{"id":"https://openalex.org/W2099230441","doi":"https://doi.org/10.1093/nar/gkt1282","title":"The 2014<i>Nucleic Acids Research</i>Database Issue and an updated NAR online Molecular Biology Database Collection","display_name":"The 2014<i>Nucleic Acids Research</i>Database Issue and an updated NAR online Molecular Biology Database Collection","publication_year":2013,"publication_date":"2013-12-06","ids":{"openalex":"https://openalex.org/W2099230441","doi":"https://doi.org/10.1093/nar/gkt1282","mag":"2099230441","pmid":"https://pubmed.ncbi.nlm.nih.gov/24316579"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1282","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1282","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1/3669480/gkt1282.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1/3669480/gkt1282.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014883542","display_name":"Xos\u00e9 M. Fern\u00e1ndez","orcid":"https://orcid.org/0000-0001-7139-6215"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xos\u00e9 M. Fern\u00e1ndez-Su\u00e1rez","raw_affiliation_strings":["Life Technologies, Inchinnan Business Park, Paisley PA4 9RF, UK, Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK and National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"Life Technologies, Inchinnan Business Park, Paisley PA4 9RF, UK, Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK and National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":[]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009636964","display_name":"Daniel J. Rigden","orcid":"https://orcid.org/0000-0002-7565-8937"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Daniel J. Rigden","raw_affiliation_strings":["Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK and","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"Institute of Integrative Biology, University of Liverpool, Crown Street, Liverpool L69 7ZB, UK and","institution_ids":["https://openalex.org/I146655781"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077552473","display_name":"Michael Y. Galperin","orcid":"https://orcid.org/0000-0002-2265-5572"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Y. Galperin","raw_affiliation_strings":["National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","National Institutes of Health, Bethesda, United States"],"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information (NCBI), National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA","institution_ids":["https://openalex.org/I4210109390","https://openalex.org/I1299303238"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, United States","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014883542"],"corresponding_institution_ids":["https://openalex.org/I1299303238"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":13.4538,"has_fulltext":true,"cited_by_count":115,"citation_normalized_percentile":{"value":0.99288367,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D1","last_page":"D6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/uniprot","display_name":"UniProt","score":0.8055421113967896},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6831986308097839},{"id":"https://openalex.org/keywords/drugbank","display_name":"DrugBank","score":0.6620154976844788},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.6358723044395447},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.6050098538398743},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.582760751247406},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5484243035316467},{"id":"https://openalex.org/keywords/online-database","display_name":"Online database","score":0.5200621485710144},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.5131943821907043},{"id":"https://openalex.org/keywords/compendium","display_name":"Compendium","score":0.46659162640571594},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4312073290348053},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3599894642829895},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32581019401550293},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.30420276522636414},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28736650943756104},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.25927507877349854},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16034740209579468},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.11196205019950867},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.10628163814544678}],"concepts":[{"id":"https://openalex.org/C202264299","wikidata":"https://www.wikidata.org/wiki/Q905695","display_name":"UniProt","level":3,"score":0.8055421113967896},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6831986308097839},{"id":"https://openalex.org/C155261790","wikidata":"https://www.wikidata.org/wiki/Q1122544","display_name":"DrugBank","level":3,"score":0.6620154976844788},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.6358723044395447},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.6050098538398743},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.582760751247406},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5484243035316467},{"id":"https://openalex.org/C2777715827","wikidata":"https://www.wikidata.org/wiki/Q7094076","display_name":"Online database","level":2,"score":0.5200621485710144},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.5131943821907043},{"id":"https://openalex.org/C2778473407","wikidata":"https://www.wikidata.org/wiki/Q1459574","display_name":"Compendium","level":2,"score":0.46659162640571594},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4312073290348053},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3599894642829895},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32581019401550293},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.30420276522636414},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28736650943756104},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.25927507877349854},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16034740209579468},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.11196205019950867},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.10628163814544678},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008967","descriptor_name":"Molecular Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt1282","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1282","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1/3669480/gkt1282.