{"id":"https://openalex.org/W2138631903","doi":"https://doi.org/10.1093/nar/gkt329","title":"CMCompare webserver: comparing RNA families via covariance models","display_name":"CMCompare webserver: comparing RNA families via covariance models","publication_year":2013,"publication_date":"2013-05-02","ids":{"openalex":"https://openalex.org/W2138631903","doi":"https://doi.org/10.1093/nar/gkt329","mag":"2138631903","pmid":"https://pubmed.ncbi.nlm.nih.gov/23640335"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt329","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W499/3822875/gkt329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/W1/W499/3822875/gkt329.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063976174","display_name":"Florian Eggenhofer","orcid":"https://orcid.org/0000-0001-9564-7525"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Florian Eggenhofer","raw_affiliation_strings":["Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria. egg@tbi.univie.ac.at","1Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 2Bioinformatics and Computational Biology Research Group, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria. egg@tbi.univie.ac.at","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"1Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 2Bioinformatics and Computational Biology Research Group, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011771355","display_name":"Ivo L. Hofacker","orcid":"https://orcid.org/0000-0001-7132-0800"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Ivo L. Hofacker","raw_affiliation_strings":["Bioinformatics and Computational Biology Research Group, University of Vienna, Wa hringerstrasse 17, A-1090 Vienna, Austria","Institute for Theoretical Chemistry, University of Vienna, Wa hringerstrasse 17, A-1090 Vienna, Austria and","1Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 2Bioinformatics and Computational Biology Research Group, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Biology Research Group, University of Vienna, Wa hringerstrasse 17, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, Wa hringerstrasse 17, A-1090 Vienna, Austria and","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"1Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 2Bioinformatics and Computational Biology Research Group, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005332412","display_name":"Christian H\u00f6ner zu Siederdissen","orcid":"https://orcid.org/0000-0001-9517-5839"},"institutions":[{"id":"https://openalex.org/I129774422","display_name":"University of Vienna","ror":"https://ror.org/03prydq77","country_code":"AT","type":"education","lineage":["https://openalex.org/I129774422"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Christian H\u00f6ner zu Siederdissen","raw_affiliation_strings":["Institute for Theoretical Chemistry, University of Vienna, Wa hringerstrasse 17, A-1090 Vienna, Austria and","1Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 2Bioinformatics and Computational Biology Research Group, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Theoretical Chemistry, University of Vienna, Wa hringerstrasse 17, A-1090 Vienna, Austria and","institution_ids":["https://openalex.org/I129774422"]},{"raw_affiliation_string":"1Institute for Theoretical Chemistry, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria and 2Bioinformatics and Computational Biology Research Group, University of Vienna, W\u00e4hringerstrasse 17, A-1090 Vienna, Austria","institution_ids":["https://openalex.org/I129774422"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":2556,"currency":"EUR","value_usd":2756},"fwci":0.7481,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.72426322,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"41","issue":"W1","first_page":"W499","last_page":"W503"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.727216899394989},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.67207932472229},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5036308169364929},{"id":"https://openalex.org/keywords/covariance","display_name":"Covariance","score":0.48030513525009155},{"id":"https://openalex.org/keywords/nucleic-acid-structure","display_name":"Nucleic acid structure","score":0.42451077699661255},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.41941526532173157},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4101177453994751},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3725593686103821},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.324773907661438},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.16008782386779785},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.14235654473304749},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.10669010877609253},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09959056973457336}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.727216899394989},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.67207932472229},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5036308169364929},{"id":"https://openalex.org/C178650346","wikidata":"https://www.wikidata.org/wiki/Q201984","display_name":"Covariance","level":2,"score":0.48030513525009155},{"id":"https://openalex.org/C126142528","wikidata":"https://www.wikidata.org/wiki/Q3771876","display_name":"Nucleic acid