{"id":"https://openalex.org/W1977278302","doi":"https://doi.org/10.1093/nar/gkt1210","title":"iPfam: a database of protein family and domain interactions found in the Protein Data Bank","display_name":"iPfam: a database of protein family and domain interactions found in the Protein Data Bank","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W1977278302","doi":"https://doi.org/10.1093/nar/gkt1210","mag":"1977278302","pmid":"https://pubmed.ncbi.nlm.nih.gov/24297255"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1210","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D364/3639307/gkt1210.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D364/3639307/gkt1210.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5104045098","display_name":"ROBERT FINN","orcid":"https://orcid.org/0000-0001-8626-2148"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert D. Finn","raw_affiliation_strings":["HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051981217","display_name":"Benjamin L. Miller","orcid":"https://orcid.org/0000-0001-9168-8047"},"institutions":[{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin L. Miller","raw_affiliation_strings":["HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and","1HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and 2European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and","institution_ids":["https://openalex.org/I195573530"]},{"raw_affiliation_string":"1HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and 2European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I195573530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084167899","display_name":"Jody Clements","orcid":"https://orcid.org/0000-0003-3932-8188"},"institutions":[{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jody Clements","raw_affiliation_strings":["HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and","1HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and 2European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and","institution_ids":["https://openalex.org/I195573530"]},{"raw_affiliation_string":"1HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and 2European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I195573530"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059430118","display_name":"Alex Bateman","orcid":"https://orcid.org/0000-0002-6982-4660"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"Alex Bateman","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","1HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and 2European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"1HHMI Janelia Farm Research Campus, 19700 Helix Drive, Ashburn VA 20147 USA and 2European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I195573530"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":8.6647,"has_fulltext":true,"cited_by_count":176,"citation_normalized_percentile":{"value":0.98559423,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D364","last_page":"D373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.7792691588401794},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6908823847770691},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.6709728240966797},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5715606212615967},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4819357395172119},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4591362774372101},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40005767345428467},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.32111895084381104},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.2679630517959595},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16468313336372375}],"concepts":[{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.7792691588401794},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6908823847770691},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.6709728240966797},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5715606212615967},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4819357395172119},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4591362774372101},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40005767345428467},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32111895084381104},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2679630517959595},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16468313336372375},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt1210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1210","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D364/3639307/gkt1210.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24297255","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24297255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2943235","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965099","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1210","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1210","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D364/3639307/gkt1210.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320314023","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/050589e39"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1977278302.pdf","grobid_xml":"https://content.openalex.org/works/W1977278302.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1486817521","https://openalex.org/W1505550847","https://openalex.org/W1587822751","https://openalex.org/W1966041739","https://openalex.org/W1969465720","https://openalex.org/W1984406447","https://openalex.org/W1988739180","https://openalex.org/W1991637889","https://openalex.org/W1994573674","https://openalex.org/W1994803330","https://openalex.org/W1994822415","https://openalex.org/W2016088798","https://openalex.org/W2016954850","https://openalex.org/W2018756605","https://openalex.org/W2024138709","https://openalex.org/W2035503835","https://openalex.org/W2040941311","https://openalex.org/W2044856925","https://openalex.org/W2058017150","https://openalex.org/W2058933664","https://openalex.org/W2066666235","https://openalex.org/W2067865468","https://openalex.org/W2073478593","https://openalex.org/W2085064248","https://openalex.org/W2085963663","https://openalex.org/W2087494997","https://openalex.org/W2098416804","https://openalex.org/W2098927868","https://openalex.org/W2101181377","https://openalex.org/W2101330776","https://openalex.org/W2104791774","https://openalex.org/W2109248504","https://openalex.org/W2114478923","https://openalex.org/W2122884883","https://openalex.org/W2124973646","https://openalex.org/W2130675570","https://openalex.org/W2135621733","https://openalex.org/W2139070508","https://openalex.org/W2139074914","https://openalex.org/W2140611297","https://openalex.org/W2140798893","https://openalex.org/W2141885858","https://openalex.org/W2143392414","https://openalex.org/W2146316069","https://openalex.org/W2146928870","https://openalex.org/W2152281406","https://openalex.org/W2152299045","https://openalex.org/W2152444476","https://openalex.org/W2159465936","https://openalex.org/W2168708922","https://openalex.org/W2170463736","https://openalex.org/W4210323379","https://openalex.org/W4236268324","https://openalex.org/W4320301318","https://openalex.org/W4385126812","https://openalex.org/W6630364692"],"related_works":["https://openalex.org/W27170867","https://openalex.org/W2169315304","https://openalex.org/W2499073244","https://openalex.org/W2045131140","https://openalex.org/W2010825547","https://openalex.org/W3197405877","https://openalex.org/W2118652015","https://openalex.org/W2107811186","https://openalex.org/W2145427519","https://openalex.org/W1977278302"],"abstract_inverted_index":{"The":[0,119],"database":[1,41],"iPfam,":[2],"available":[3],"at":[4,26],"http://ipfam.org,":[5],"catalogues":[6],"Pfam":[7,40],"domain":[8,87],"interactions":[9,71],"based":[10],"on":[11],"known":[12],"3D":[13],"structures":[14],"that":[15],"are":[16,94],"found":[17],"in":[18,127],"the":[19,27,31,39,67,101,136],"Protein":[20],"Data":[21],"Bank,":[22],"providing":[23],"interaction":[24,34,84,137],"data":[25,35,60,85,126],"molecular":[28],"level.":[29],"Previously,":[30],"iPfam":[32,78,108],"domain-domain":[33,76,113],"was":[36],"integrated":[37],"within":[38],"and":[42,62,70,114],"website,":[43],"but":[44],"it":[45],"has":[46,79],"now":[47],"been":[48,80],"migrated":[49],"to":[50,75,82,124],"a":[51,128],"separate":[52],"database.":[53],"This":[54],"allows":[55],"for":[56,86],"independent":[57],"development,":[58],"improving":[59],"access":[61,123],"giving":[63],"clearer":[64],"separation":[65],"between":[66],"protein":[68],"family":[69],"datasets.":[72],"In":[73],"addition":[74],"interactions,":[77],"expanded":[81],"include":[83],"bound":[88],"small":[89],"molecule":[90],"ligands.":[91],"Functional":[92],"annotations":[93],"provided":[95],"from":[96],"source":[97],"databases,":[98],"supplemented":[99],"by":[100],"incorporation":[102],"of":[103,130,135],"Wikipedia":[104],"articles":[105],"where":[106],"available.":[107],"(version":[109],"1.0)":[110],"contains":[111],">9500":[112],"15":[115],"500":[116],"domain-ligand":[117],"interactions.":[118],"new":[120],"website":[121],"provides":[122],"this":[125],"variety":[129],"ways,":[131],"including":[132],"interactive":[133],"visualizations":[134],"data.":[138]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":15},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":13},{"year":2020,"cited_by_count":13},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":24},{"year":2016,"cited_by_count":25},{"year":2015,"cited_by_count":25},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
