{"id":"https://openalex.org/W2145974700","doi":"https://doi.org/10.1093/nar/gkt449","title":"antiSMASH 2.0\u2014a versatile platform for genome mining of secondary metabolite producers","display_name":"antiSMASH 2.0\u2014a versatile platform for genome mining of secondary metabolite producers","publication_year":2013,"publication_date":"2013-05-21","ids":{"openalex":"https://openalex.org/W2145974700","doi":"https://doi.org/10.1093/nar/gkt449","mag":"2145974700","pmid":"https://pubmed.ncbi.nlm.nih.gov/23737449"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt449","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W204/16943787/gkt449.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W204/16943787/gkt449.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018360029","display_name":"Kai Blin","orcid":"https://orcid.org/0000-0003-3764-6051"},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kai Blin","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034845813","display_name":"Marnix H. Medema","orcid":"https://orcid.org/0000-0002-2191-2821"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Marnix H. Medema","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","Microbial Physiology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Microbial Physiology","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016402421","display_name":"Daniyal Kazempour","orcid":"https://orcid.org/0000-0002-2063-2756"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","NL"],"is_corresponding":false,"raw_author_name":"Daniyal Kazempour","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","Univ Tubingen, Eberhard Karls University of Tubingen, Interfac Inst Microbiol & Infect Med Tubingen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Univ Tubingen, Eberhard Karls University of Tubingen, Interfac Inst Microbiol & Infect Med Tubingen","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050241478","display_name":"Michael A. Fischbach","orcid":"https://orcid.org/0000-0003-3079-8247"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["NL","US"],"is_corresponding":false,"raw_author_name":"Michael A. Fischbach","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","Univ Calif San Francisco, University of California San Francisco, University of California System, Dept Bioengn & Therapeut Sci"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Univ Calif San Francisco, University of California San Francisco, University of California System, Dept Bioengn & Therapeut Sci","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070145336","display_name":"Rainer Breitling","orcid":"https://orcid.org/0000-0001-7173-0922"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rainer Breitling","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","university of Groningen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"university of Groningen","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066686497","display_name":"Eriko Takano","orcid":"https://orcid.org/0000-0002-6791-3256"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Eriko Takano","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","university of Groningen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"university of Groningen","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086274481","display_name":"Tilmann Weber","orcid":"https://orcid.org/0000-0002-8260-5120"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]},{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE","NL"],"is_corresponding":true,"raw_author_name":"Tilmann Weber","raw_affiliation_strings":["Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","Univ Tubingen, Eberhard Karls University of Tubingen, Interfac Inst Microbiol & Infect Med Tubingen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Interfaculty Institute of Microbiology and Infection Medicine T\u00fcbingen, Eberhard Karls University T\u00fcbingen, 72076, Germany, 2 Department of Microbial Physiology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 3 Groningen Bioinformatics Centre, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, 9747 AG, The Netherlands, 4 Department of Bioengineering and Therapeutic Sciences and California Institute for Quantitative Biosciences, University of California San Francisco, CA 94158, USA and 5 Manchester Institute of Biotechnology, Faculty of Life Sciences, University of Manchester, M1 7DN, UK","institution_ids":["https://openalex.org/I169381384"]},{"raw_affiliation_string":"Univ Tubingen, Eberhard Karls University of Tubingen, Interfac Inst Microbiol & Infect Med Tubingen","institution_ids":["https://openalex.org/I8087733"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5086274481"],"corresponding_institution_ids":["https://openalex.org/I169381384","https://openalex.org/I8087733"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":126.4635,"has_fulltext":true,"cited_by_count":806,"citation_normalized_percentile":{"value":0.99994432,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"41","issue":"W1","first_page":"W204","last_page":"W212"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10252","display_name":"Microbial Natural Products