{"id":"https://openalex.org/W2164379940","doi":"https://doi.org/10.1093/nar/gkt1202","title":"NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes","display_name":"NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes","publication_year":2013,"publication_date":"2013-11-22","ids":{"openalex":"https://openalex.org/W2164379940","doi":"https://doi.org/10.1093/nar/gkt1202","mag":"2164379940","pmid":"https://pubmed.ncbi.nlm.nih.gov/24271385"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1202","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1202","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D53/3629948/gkt1202.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D53/3629948/gkt1202.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091732710","display_name":"Stefanie Geisen","orcid":"https://orcid.org/0000-0003-3185-057X"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Stefanie Geisen","raw_affiliation_strings":["Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","institution_ids":[]},{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039320926","display_name":"Guillermo Barturen","orcid":"https://orcid.org/0000-0003-2103-1028"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo Barturen","raw_affiliation_strings":["Facultad de Ciencias, Departmento de Gene tica, Universidad de Granada, 18071-Granada, Spain and","Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gene tica, Universidad de Granada, 18071-Granada, Spain and","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022023349","display_name":"A. Marti \u0301\u2013Alganza","orcid":null},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00c1ngel M. Alganza","raw_affiliation_strings":["Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084745527","display_name":"Michael Hackenberg","orcid":"https://orcid.org/0000-0003-2248-3114"},"institutions":[{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Michael Hackenberg","raw_affiliation_strings":["Facultad de Ciencias, Departmento de Gene tica, Universidad de Granada, 18071-Granada, Spain and","Laboratorio de Bioinforma tica, Instituto de Biotecnolog a, Centro de Investigacio n Biome dica, 18100-Granada, Spain","Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gene tica, Universidad de Granada, 18071-Granada, Spain and","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Laboratorio de Bioinforma tica, Instituto de Biotecnolog a, Centro de Investigacio n Biome dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210113665"]},{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009966967","display_name":"Jos\u00e9 Luis Tejera Oliver","orcid":"https://orcid.org/0000-0003-0216-0393"},"institutions":[{"id":"https://openalex.org/I4210113665","display_name":"Instituto de Investigaci\u00f3n Biosanitaria de Granada","ror":"https://ror.org/026yy9j15","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210113665"]},{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jos\u00e9 L. Oliver","raw_affiliation_strings":["Facultad de Ciencias, Departmento de Gene tica, Universidad de Granada, 18071-Granada, Spain and","Laboratorio de Bioinforma tica, Instituto de Biotecnolog a, Centro de Investigacio n Biome dica, 18100-Granada, Spain","Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain"],"affiliations":[{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gene tica, Universidad de Granada, 18071-Granada, Spain and","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Laboratorio de Bioinforma tica, Instituto de Biotecnolog a, Centro de Investigacio n Biome dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I4210113665"]},{"raw_affiliation_string":"Facultad de Ciencias, Departmento de Gen\u00e9tica, Universidad de Granada, 18071-Granada, Spain and 2Laboratorio de Bioinform\u00e1tica, Instituto de Biotecnolog\u00eda, Centro de Investigaci\u00f3n Biom\u00e9dica, 18100-Granada, Spain","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5009966967"],"corresponding_institution_ids":["https://openalex.org/I173304897","https://openalex.org/I4210113665"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.3918,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.89146321,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"42","issue":"D1","first_page":"D53","last_page":"D59"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13157","display_name":"Cancer-related gene regulation","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.937198281288147},{"id":"https://openalex.org/keywords/cytosine","display_name":"Cytosine","score":0.5603654384613037},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5510650873184204},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4878823757171631},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4764428734779358},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4675053060054779},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.4114657938480377},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.29315564036369324},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.23158401250839233},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.10308048129081726}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.937198281288147},{"id":"https://openalex.org/C2776023528","wikidata":"https://www.wikidata.org/wiki/Q178425","display_name":"Cytosine","level":3,"score":0.5603654384613037},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5510650873184204},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4878823757171631},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4764428734779358},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4675053060054779},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.4114657938480377},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.29315564036369324},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23158401250839233},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.10308048129081726},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002460","descriptor_name":"Cell Line","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003596","descriptor_name":"Cytosine","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019175","descriptor_name":"DNA Methylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044127","descriptor_name":"Epigenesis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000592","qualifier_name":"standards","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkt1202","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1202","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D53/3629948/gkt1202.