{"id":"https://openalex.org/W2096403581","doi":"https://doi.org/10.1093/nar/gkt377","title":"STRAW: Species TRee Analysis Web server","display_name":"STRAW: Species TRee Analysis Web server","publication_year":2013,"publication_date":"2013-05-09","ids":{"openalex":"https://openalex.org/W2096403581","doi":"https://doi.org/10.1093/nar/gkt377","mag":"2096403581","pmid":"https://pubmed.ncbi.nlm.nih.gov/23661681"},"language":"ca","primary_location":{"id":"doi:10.1093/nar/gkt377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt377","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W238/3828332/gkt377.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W238/3828332/gkt377.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029857449","display_name":"Timothy I. Shaw","orcid":"https://orcid.org/0000-0002-9316-1924"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Timothy I. Shaw","raw_affiliation_strings":["Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA","1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071263487","display_name":"Zheng Ruan","orcid":"https://orcid.org/0000-0002-4412-4916"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zheng Ruan","raw_affiliation_strings":["Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000690078","display_name":"Travis C. Glenn","orcid":"https://orcid.org/0000-0001-7725-3637"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Travis C. Glenn","raw_affiliation_strings":["Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]},{"raw_affiliation_string":"1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100322345","display_name":"Liang Liu","orcid":"https://orcid.org/0000-0001-9491-8821"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liang Liu","raw_affiliation_strings":["1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA"],"affiliations":[{"raw_affiliation_string":"1Institute of Bioinformatics, University of Georgia, Athens, GA 30602, USA, 2Department of Environmental Health Science, University of Georgia, Athens, GA 30602, USA and 3Department of Statistics, University of Georgia, Athens, GA 30602, USA","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5029857449"],"corresponding_institution_ids":["https://openalex.org/I165733156"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":8.9692,"has_fulltext":false,"cited_by_count":108,"citation_normalized_percentile":{"value":0.98564136,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"41","issue":"W1","first_page":"W238","last_page":"W241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14049","display_name":"Plant and Fungal Species Descriptions","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8885855078697205},{"id":"https://openalex.org/keywords/coalescent-theory","display_name":"Coalescent theory","score":0.8002191781997681},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6312112212181091},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.5679206848144531},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5023996829986572},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4916580319404602},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.38541534543037415},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3711130619049072},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.20937573909759521},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19165989756584167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.17657533288002014},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1215023398399353},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11851713061332703},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10662126541137695},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.09059205651283264}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8885855078697205},{"id":"https://openalex.org/C2554327","wikidata":"https://www.wikidata.org/wiki/Q2698599","display_name":"Coalescent theory","level":4,"score":0.8002191781997681},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6312112212181091},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5679206848144531},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5023996829986572},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4916580319404602},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.38541534543037415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3711130619049072},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.20937573909759521},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19165989756584167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.17657533288002014},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1215023398399353},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11851713061332703},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10662126541137695},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.09059205651283264}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt377","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W238/3828332/gkt377.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23661681","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23661681","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2686081","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692081","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt377","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt377","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W238/3828332/gkt377.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6700000166893005}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310358","display_name":"Achievement Rewards for College Scientists Foundation","ror":"https://ror.org/054awkm93"},{"id":"https://openalex.org/F4320319408","display_name":"Fondation Universit\u00e9 Grenoble Alpes","ror":null},{"id":"https://openalex.org/F4320322361","display_name":"Fondation ARC pour la Recherche sur le Cancer","ror":"https://ror.org/0489qz649"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096403581.pdf","grobid_xml":"https://content.openalex.org/works/W2096403581.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1897064680","https://openalex.org/W1999083683","https://openalex.org/W2037654474","https://openalex.org/W2060425093","https://openalex.org/W2084761838","https://openalex.org/W2096641211","https://openalex.org/W2096689134","https://openalex.org/W2097706568","https://openalex.org/W2103546861","https://openalex.org/W2107608009","https://openalex.org/W2108039804","https://openalex.org/W2109028944","https://openalex.org/W2114227052","https://openalex.org/W2117752525","https://openalex.org/W2120323779","https://openalex.org/W2124511083","https://openalex.org/W2125024684","https://openalex.org/W2129589314","https://openalex.org/W2151409320","https://openalex.org/W2160936843","https://openalex.org/W2164086277","https://openalex.org/W3199943451","https://openalex.org/W6674647444","https://openalex.org/W6800717233"],"related_works":["https://openalex.org/W2952954362","https://openalex.org/W3093602888","https://openalex.org/W2762052495","https://openalex.org/W3156045358","https://openalex.org/W2921578049","https://openalex.org/W2581424563","https://openalex.org/W2362218761","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W2088120817"],"abstract_inverted_index":{"The":[0,43,64,95],"coalescent":[1],"methods":[2],"for":[3,29],"species":[4,34,37,69,80,93],"tree":[5,38,81],"reconstruction":[6,30],"are":[7,46],"increasingly":[8],"popular":[9],"because":[10],"they":[11],"can":[12],"accommodate":[13],"coalescence":[14],"and":[15,41,55,77,82],"multilocus":[16],"data":[17,45],"sets.":[18],"Herein,":[19],"we":[20],"present":[21],"STRAW,":[22],"a":[23,47],"web":[24,96],"server":[25],"that":[26],"offers":[27],"workflows":[28],"of":[31,33,49,84],"phylogenies":[32],"using":[35],"three":[36],"methods-MP-EST,":[39],"STAR":[40,54],"NJst.":[42],"input":[44],"collection":[48],"rooted":[50],"gene":[51,60,75,88],"trees":[52,61,76,85,89],"(for":[53,62],"MP-EST":[56],"methods)":[57],"or":[58],"unrooted":[59],"NJst).":[63],"output":[65],"includes":[66],"the":[67,78,91],"estimated":[68,79,92],"tree,":[70],"modified":[71],"Robinson-Foulds":[72],"distances":[73],"between":[74],"visualization":[83],"to":[86],"compare":[87],"with":[90],"tree.":[94],"sever":[97],"is":[98],"available":[99],"at":[100],"http://bioinformatics.publichealth.uga.edu/SpeciesTreeAnalysis/.":[101]},"counts_by_year":[{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":16},{"year":2016,"cited_by_count":20},{"year":2015,"cited_by_count":21},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":7}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