and Biosynthesis","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7274193167686462},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.696649432182312},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6794456839561462},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.636106550693512},{"id":"https://openalex.org/keywords/polyketide","display_name":"Polyketide","score":0.5430741310119629},{"id":"https://openalex.org/keywords/secondary-metabolite","display_name":"Secondary metabolite","score":0.523313045501709},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5040218234062195},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3668847680091858},{"id":"https://openalex.org/keywords/biosynthesis","display_name":"Biosynthesis","score":0.31516242027282715},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28212395310401917},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.09045824408531189}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7274193167686462},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.696649432182312},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6794456839561462},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.636106550693512},{"id":"https://openalex.org/C2778635478","wikidata":"https://www.wikidata.org/wiki/Q516751","display_name":"Polyketide","level":4,"score":0.5430741310119629},{"id":"https://openalex.org/C2777347573","wikidata":"https://www.wikidata.org/wiki/Q522244","display_name":"Secondary metabolite","level":3,"score":0.523313045501709},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5040218234062195},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3668847680091858},{"id":"https://openalex.org/C553450214","wikidata":"https://www.wikidata.org/wiki/Q851162","display_name":"Biosynthesis","level":3,"score":0.31516242027282715},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28212395310401917},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.09045824408531189}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D053898","descriptor_name":"Biosynthetic Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gkt449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt449","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W204/16943787/gkt449.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23737449","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23737449","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2686088","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692088","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/6f8aa5a4-b480-4540-8a4c-7bcf10cde3b7","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/6f8aa5a4-b480-4540-8a4c-7bcf10cde3b7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Blin, K, Medema, M H, Kazempour, D, Fischbach, M A, Breitling, R, Takano, E & Weber, T 2013, 'antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.', Nucleic acids research., vol. 41, pp. W204-212. https://doi.org/10.1093/nar/gkt449","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.rug.nl:publications/05eea83a-4ad3-4555-a4c6-7c94c5c824b7","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/05eea83a-4ad3-4555-a4c6-7c94c5c824b7","pdf_url":"https://pure.rug.nl/ws/files/6799417/2013NuclAcidsResBlin.pdf","source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Blin, K, Medema, M H, Kazempour, D, Fischbach, M A, Breitling, R, Takano, E & Weber, T 2013, 'antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers', Nucleic Acids Research, vol. 41, no. W1, pp. W204-W212. https://doi.org/10.1093/nar/gkt449","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/6f8aa5a4-b480-4540-8a4c-7bcf10cde3b7","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/antismash-20a-versatile-platform-for-genome-mining-of-secondary-metabolite-producers(6f8aa5a4-b480-4540-8a4c-7bcf10cde3b7).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Blin, K, Medema, M H, Kazempour, D, Fischbach, M A, Breitling, R, Takano, E & Weber, T 2013, 'antiSMASH 2.0--a versatile platform for genome mining of secondary metabolite producers.', Nucleic acids research., vol. 41, pp. W204-212. https://doi.org/10.1093/nar/gkt449","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.rug.nl:openaire_cris_publications/05eea83a-4ad3-4555-a4c6-7c94c5c824b7","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/05eea83a-4ad3-4555-a4c6-7c94c5c824b7","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Blin, K, Medema, M H, Kazempour, D, Fischbach, M A, Breitling, R, Takano, E & Weber, T 2013, 'antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers', Nucleic Acids Research, vol. 41, no. W1, pp. W204-W212. https://doi.org/10.1093/nar/gkt449","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt449","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt449","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W204/16943787/gkt449.