{"id":"https://openalex.org/W2151350595","doi":"https://doi.org/10.1093/nar/gkt1244","title":"Ribosomal Database Project: data and tools for high throughput rRNA analysis","display_name":"Ribosomal Database Project: data and tools for high throughput rRNA analysis","publication_year":2013,"publication_date":"2013-11-27","ids":{"openalex":"https://openalex.org/W2151350595","doi":"https://doi.org/10.1093/nar/gkt1244","mag":"2151350595","pmid":"https://pubmed.ncbi.nlm.nih.gov/24288368"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1244","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1244","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D633/16952330/gkt1244.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D633/16952330/gkt1244.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104055957","display_name":"James R. Cole","orcid":null},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James R. Cole","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100417364","display_name":"Qiong Wang","orcid":"https://orcid.org/0000-0001-7798-1554"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qiong Wang","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027977819","display_name":"Jordan Fish","orcid":"https://orcid.org/0000-0001-8039-094X"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jordan A. Fish","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053281874","display_name":"Benli Chai","orcid":"https://orcid.org/0000-0003-4140-4530"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benli Chai","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055327518","display_name":"Donna M. McGarrell","orcid":null},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donna M. McGarrell","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081855118","display_name":"Yanni Sun","orcid":"https://orcid.org/0000-0003-1373-8023"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanni Sun","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036229691","display_name":"C. Titus Brown","orcid":"https://orcid.org/0000-0001-6001-2677"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Titus Brown","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040689488","display_name":"Andrea Porras\u2010Alfaro","orcid":"https://orcid.org/0000-0002-9053-7973"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrea Porras-Alfaro","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051362616","display_name":"Cheryl R. Kuske","orcid":"https://orcid.org/0000-0001-6586-8415"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cheryl R. Kuske","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041807449","display_name":"James M. Tiedje","orcid":"https://orcid.org/0000-0002-8992-6218"},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James M. Tiedje","raw_affiliation_strings":["Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2 Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3 Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4 Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5 Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824, USA, 2Computer Science and Engineering, Michigan State University, East Lansing, MI 48824, USA, 3Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA, 4Biological Sciences, Western Illinois University, Malcomb, IL 61455, USA and 5Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA","institution_ids":["https://openalex.org/I87216513","https://openalex.org/I1343871089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5104055957"],"corresponding_institution_ids":["https://openalex.org/I1343871089","https://openalex.org/I87216513"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":79.225,"has_fulltext":true,"cited_by_count":4622,"citation_normalized_percentile":{"value":0.99973373,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D633","last_page":"D642"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7731386423110962},{"id":"https://openalex.org/keywords/ribosomal-rna","display_name":"Ribosomal RNA","score":0.6951042413711548},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5376623272895813},{"id":"https://openalex.org/keywords/microbial-ecology","display_name":"Microbial ecology","score":0.4763082265853882},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3765098452568054},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2930828928947449},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.15880581736564636}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7731386423110962},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.6951042413711548},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5376623272895813},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.4763082265853882},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3765098452568054},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2930828928947449},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.15880581736564636}],"mesh":[{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001105","descriptor_name":"Archaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005658","descriptor_name":"Fungi","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015345","descriptor_name":"Oligonucleotide Probes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019766","descriptor_name":"Genes, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020459","descriptor_name":"Genes, rRNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064351","descriptor_name":"Genes, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064351","descriptor_name":"Genes, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064351","descriptor_name":"Genes, Microbial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkt1244","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1244","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D633/16952330/gkt1244.