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24316579","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24316579","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2943163","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965027","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1282","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1282","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1/3669480/gkt1282.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2099230441.pdf","grobid_xml":"https://content.openalex.org/works/W2099230441.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1964733653","https://openalex.org/W1965910641","https://openalex.org/W1973234126","https://openalex.org/W1977278302","https://openalex.org/W1982390234","https://openalex.org/W1987819535","https://openalex.org/W1989277387","https://openalex.org/W2008510122","https://openalex.org/W2009393104","https://openalex.org/W2011486440","https://openalex.org/W2027278749","https://openalex.org/W2030853720","https://openalex.org/W2031616673","https://openalex.org/W2038861887","https://openalex.org/W2064604026","https://openalex.org/W2074584798","https://openalex.org/W2077991901","https://openalex.org/W2084014179","https://openalex.org/W2085707114","https://openalex.org/W2090444419","https://openalex.org/W2091506983","https://openalex.org/W2097632784","https://openalex.org/W2099370598","https://openalex.org/W2099477841","https://openalex.org/W2100647041","https://openalex.org/W2103296919","https://openalex.org/W2106383137","https://openalex.org/W2112701562","https://openalex.org/W2116868464","https://openalex.org/W2122559203","https://openalex.org/W2128601422","https://openalex.org/W2131562240","https://openalex.org/W2143370123","https://openalex.org/W2147128567","https://openalex.org/W2148378515","https://openalex.org/W2151350595","https://openalex.org/W2154866190","https://openalex.org/W2156627746","https://openalex.org/W2157970897","https://openalex.org/W2158513960","https://openalex.org/W2161072217","https://openalex.org/W2166657289","https://openalex.org/W4230386739","https://openalex.org/W4230770774","https://openalex.org/W4237335579","https://openalex.org/W4240895940"],"related_works":["https://openalex.org/W2039941094","https://openalex.org/W4386011922","https://openalex.org/W2076586896","https://openalex.org/W2098680190","https://openalex.org/W2107691364","https://openalex.org/W2031708534","https://openalex.org/W2510847435","https://openalex.org/W4389159422","https://openalex.org/W1412967071","https://openalex.org/W2152376949"],"abstract_inverted_index":{"The":[0,216,230],"2014":[1],"Nucleic":[2,108,240],"Acids":[3,241],"Research":[4,242],"Database":[5,69,110,205,221,232],"Issue":[6,233],"includes":[7,180,191],"descriptions":[8],"of":[9,46,52,70,89,137,141,151,166,183,196],"58":[10],"new":[11,97,152,213],"molecular":[12],"biology":[13],"databases":[14,20,51,66],"and":[15,61,82,111,188,211],"recent":[16],"updates":[17,62,101,192],"to":[18,154,173,227],"123":[19],"previously":[21],"featured":[22],"in":[23,58,201],"NAR":[24,217],"or":[25],"other":[26,160],"journals.":[27],"For":[28],"convenience,":[29],"the":[30,44,53,96,112,120,135,138,155,159,163,194,208,239],"issue":[31,48,178],"is":[32,85,234],"now":[33],"divided":[34],"into":[35],"eight":[36],"sections":[37],"that":[38],"reflect":[39],"major":[40],"subject":[41],"categories.":[42],"Among":[43],"highlights":[45],"this":[47],"are":[49],"six":[50],"transcription":[54],"factor":[55],"binding":[56],"sites":[57],"various":[59],"organisms":[60],"on":[63,102,119,185,193,238],"such":[64],"popular":[65],"as":[67],"CAZy,":[68],"Genomic":[71],"Variants":[72],"(DGV),":[73],"dbGaP,":[74],"DrugBank,":[75],"KEGG,":[76],"miRBase,":[77],"Pfam,":[78],"Reactome,":[79],"SEED,":[80],"TCDB":[81],"UniProt.":[83],"There":[84],"a":[86,181],"strong":[87],"block":[88],"structural":[90],"databases,":[91],"which":[92,148,190],"includes,":[93],"among":[94],"others,":[95],"RNA":[98],"Bricks":[99],"database,":[100],"PDBe,":[103],"PDBsum,":[104],"ArchDB,":[105],"Gene3D,":[106],"ModBase,":[107],"Acid":[109],"recently":[113],"revived":[114],"iPfam":[115],"database.":[116],"An":[117],"update":[118],"NCBI's":[121],"MMDB":[122],"describes":[123,146,162],"VAST+,":[124],"an":[125],"improved":[126],"tool":[127],"for":[128],"protein":[129,175],"structure":[130],"comparison.":[131],"Two":[132],"articles":[133,184],"highlight":[134],"development":[136],"Structural":[139],"Classification":[140],"Proteins":[142],"(SCOP)":[143],"database:":[144],"one":[145,161],"SCOPe,":[147],"automates":[149],"assignment":[150],"structures":[153],"existing":[156],"SCOP":[157],"hierarchy;":[158],"first":[164],"version":[165],"SCOP2,":[167],"with":[168,199],"its":[169],"more":[170],"flexible":[171],"approach":[172],"classifying":[174],"structures.":[176],"This":[177],"also":[179],"collection":[182],"bacterial":[186],"taxonomy":[187],"metagenomics,":[189],"List":[195],"Prokaryotic":[197],"Names":[198],"Standing":[200],"Nomenclature":[202],"(LPSN),":[203],"Ribosomal":[204],"Project":[206],"(RDP),":[207],"Silva/LTP":[209],"project":[210],"several":[212],"metagenomics":[214],"resources.":[215],"online":[218,237],"Molecular":[219],"Biology":[220],"Collection,":[222],"http://www.oxfordjournals.org/nar/database/c/,":[223],"has":[224],"been":[225],"expanded":[226],"1552":[228],"databases.":[229],"entire":[231],"freely":[235],"available":[236],"website":[243],"(http://nar.oxfordjournals.org/).":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":19},{"year":2015,"cited_by_count":37},{"year":2014,"cited_by_count":31},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2016-06-24T00:00:00"}