structure","level":4,"score":0.42451077699661255},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.41941526532173157},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4101177453994751},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3725593686103821},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.324773907661438},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16008782386779785},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.14235654473304749},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.10669010877609253},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09959056973457336},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D022661","descriptor_name":"RNA, Untranslated","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkt329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt329","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W499/3822875/gkt329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:23640335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23640335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:info:fedora/oai:univie.ac.at:o:502785","is_oa":true,"landing_page_url":"https://phaidra.univie.ac.at/o:502785","pdf_url":null,"source":{"id":"https://openalex.org/S4306401993","display_name":"Phaidra (Universit\u00e4t Wien)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129774422","host_organization_name":"University of Vienna","host_organization_lineage":["https://openalex.org/I129774422"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN:0305-1048","raw_type":"article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.817.401","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.817.401","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/10/f8/gkt329.PMC3692125.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2686125","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3692125","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt329","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt329","pdf_url":"https://academic.oup.com/nar/article-pdf/41/W1/W499/3822875/gkt329.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/1","display_name":"No poverty"}],"awards":[{"id":"https://openalex.org/G3118548002","display_name":null,"funder_award_id":"SFB F43","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G4394249346","display_name":"RNA Biology","funder_award_id":"W1207","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G5933869546","display_name":null,"funder_award_id":"W1207-B09","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G8011166725","display_name":null,"funder_award_id":"SFB F43 RNA","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2138631903.pdf","grobid_xml":"https://content.openalex.org/works/W2138631903.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W184339100","https://openalex.org/W1842847600","https://openalex.org/W2011368877","https://openalex.org/W2045332342","https://openalex.org/W2055043387","https://openalex.org/W2073858449","https://openalex.org/W2121918723","https://openalex.org/W2122505151","https://openalex.org/W2122914162","https://openalex.org/W2128976922","https://openalex.org/W2129913453","https://openalex.org/W2130682154","https://openalex.org/W2141885858","https://openalex.org/W2158381555","https://openalex.org/W2166706771","https://openalex.org/W3147254695","https://openalex.org/W4210623056","https://openalex.org/W6638918635","https://openalex.org/W6678647055","https://openalex.org/W6679561509"],"related_works":["https://openalex.org/W1472344963","https://openalex.org/W3093937951","https://openalex.org/W2554722417","https://openalex.org/W2470187006","https://openalex.org/W1640318440","https://openalex.org/W2581348958","https://openalex.org/W2264054990","https://openalex.org/W2581888268","https://openalex.org/W2954917112","https://openalex.org/W2902683473"],"abstract_inverted_index":{"A":[0],"standard":[1],"method":[2],"for":[3,20,36,54,114,149],"the":[4,86,103,109,115,122,126,169,175],"identification":[5],"of":[6,111,136,141,151],"novel":[7],"non-coding":[8,117],"RNAs":[9],"is":[10,159,172],"homology":[11],"search":[12],"by":[13],"covariance":[14],"models.":[15,89,139],"Covariance":[16],"models":[17,35,75,79,97,101,113],"are":[18,34],"constructed":[19],"specific":[21],"RNA":[22,73,118],"families":[23,38],"with":[24,80],"common":[25],"sequence":[26],"and":[27,65,83,168],"structure":[28],"(e.g.":[29],"transfer":[30],"RNAs).":[31],"Currently,":[32],"there":[33],"2208":[37],"available":[39,173],"from":[40],"Rfam.":[41],"Before":[42],"being":[43],"included":[44],"into":[45],"a":[46,48],"database,":[47],"proposed":[49],"family":[50,74,138,142],"should":[51],"be":[52],"tested":[53],"specificity":[55,82],"(finding":[56,62],"only":[57],"true":[58],"homolog":[59],"sequences),":[60],"sensitivity":[61],"remote":[63],"homologs)":[64],"uniqueness.":[66],"The":[67,90,157],"CMCompare":[68],"webserver":[69],"(CMCws)":[70],"compares":[71],"Infernal":[72],"to":[76,94,107],"(i)":[77],"identify":[78],"poor":[81],"(ii)":[84],"explore":[85,125],"relationship":[87,127],"between":[88,128],"CMCws":[91,158],"provides":[92,144],"options":[93],"compare":[95],"new":[96],"against":[98],"all":[99],"existing":[100],"in":[102,146],"current":[104],"Rfam":[105],"database":[106],"avoid":[108],"construction":[110],"duplicate":[112],"same":[116],"family.":[119],"In":[120],"addition,":[121],"user":[123],"can":[124],"two":[129],"or":[130],"more":[131],"models,":[132],"including":[133],"whole":[134],"sets":[135],"user-created":[137],"Visualization":[140],"relationships":[143],"help":[145],"evaluating":[147],"candidates":[148],"clusters":[150],"biologically":[152],"related":[153],"families,":[154],"called":[155],"clans.":[156],"freely":[160],"available,":[161],"without":[162],"any":[163],"login":[164],"requirements,":[165],"at":[166],"http://rna.tbi.univie.ac.at/cmcws,":[167],"underlying":[170],"software":[171],"under":[174],"GPL-3":[176],"license.":[177]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