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24288368","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24288368","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:ark:/13030/qt27w7h7m9","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt27w7h7m9","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/27w7h7m9","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research, vol 42, iss D1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2943175","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965039","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1244","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1244","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D633/16952330/gkt1244.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5841262336","display_name":null,"funder_award_id":"U01 HL098961","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G7447197237","display_name":null,"funder_award_id":"P42 ES004911","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G8823769303","display_name":null,"funder_award_id":"UH3 DK083993","funder_id":"https://openalex.org/F4320337357","funder_display_name":"National Institute of Diabetes and Digestive and Kidney Diseases"}],"funders":[{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337357","display_name":"National Institute of Diabetes and Digestive and Kidney Diseases","ror":"https://ror.org/00adh9b73"},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2151350595.pdf","grobid_xml":"https://content.openalex.org/works/W2151350595.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W63411415","https://openalex.org/W1507862068","https://openalex.org/W1974708169","https://openalex.org/W1989978323","https://openalex.org/W1990966781","https://openalex.org/W2006602077","https://openalex.org/W2028286172","https://openalex.org/W2036288429","https://openalex.org/W2045073446","https://openalex.org/W2067665219","https://openalex.org/W2073548709","https://openalex.org/W2077991901","https://openalex.org/W2078008562","https://openalex.org/W2087671769","https://openalex.org/W2096525273","https://openalex.org/W2099249681","https://openalex.org/W2100751585","https://openalex.org/W2103490626","https://openalex.org/W2107594154","https://openalex.org/W2108718991","https://openalex.org/W2111458006","https://openalex.org/W2115838982","https://openalex.org/W2117457769","https://openalex.org/W2120141270","https://openalex.org/W2124351063","https://openalex.org/W2129687578","https://openalex.org/W2130731460","https://openalex.org/W2132548846","https://openalex.org/W2135254590","https://openalex.org/W2136879569","https://openalex.org/W2141152740","https://openalex.org/W2142056356","https://openalex.org/W2142678031","https://openalex.org/W2146235863","https://openalex.org/W2150914285","https://openalex.org/W2151370125","https://openalex.org/W2152885278","https://openalex.org/W2155066423","https://openalex.org/W2158714788","https://openalex.org/W2170747616","https://openalex.org/W2923611692","https://openalex.org/W4230612844","https://openalex.org/W4230784961","https://openalex.org/W6675086559","https://openalex.org/W6679987170","https://openalex.org/W6760729129"],"related_works":["https://openalex.org/W2171277769","https://openalex.org/W2009966535","https://openalex.org/W2088063203","https://openalex.org/W2019988726","https://openalex.org/W2085712549","https://openalex.org/W3033910563","https://openalex.org/W2084739049","https://openalex.org/W2076061307","https://openalex.org/W2055316987","https://openalex.org/W1809187017"],"abstract_inverted_index":{"Ribosomal":[0],"Database":[1],"Project":[2],"(RDP;":[3],"http://rdp.cme.msu.edu/)":[4],"provides":[5],"the":[6,31,112,122],"research":[7],"community":[8],"with":[9,18,94,170],"aligned":[10,60],"and":[11,36,55,61,66,87,116,149,165],"annotated":[12,62],"rRNA":[13,27,70,81],"gene":[14,28],"sequence":[15,118],"data,":[16,145],"along":[17],"tools":[19,37,139,155],"to":[20,23,59,92,104,140,177],"allow":[21],"researchers":[22,169],"analyze":[24],"their":[25],"own":[26],"sequences":[29],"in":[30,40,111],"RDP":[32,34,72,83,132],"framework.":[33],"data":[35],"are":[38,156],"utilized":[39],"fields":[41],"as":[42,44,117,159],"diverse":[43],"human":[45],"health,":[46],"microbial":[47,107],"ecology,":[48],"environmental":[49,106,125],"microbiology,":[50],"nucleic":[51],"acid":[52],"chemistry,":[53],"taxonomy":[54],"phylogenetics.":[56],"In":[57,152],"addition":[58],"collections":[63],"of":[64,77,101,124,138,143],"bacterial":[65],"archaeal":[67],"small":[68],"subunit":[69,80],"genes,":[71],"now":[73,157],"includes":[74],"a":[75],"collection":[76],"fungal":[78,97],"large":[79],"genes.":[82],"tools,":[84],"including":[85,146],"Classifier":[86],"Aligner,":[88],"have":[89,120,127],"been":[90],"updated":[91],"work":[93],"this":[95],"new":[96],"collection.":[98],"The":[99],"use":[100,167],"high-throughput":[102,144],"sequencing":[103],"characterize":[105],"populations":[108],"has":[109],"exploded":[110],"past":[113],"several":[114],"years,":[115],"technologies":[119],"improved,":[121],"sizes":[123],"datasets":[126],"increased.":[128],"With":[129],"release":[130],"11,":[131],"is":[133],"providing":[134],"an":[135],"expanded":[136],"set":[137],"facilitate":[141],"analysis":[142,180],"both":[147],"single-stranded":[148],"paired-end":[150],"reads.":[151],"addition,":[153],"most":[154],"available":[158],"open":[160],"source":[161],"packages":[162],"for":[163],"download":[164],"local":[166],"by":[168],"high-volume":[171],"needs":[172],"or":[173],"who":[174],"would":[175],"like":[176],"develop":[178],"custom":[179],"pipelines.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":104},{"year":2025,"cited_by_count":249},{"year":2024,"cited_by_count":393},{"year":2023,"cited_by_count":414},{"year":2022,"cited_by_count":439},{"year":2021,"cited_by_count":554},{"year":2020,"cited_by_count":601},{"year":2019,"cited_by_count":473},{"year":2018,"cited_by_count":455},{"year":2017,"cited_by_count":363},{"year":2016,"cited_by_count":304},{"year":2015,"cited_by_count":188},{"year":2014,"cited_by_count":82},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-16T13:24:37.021932","created_date":"2025-10-10T00:00:00"}