993616580963},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.15944784879684448},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11445596814155579},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10061031579971313},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gkt453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt453","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W398/16943837/gkt453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23729471","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23729471","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2686104","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692104","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.798.2250","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.798.2250","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/68/7b/gkt453.PMC3692104.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.828.3475","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.828.3475","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/41/W1/W398.full.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.850.1943","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.850.1943","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2013/05/31/nar.gkt453.full.pdf","raw_type":"text"},{"id":"pmh:oai:eprints.soton.ac.uk:353561","is_oa":false,"landing_page_url":"https://eprints.soton.ac.uk/353561/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401019","display_name":"ePrints Soton (University of Southampton)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I43439940","host_organization_name":"University of Southampton","host_organization_lineage":["https://openalex.org/I43439940"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/104016","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/104016","pdf_url":null,"source":{"id":"https://openalex.org/S4306401400","display_name":"Conicet","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210104196","host_organization_name":"Centro Cient\u00edfico Tecnol\u00f3gico - Nordeste","host_organization_lineage":["https://openalex.org/I4210104196"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt453","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt453","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W398/16943837/gkt453.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Reduced inequalities","score":0.699999988079071,"id":"https://metadata.un.org/sdg/10"}],"awards":[{"id":"https://openalex.org/G2439265903","display_name":null,"funder_award_id":"CONICET","funder_id":"https://openalex.org/F4320323257","funder_display_name":"Universidad de Buenos Aires"},{"id":"https://openalex.org/G8816116920","display_name":null,"funder_award_id":"1004/11","funder_id":"https://openalex.org/F4320321594","funder_display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas"}],"funders":[{"id":"https://openalex.org/F4320320277","display_name":"University of Southampton","ror":"https://ror.org/01ryk1543"},{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"},{"id":"https://openalex.org/F4320323257","display_name":"Universidad de Buenos Aires","ror":"https://ror.org/0081fs513"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1978920362.pdf","grobid_xml":"https://content.openalex.org/works/W1978920362.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1889215381","https://openalex.org/W1970074020","https://openalex.org/W1995172756","https://openalex.org/W2003852785","https://openalex.org/W2009435671","https://openalex.org/W2017519756","https://openalex.org/W2030028095","https://openalex.org/W2040548339","https://openalex.org/W2048290645","https://openalex.org/W2049888624","https://openalex.org/W2053929098","https://openalex.org/W2055898129","https://openalex.org/W2058206198","https://openalex.org/W2065385636","https://openalex.org/W2076048958","https://openalex.org/W2077235131","https://openalex.org/W2089035513","https://openalex.org/W2096339761","https://openalex.org/W2096619551","https://openalex.org/W2097744604","https://openalex.org/W2099667027","https://openalex.org/W2101036007","https://openalex.org/W2102424972","https://openalex.org/W2113030357","https://openalex.org/W2119908016","https://openalex.org/W2127362915","https://openalex.org/W2132122858","https://openalex.org/W2133671332","https://openalex.org/W2142635246","https://openalex.org/W2144901174","https://openalex.org/W2145268834","https://openalex.org/W2147466870","https://openalex.org/W2154414334","https://openalex.org/W2156728093","https://openalex.org/W2157127485","https://openalex.org/W2157218096","https://openalex.org/W2158714788","https://openalex.org/W2591756625","https://openalex.org/W3047916294","https://openalex.org/W3199943451","https://openalex.org/W6654563908","https://openalex.org/W6681399096","https://openalex.org/W6800717233","https://openalex.org/W7075744841"],"related_works":["https://openalex.org/W2946599741","https://openalex.org/W2153414768","https://openalex.org/W2464070928","https://openalex.org/W2593264178","https://openalex.org/W2043066834","https://openalex.org/W3171039768","https://openalex.org/W2136856901","https://openalex.org/W3212854871","https://openalex.org/W646353556","https://openalex.org/W2141010032"],"abstract_inverted_index":{"The":[0,50,80,103],"BeEP":[1,53,81,168,183],"Server":[2],"(http://www.embnet.qb.fcen.uba.ar/embnet/beep.php)":[3],"is":[4,19,57,109,169,184],"an":[5,30],"online":[6],"resource":[7],"aimed":[8],"to":[9,21,58,98,188,199],"help":[10],"in":[11,46,69,139],"the":[12,61,93,129,154,173,201,205],"endgame":[13],"of":[14,26,33,72,86,95,105,143,151,157,171,204],"protein":[15,28,78,87,97,160],"structure":[16,94],"prediction.":[17],"It":[18],"able":[20],"rank":[22],"submitted":[23],"structural":[24,40,66,130,135,190],"models":[25,174,193],"a":[27,36,70,76,84,96,140,149],"through":[29,111],"explicit":[31],"use":[32],"evolutionary":[34],"information,":[35],"criterion":[37],"differing":[38],"from":[39,60,65,115,133,153],"or":[41,178],"energetic":[42],"considerations":[43],"commonly":[44],"used":[45],"other":[47],"assessment":[48,147],"programs.":[49],"idea":[51],"behind":[52],"(Best":[54],"Evolutionary":[55],"Pattern)":[56],"benefit":[59],"substitution":[62,101,107],"pattern":[63],"derived":[64,132],"constraints":[67,131],"present":[68],"set":[71],"homologous":[73,144],"proteins":[74,152],"adopting":[75],"given":[77,195],"conformation.":[79],"method":[82],"uses":[83],"model":[85,136],"evolution":[88],"that":[89,167],"takes":[90],"into":[91],"account":[92],"build":[99],"site-specific":[100],"matrices.":[102],"suitability":[104],"these":[106],"matrices":[108],"assessed":[110],"maximum":[112],"likelihood":[113],"calculations":[114],"which":[116],"position-specific":[117],"and":[118,175,194],"global":[119],"scores":[120,125],"can":[121],"be":[122],"derived.":[123],"These":[124],"estimate":[126],"how":[127],"well":[128],"each":[134],"are":[137],"represented":[138],"sequence":[141],"alignment":[142],"proteins.":[145],"Our":[146],"on":[148],"subset":[150],"Critical":[155],"Assessment":[156],"techniques":[158],"for":[159],"Structure":[161],"Prediction":[162],"(CASP)":[163],"experiment":[164],"has":[165],"shown":[166],"capable":[170],"discriminating":[172],"selecting":[176],"one":[177],"more":[179],"native-like":[180],"structures.":[181],"Moreover,":[182],"not":[185],"explicitly":[186],"parameterized":[187],"find":[189],"similarities":[191],"between":[192],"targets,":[196],"potentially":[197],"helping":[198],"explore":[200],"conformational":[202],"ensemble":[203],"native":[206],"state.":[207]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