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24271385","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24271385","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/33365","is_oa":true,"landing_page_url":"http://hdl.handle.net/10481/33365","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2943082","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3964946","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1202","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1202","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D53/3629948/gkt1202.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323834","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2164379940.pdf","grobid_xml":"https://content.openalex.org/works/W2164379940.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W172094467","https://openalex.org/W1550463251","https://openalex.org/W1579447084","https://openalex.org/W1658127082","https://openalex.org/W1965207949","https://openalex.org/W1967841068","https://openalex.org/W1983307705","https://openalex.org/W1986639390","https://openalex.org/W1986849101","https://openalex.org/W2006905186","https://openalex.org/W2007349518","https://openalex.org/W2009954819","https://openalex.org/W2015780328","https://openalex.org/W2016461803","https://openalex.org/W2021459974","https://openalex.org/W2022386905","https://openalex.org/W2042160423","https://openalex.org/W2042397638","https://openalex.org/W2042545888","https://openalex.org/W2059099579","https://openalex.org/W2067236154","https://openalex.org/W2074746593","https://openalex.org/W2076628461","https://openalex.org/W2080636110","https://openalex.org/W2084118479","https://openalex.org/W2090080518","https://openalex.org/W2100555999","https://openalex.org/W2102573876","https://openalex.org/W2112593477","https://openalex.org/W2112810020","https://openalex.org/W2114912562","https://openalex.org/W2116646376","https://openalex.org/W2118258530","https://openalex.org/W2119224628","https://openalex.org/W2121016876","https://openalex.org/W2121417064","https://openalex.org/W2124985265","https://openalex.org/W2129424472","https://openalex.org/W2131374955","https://openalex.org/W2135594320","https://openalex.org/W2137915568","https://openalex.org/W2139031446","https://openalex.org/W2142257318","https://openalex.org/W2152426454","https://openalex.org/W2152642144","https://openalex.org/W2159065634","https://openalex.org/W2163327652","https://openalex.org/W2167155938","https://openalex.org/W6636882156"],"related_works":["https://openalex.org/W3169949620","https://openalex.org/W2092472359","https://openalex.org/W4366248456","https://openalex.org/W4252528527","https://openalex.org/W1977986259","https://openalex.org/W3138691642","https://openalex.org/W2094284586","https://openalex.org/W1970649873","https://openalex.org/W1653815836","https://openalex.org/W3216637790"],"abstract_inverted_index":{"The":[0],"updated":[1],"release":[2],"of":[3,26,57,70,119,164,192],"'NGSmethDB'":[4],"(http://bioinfo2.ugr.es/NGSmethDB)":[5],"is":[6,54,114],"a":[7,58,182,189],"repository":[8],"for":[9,14,125],"single-base":[10],"whole-genome":[11],"methylome":[12],"maps":[13],"the":[15,39,45,55,68,115,150,162],"best-assembled":[16],"eukaryotic":[17],"genomes.":[18],"Short-read":[19],"data":[20,64,147,158],"sets":[21],"from":[22],"NGS":[23],"bisulfite-sequencing":[24],"projects":[25],"cell":[27],"lines,":[28],"fresh":[29],"and":[30,36,43,103,131,140,143],"pathological":[31],"tissues":[32,169],"are":[33,49,175],"first":[34],"pre-processed":[35],"aligned":[37],"to":[38,62,81,101],"corresponding":[40],"reference":[41],"genome,":[42],"then":[44],"cytosine":[46],"methylation":[47,136,165],"levels":[48,166],"profiled.":[50],"One":[51],"major":[52],"improvement":[53,113],"application":[56],"unique":[59],"bioinformatics":[60],"protocol":[61],"all":[63,71,106],"sets,":[65],"thereby":[66],"assuring":[67],"comparability":[69],"values":[72],"with":[73,188],"each":[74],"other.":[75],"We":[76],"implemented":[77],"stringent":[78],"quality":[79],"controls":[80],"minimize":[82],"important":[83],"error":[84],"sources,":[85],"such":[86],"as":[87,178],"sequencing":[88],"errors,":[89],"bisulfite":[90],"failures,":[91],"clonal":[92],"reads":[93],"or":[94,170,198],"single":[95],"nucleotide":[96],"variants":[97],"(SNVs).":[98],"This":[99],"leads":[100],"reliable":[102],"high-quality":[104],"methylomes,":[105],"obtained":[107],"under":[108],"uniform":[109],"settings.":[110],"Another":[111],"significant":[112],"detection":[116],"in":[117,167,195],"parallel":[118],"SNVs,":[120],"which":[121,185],"might":[122],"be":[123],"crucial":[124],"many":[126],"downstream":[127],"analyses":[128],"(e.g.":[129],"SNVs":[130],"differential-methylation":[132],"relationships).":[133],"A":[134],"next-generation":[135],"browser":[137],"allows":[138,186],"fast":[139],"smooth":[141],"scrolling":[142],"zooming,":[144],"thus":[145],"speeding":[146],"download/upload,":[148],"at":[149],"same":[151],"time":[152],"requiring":[153],"fewer":[154],"server":[155],"resources.":[156],"Several":[157],"mining":[159],"tools":[160],"allow":[161],"comparison/retrieval":[163],"different":[168],"genome":[171],"regions.":[172],"NGSmethDB":[173],"methylomes":[174],"also":[176],"available":[177],"native":[179],"tracks":[180],"through":[181],"UCSC":[183],"hub,":[184],"comparison":[187],"wide":[190],"range":[191],"third-party":[193],"annotations,":[194],"particular":[196],"phenotype":[197],"disease":[199],"annotations.":[200]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
