{"id":"https://openalex.org/W2097632784","doi":"https://doi.org/10.1093/nar/gkt1242","title":"SCOP2 prototype: a new approach to protein structure mining","display_name":"SCOP2 prototype: a new approach to protein structure mining","publication_year":2013,"publication_date":"2013-11-29","ids":{"openalex":"https://openalex.org/W2097632784","doi":"https://doi.org/10.1093/nar/gkt1242","mag":"2097632784","pmid":"https://pubmed.ncbi.nlm.nih.gov/24293656"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1242","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1242","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D310/3648598/gkt1242.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D310/3648598/gkt1242.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003886572","display_name":"Antonina Andreeva","orcid":"https://orcid.org/0000-0002-0450-0091"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Antonina Andreeva","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013967819","display_name":"Dave Howorth","orcid":null},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Dave Howorth","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105358652","display_name":"Cyrus Chothia","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Cyrus Chothia","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015292353","display_name":"Eugene Kulesha","orcid":"https://orcid.org/0000-0002-4285-6232"},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eugene Kulesha","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025834882","display_name":"Alexey G. Murzin","orcid":null},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexey G. Murzin","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145","https://openalex.org/I1303153112"]},{"raw_affiliation_string":"1MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK and 2European Bioinformatics Institute, Hinxton, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I170203145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003886572"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":11.9784,"has_fulltext":true,"cited_by_count":338,"citation_normalized_percentile":{"value":0.9912718,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D310","last_page":"D314"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7864937782287598},{"id":"https://openalex.org/keywords/structural-classification-of-proteins-database","display_name":"Structural Classification of Proteins database","score":0.6885005235671997},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6005812287330627},{"id":"https://openalex.org/keywords/successor-cardinal","display_name":"Successor cardinal","score":0.5838539004325867},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5098373293876648},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.438377320766449},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.423300176858902},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4220816493034363},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3380143940448761},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.30055510997772217},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2145785689353943},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10618466138839722},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09277600049972534}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7864937782287598},{"id":"https://openalex.org/C58773245","wikidata":"https://www.wikidata.org/wiki/Q4832556","display_name":"Structural Classification of Proteins database","level":3,"score":0.6885005235671997},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6005812287330627},{"id":"https://openalex.org/C75306776","wikidata":"https://www.wikidata.org/wiki/Q7632662","display_name":"Successor cardinal","level":2,"score":0.5838539004325867},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5098373293876648},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.438377320766449},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.423300176858902},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4220816493034363},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3380143940448761},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.30055510997772217},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2145785689353943},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10618466138839722},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09277600049972534},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkt1242","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1242","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D310/3648598/gkt1242.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24293656","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24293656","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.792.1011","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.792.1011","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/3f/21/gkt1242.PMC3964979.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2943115","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3964979","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1242","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1242","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D310/3648598/gkt1242.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4241994203","display_name":null,"funder_award_id":"BB/I024917/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097632784.pdf","grobid_xml":"https://content.openalex.org/works/W2097632784.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1642801664","https://openalex.org/W1842847600","https://openalex.org/W1972301670","https://openalex.org/W1981575795","https://openalex.org/W1989447327","https://openalex.org/W2005795025","https://openalex.org/W2013272124","https://openalex.org/W2018223171","https://openalex.org/W2022058405","https://openalex.org/W2022395419","https://openalex.org/W2034769609","https://openalex.org/W2045621589","https://openalex.org/W2061567285","https://openalex.org/W2074069606","https://openalex.org/W2074388759","https://openalex.org/W2085277871","https://openalex.org/W2088749908","https://openalex.org/W2099950967","https://openalex.org/W2108067237","https://openalex.org/W2113403117","https://openalex.org/W2116258825","https://openalex.org/W2128653811","https://openalex.org/W2130464038","https://openalex.org/W2131410522","https://openalex.org/W2141885858","https://openalex.org/W2151946481","https://openalex.org/W2152281406","https://openalex.org/W2155480785","https://openalex.org/W2168708922","https://openalex.org/W2177861138","https://openalex.org/W2283417531","https://openalex.org/W2404651812","https://openalex.org/W2786774014","https://openalex.org/W4256395558","https://openalex.org/W4320301318","https://openalex.org/W6713601601"],"related_works":["https://openalex.org/W2164753093","https://openalex.org/W2020085652","https://openalex.org/W2016685072","https://openalex.org/W4235583582","https://openalex.org/W2821108685","https://openalex.org/W1989756167","https://openalex.org/W2042084565","https://openalex.org/W2954364924","https://openalex.org/W2041862730","https://openalex.org/W2118652015"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,5,20,57,69,96,104,114],"prototype":[3],"of":[4,9,26,37,75,95,107,116,138],"new":[6,70,122,129,136],"structural":[7,48],"classification":[8,74,90,123],"proteins,":[10],"SCOP2":[11,18,38,52,89],"(http://scop2.mrc-lmb.cam.ac.uk/),":[12],"that":[13,77],"we":[14],"have":[15],"developed":[16],"recently.":[17],"is":[19,39,78,91,125],"successor":[21],"to":[22,32,40,46,55,72,127],"the":[23,34,73,132],"Structural":[24],"Classification":[25],"Proteins":[27],"(SCOP,":[28],"http://scop.mrc-lmb.cam.ac.uk/scop/)":[29],"database.":[30],"Similarly":[31],"SCOP,":[33,82],"main":[35],"focus":[36],"organize":[41],"structurally":[42],"characterized":[43],"proteins":[44,76],"according":[45],"their":[47],"and":[49,65,110,119,134],"evolutionary":[50],"relationships.":[51],"was":[53],"designed":[54],"provide":[56],"more":[58],"advanced":[59],"framework":[60],"for":[61],"protein":[62,117],"structure":[63,118],"annotation":[64],"classification.":[66],"It":[67],"defines":[68],"approach":[71],"essentially":[79],"different":[80],"from":[81],"but":[83],"retains":[84],"its":[85],"best":[86],"features.":[87],"The":[88,121],"described":[92],"in":[93,100,131],"terms":[94],"directed":[97],"acyclic":[98],"graph":[99],"which":[101],"nodes":[102],"form":[103],"complex":[105],"network":[106],"many-to-many":[108],"relationships":[109],"are":[111],"represented":[112],"by":[113],"region":[115],"sequence.":[120],"project":[124],"expected":[126],"ensure":[128],"advances":[130],"field":[133],"open":[135],"areas":[137],"research.":[139]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":30},{"year":2023,"cited_by_count":32},{"year":2022,"cited_by_count":43},{"year":2021,"cited_by_count":32},{"year":2020,"cited_by_count":28},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":33},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":34},{"year":2015,"cited_by_count":31},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
