{"id":"https://openalex.org/W2032861672","doi":"https://doi.org/10.1093/nar/gkt430","title":"miRmap web: comprehensive microRNA target prediction online","display_name":"miRmap web: comprehensive microRNA target prediction online","publication_year":2013,"publication_date":"2013-05-28","ids":{"openalex":"https://openalex.org/W2032861672","doi":"https://doi.org/10.1093/nar/gkt430","mag":"2032861672","pmid":"https://pubmed.ncbi.nlm.nih.gov/23716633"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt430","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt430","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W165/16943452/gkt430.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W165/16943452/gkt430.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035856613","display_name":"Charles E. Vejnar","orcid":"https://orcid.org/0000-0002-7132-4534"},"institutions":[{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Charles E. Vejnar","raw_affiliation_strings":["Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland","institution_ids":["https://openalex.org/I114457229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002784854","display_name":"Matthias Blum","orcid":"https://orcid.org/0000-0001-5773-4724"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]},{"id":"https://openalex.org/I114457229","display_name":"University of Geneva","ror":"https://ror.org/01swzsf04","country_code":"CH","type":"education","lineage":["https://openalex.org/I114457229"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH","GB"],"is_corresponding":false,"raw_author_name":"Matthias Blum","raw_affiliation_strings":["Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, 2Swiss Institute of Bioinformatics, Geneva, Switzerland and 3Imperial College London, South Kensington Campus, London, UK","1Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, 2Swiss Institute of Bioinformatics, Geneva, Switzerland and 3Imperial College London, South Kensington Campus, London, UK"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, 2Swiss Institute of Bioinformatics, Geneva, Switzerland and 3Imperial College London, South Kensington Campus, London, UK","institution_ids":["https://openalex.org/I114457229","https://openalex.org/I12708293","https://openalex.org/I47508984"]},{"raw_affiliation_string":"1Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, 2Swiss Institute of Bioinformatics, Geneva, Switzerland and 3Imperial College London, South Kensington Campus, London, UK","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029893038","display_name":"Evgeny M. Zdobnov","orcid":"https://orcid.org/0000-0002-5178-1498"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Evgeny M. Zdobnov","raw_affiliation_strings":["1Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, 2Swiss Institute of Bioinformatics, Geneva, Switzerland and 3Imperial College London, South Kensington Campus, London, UK"],"affiliations":[{"raw_affiliation_string":"1Department of Genetic Medicine and Development, University of Geneva Medical School, Geneva, Switzerland, 2Swiss Institute of Bioinformatics, Geneva, Switzerland and 3Imperial College London, South Kensington Campus, London, UK","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5035856613"],"corresponding_institution_ids":["https://openalex.org/I114457229"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.333,"has_fulltext":false,"cited_by_count":187,"citation_normalized_percentile":{"value":0.87777936,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"41","issue":"W1","first_page":"W165","last_page":"W168"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7942646741867065},{"id":"https://openalex.org/keywords/complementarity","display_name":"Complementarity (molecular biology)","score":0.7404513359069824},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.5420542359352112},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5245440602302551},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.44005751609802246},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3359524607658386},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.30730485916137695},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.24959921836853027},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.18304449319839478}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7942646741867065},{"id":"https://openalex.org/C202269582","wikidata":"https://www.wikidata.org/wiki/Q2644277","display_name":"Complementarity (molecular biology)","level":2,"score":0.7404513359069824},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.5420542359352112},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5245440602302551},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.44005751609802246},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3359524607658386},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30730485916137695},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.24959921836853027},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.18304449319839478}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013816","descriptor_name":"Thermodynamics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020413","descriptor_name":"3' Untranslated Regions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkt430","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt430","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W165/16943452/gkt430.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23716633","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23716633","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:unige.ch:unige:30574","is_oa":false,"landing_page_url":"https://archive-ouverte.unige.ch/unige:30574","pdf_url":null,"source":{"id":"https://openalex.org/S4306402259","display_name":"Archive ouverte UNIGE (University of Geneva)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114457229","host_organization_name":"University of Geneva","host_organization_lineage":["https://openalex.org/I114457229"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ISSN: 0305-1048","raw_type":"Text"},{"id":"pmh:oai:doc.rero.ch:294656","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2686044","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692044","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt430","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt430","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W165/16943452/gkt430.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2032861672.pdf","grobid_xml":"https://content.openalex.org/works/W2032861672.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1993799748","https://openalex.org/W2017426710","https://openalex.org/W2026570544","https://openalex.org/W2059073003","https://openalex.org/W2075248128","https://openalex.org/W2075995228","https://openalex.org/W2083765251","https://openalex.org/W2104806799","https://openalex.org/W2118533197","https://openalex.org/W2127640118","https://openalex.org/W2149785901","https://openalex.org/W2150591845","https://openalex.org/W2156154309","https://openalex.org/W2161053574","https://openalex.org/W2162674813","https://openalex.org/W2167852161","https://openalex.org/W4210347168"],"related_works":["https://openalex.org/W2521519254","https://openalex.org/W3139833644","https://openalex.org/W3121651473","https://openalex.org/W3123110765","https://openalex.org/W4383553409","https://openalex.org/W2104948296","https://openalex.org/W1735800226","https://openalex.org/W4285172739","https://openalex.org/W3123208392","https://openalex.org/W4372316851"],"abstract_inverted_index":{"MicroRNAs":[0],"(miRNAs)":[1],"posttranscriptionally":[2],"repress":[3],"the":[4,11,48],"expression":[5],"of":[6,28,105],"protein-coding":[7],"genes.":[8],"Based":[9],"on":[10],"partial":[12],"complementarity":[13],"between":[14],"miRNA":[15,81],"and":[16,56,66,75,92,103,116],"messenger":[17],"RNA":[18],"pairs":[19],"with":[20,43],"a":[21,44,73],"mandatory":[22],"so-called":[23],"'seed'":[24],"sequence,":[25],"many":[26],"thousands":[27],"potential":[29,41],"targets":[30,42,94],"can":[31],"be":[32],"identified.":[33],"Our":[34,68],"open-source":[35],"software":[36],"library,":[37],"miRmap,":[38],"ranks":[39],"these":[40],"biologically":[45],"meaningful":[46],"criterion,":[47],"repression":[49],"strength.":[50],"MiRmap":[51,98],"combines":[52],"thermodynamic,":[53],"evolutionary,":[54],"probabilistic":[55],"sequence-based":[57],"features,":[58],"which":[59],"cover":[60],"features":[61],"from":[62,107],"TargetScan,":[63],"PITA,":[64],"PACMIT":[65],"miRanda.":[67],"miRmap":[69],"web":[70,99],"application":[71],"offers":[72],"user-friendly":[74],"feature-rich":[76],"resource":[77],"for":[78,84,90,95],"browsing":[79],"precomputed":[80],"target":[82],"predictions":[83],"model":[85],"organisms,":[86],"as":[87,89,110,112],"well":[88,111],"predicting":[91],"ranking":[93],"user-submitted":[96],"sequences.":[97],"integrates":[100],"sorting,":[101],"filtering":[102],"exporting":[104],"results":[106],"multiple":[108],"queries,":[109],"providing":[113],"programmatic":[114],"access,":[115],"is":[117],"available":[118],"at":[119],"http://mirmap.ezlab.org.":[120]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":22},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":36},{"year":2020,"cited_by_count":23},{"year":2019,"cited_by_count":15},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}