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G186860024","display_name":null,"funder_award_id":"0315585A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3321759420","display_name":null,"funder_award_id":"STW 10463","funder_id":"https://openalex.org/F4320334893","funder_display_name":"Stichting voor de Technische Wetenschappen"},{"id":"https://openalex.org/G7229234410","display_name":null,"funder_award_id":"10463","funder_id":"https://openalex.org/F4320334893","funder_display_name":"Stichting voor de Technische Wetenschappen"}],"funders":[{"id":"https://openalex.org/F4320311052","display_name":"Deutsches Zentrum f\u00fcr Infektionsforschung","ror":"https://ror.org/028s4q594"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320334893","display_name":"Stichting voor de Technische Wetenschappen","ror":"https://ror.org/057tq3593"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145974700.pdf"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W180998290","https://openalex.org/W1900861636","https://openalex.org/W1934400729","https://openalex.org/W1964232618","https://openalex.org/W1965936526","https://openalex.org/W1970413517","https://openalex.org/W1975439502","https://openalex.org/W1988301093","https://openalex.org/W1992716708","https://openalex.org/W2011700260","https://openalex.org/W2013619747","https://openalex.org/W2041242124","https://openalex.org/W2054268604","https://openalex.org/W2062185057","https://openalex.org/W2069969741","https://openalex.org/W2086953382","https://openalex.org/W2094402554","https://openalex.org/W2106658338","https://openalex.org/W2108313755","https://openalex.org/W2117047085","https://openalex.org/W2131887397","https://openalex.org/W2135639274","https://openalex.org/W2137490801","https://openalex.org/W2138122982","https://openalex.org/W2141885858","https://openalex.org/W2148615699","https://openalex.org/W2156202011","https://openalex.org/W2166287003","https://openalex.org/W2167918062","https://openalex.org/W2168882468","https://openalex.org/W2171908015","https://openalex.org/W4320301318","https://openalex.org/W6668064075"],"related_works":["https://openalex.org/W2062022081","https://openalex.org/W2148964398","https://openalex.org/W1970517048","https://openalex.org/W1980301840","https://openalex.org/W2006582757","https://openalex.org/W4293101810","https://openalex.org/W1730334122","https://openalex.org/W4246165365","https://openalex.org/W2610879881","https://openalex.org/W2751651035"],"abstract_inverted_index":{"Microbial":[0],"secondary":[1,121,192],"metabolites":[2],"are":[3],"a":[4,21,35,64],"potent":[5],"source":[6],"of":[7,14,71,82,92,101,120,140,171],"antibiotics":[8],"and":[9,28,131,154,189],"other":[10],"pharmaceuticals.":[11],"Genome":[12],"mining":[13],"their":[15,26],"biosynthetic":[16,194],"gene":[17],"clusters":[18],"has":[19,109,161],"become":[20],"key":[22],"method":[23],"to":[24,116,152,164],"accelerate":[25],"identification":[27],"characterization.":[29],"In":[30],"2011,":[31],"we":[32,44],"developed":[33],"antiSMASH,":[34],"web-based":[36],"analysis":[37,91,100],"platform":[38],"that":[39,67],"automates":[40],"this":[41],"process.":[42],"Here,":[43],"present":[45],"the":[46,56,90,114,137,141,169,183],"highly":[47],"improved":[48],"antiSMASH":[49,59,77,107,158,181],"2.0":[50,78,108,182],"release,":[51],"available":[52],"at":[53],"http://antismash.secondarymetabolites.org/.":[54],"For":[55],"new":[57,177],"version,":[58],"was":[60],"entirely":[61],"re-designed":[62],"using":[63],"plug-and-play":[65],"concept":[66],"allows":[68,89],"easy":[69],"integration":[70],"novel":[72,191],"predictor":[73],"or":[74],"output":[75],"modules.":[76],"now":[79,105,146],"supports":[80],"input":[81],"multiple":[83,96],"related":[84],"sequences":[85,103],"simultaneously":[86],"(multi-FASTA/GenBank/EMBL),":[87],"which":[88],"draft":[93],"genomes":[94],"comprising":[95],"contigs.":[97],"Moreover,":[98],"direct":[99],"protein":[102],"is":[104,145],"possible.":[106],"also":[110,147],"been":[111,162],"equipped":[112],"with":[113],"capacity":[115],"detect":[117],"additional":[118],"classes":[119],"metabolites,":[122],"including":[123],"oligosaccharide":[124],"antibiotics,":[125],"phenazines,":[126],"thiopeptides,":[127],"homo-serine":[128],"lactones,":[129],"phosphonates":[130],"furans.":[132],"The":[133,157,176],"algorithm":[134],"for":[135,187],"predicting":[136],"core":[138],"structure":[139],"cluster":[142],"end":[143],"product":[144],"covering":[148],"lantipeptides,":[149],"in":[150,168,196],"addition":[151],"polyketides":[153],"non-ribosomal":[155],"peptides.":[156],"ClusterBlast":[159],"functionality":[160],"extended":[163],"identify":[165],"sub-clusters":[166],"involved":[167],"biosynthesis":[170],"specific":[172],"chemical":[173],"building":[174],"blocks.":[175],"features":[178],"currently":[179],"make":[180],"most":[184],"comprehensive":[185],"resource":[186],"identifying":[188],"analyzing":[190],"metabolite":[193],"pathways":[195],"microorganisms.":[197]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":22},{"year":2023,"cited_by_count":23},{"year":2022,"cited_by_count":31},{"year":2021,"cited_by_count":41},{"year":2020,"cited_by_count":45},{"year":2019,"cited_by_count":53},{"year":2018,"cited_by_count":58},{"year":2017,"cited_by_count":80},{"year":2016,"cited_by_count":108},{"year":2015,"cited_by_count":178},{"year":2014,"cited_by_count":123},{"year":2013,"cited_by_count":21}],"updated_date":"2026-06-17T06:14:20.161405","created_date":"2025-10-10T00:00:00"}