{"id":"https://openalex.org/W2049050332","doi":"https://doi.org/10.1093/nar/gkt1199","title":"KBDOCK 2013: a spatial classification of 3D protein domain family interactions","display_name":"KBDOCK 2013: a spatial classification of 3D protein domain family interactions","publication_year":2013,"publication_date":"2013-11-23","ids":{"openalex":"https://openalex.org/W2049050332","doi":"https://doi.org/10.1093/nar/gkt1199","mag":"2049050332","pmid":"https://pubmed.ncbi.nlm.nih.gov/24271397"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1199","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkt1199","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086415034","display_name":"Anisah W. Ghoorah","orcid":"https://orcid.org/0000-0001-8273-6000"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I4210127166","display_name":"Centre Inria de l'Universit\u00e9 de Lorraine","ror":"https://ror.org/03fcjvn64","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210127166"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Anisah W. Ghoorah","raw_affiliation_strings":["Universit\u00e9 de Lorraine, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France, CNRS, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France and INRIA Nancy Grand Est, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France","Universit\u00e9 de Lorraine, Nancy, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lorraine, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France, CNRS, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France and INRIA Nancy Grand Est, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France","institution_ids":["https://openalex.org/I4210127166","https://openalex.org/I1294671590","https://openalex.org/I4210121838"]},{"raw_affiliation_string":"Universit\u00e9 de Lorraine, Nancy, France","institution_ids":["https://openalex.org/I90183372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015598896","display_name":"Marie\u2010Dominique Devignes","orcid":"https://orcid.org/0000-0002-0399-8713"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-Dominique Devignes","raw_affiliation_strings":["Universit\u00e9 de Lorraine, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France, 2CNRS, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France and 3INRIA Nancy Grand Est, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France","Universit\u00e9 de Lorraine, Nancy, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lorraine, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France, 2CNRS, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France and 3INRIA Nancy Grand Est, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France","institution_ids":["https://openalex.org/I90183372","https://openalex.org/I1326498283","https://openalex.org/I4210121838","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 de Lorraine, Nancy, France","institution_ids":["https://openalex.org/I90183372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065253427","display_name":"Malika Sma\u00efl\u2010Tabbone","orcid":"https://orcid.org/0000-0002-8119-2117"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210121838","display_name":"Laboratoire Lorrain de Recherche en Informatique et ses Applications","ror":"https://ror.org/02vnf0c38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I277688954","https://openalex.org/I4210107720","https://openalex.org/I4210121838","https://openalex.org/I4210159245","https://openalex.org/I90183372"]},{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Malika Sma\u00efl-Tabbone","raw_affiliation_strings":["Universit\u00e9 de Lorraine, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France, 2CNRS, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France and 3INRIA Nancy Grand Est, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France","Universit\u00e9 de Lorraine, Nancy, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lorraine, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France, 2CNRS, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France and 3INRIA Nancy Grand Est, LORIA, Campus Scientifique, BP 239, 54506 Villers-l\u00e8s-Nancy, France","institution_ids":["https://openalex.org/I90183372","https://openalex.org/I1326498283","https://openalex.org/I4210121838","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 de Lorraine, Nancy, France","institution_ids":["https://openalex.org/I90183372"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050082458","display_name":"David W. Ritchie","orcid":"https://orcid.org/0000-0002-0906-7354"},"institutions":[{"id":"https://openalex.org/I90183372","display_name":"Universit\u00e9 de Lorraine","ror":"https://ror.org/04vfs2w97","country_code":"FR","type":"education","lineage":["https://openalex.org/I90183372"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David W. Ritchie","raw_affiliation_strings":["Universit\u00e9 de Lorraine, Nancy, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Lorraine, Nancy, France","institution_ids":["https://openalex.org/I90183372"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5086415034"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210121838","https://openalex.org/I4210127166","https://openalex.org/I90183372"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4949,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.81835362,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"42","issue":"D1","first_page":"D389","last_page":"D395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9372950196266174},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5658555030822754},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4999253749847412},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.45275449752807617},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4255019426345825}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9372950196266174},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5658555030822754},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4999253749847412},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45275449752807617},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4255019426345825},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkt1199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1199","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24271397","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24271397","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:HAL:hal-00920612v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00920612","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://nar.oxfordjournals.org/content/early/2013/11/23/nar.gkt1199","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2943107","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3964971","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1199","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1199","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1548566593","https://openalex.org/W1965379872","https://openalex.org/W1967974891","https://openalex.org/W1975460133","https://openalex.org/W1985153601","https://openalex.org/W1988739180","https://openalex.org/W2000860171","https://openalex.org/W2008708467","https://openalex.org/W2021343666","https://openalex.org/W2027403155","https://openalex.org/W2029667189","https://openalex.org/W2059446387","https://openalex.org/W2062318714","https://openalex.org/W2065283382","https://openalex.org/W2067305633","https://openalex.org/W2087744067","https://openalex.org/W2098151554","https://openalex.org/W2102245393","https://openalex.org/W2105607553","https://openalex.org/W2106210646","https://openalex.org/W2109383908","https://openalex.org/W2110336366","https://openalex.org/W2122884883","https://openalex.org/W2123375001","https://openalex.org/W2123622386","https://openalex.org/W2124013748","https://openalex.org/W2125104371","https://openalex.org/W2130687290","https://openalex.org/W2131989561","https://openalex.org/W2136280642","https://openalex.org/W2138122982","https://openalex.org/W2141885858","https://openalex.org/W2146279689","https://openalex.org/W2146660498","https://openalex.org/W2152281406","https://openalex.org/W2152299045","https://openalex.org/W2152653671","https://openalex.org/W2156469184","https://openalex.org/W2159827975","https://openalex.org/W2168708922","https://openalex.org/W2195878577","https://openalex.org/W4210623056","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933","https://openalex.org/W2061542922"],"abstract_inverted_index":{"Comparing,":[0],"classifying":[1],"and":[2,37,68,92],"modelling":[3],"protein":[4,51,55],"structural":[5,103],"interactions":[6,41,78,94],"can":[7,44],"enrich":[8],"our":[9],"understanding":[10],"of":[11,64,73],"many":[12],"biomolecular":[13],"processes.":[14],"This":[15],"contribution":[16],"describes":[17],"Kbdock":[18,43,66,84],"(http://kbdock.loria.fr/),":[19],"a":[20,58,70,80],"database":[21],"system":[22],"that":[23],"combines":[24],"the":[25,33,119],"Pfam":[26,48,100],"domain":[27,49,61],"classification":[28],"with":[29],"coordinate":[30,82],"data":[31],"from":[32],"PDB":[34],"to":[35,89,118],"analyse":[36],"model":[38],"3D":[39,54],"domain-domain":[40],"(DDIs).":[42],"be":[45,87,107],"queried":[46],"using":[47],"identifiers,":[50],"sequences":[52],"or":[53,62,76,114],"structures.":[56],"For":[57],"given":[59],"query":[60,120],"pair":[63],"domains,":[65],"retrieves":[67],"displays":[69],"non-redundant":[71],"list":[72],"homologous":[74],"DDIs":[75],"domain-peptide":[77],"in":[79],"common":[81],"frame.":[83],"may":[85,106],"also":[86],"used":[88],"search":[90],"for":[91],"visualize":[93],"involving":[95],"different,":[96],"but":[97],"structurally":[98],"similar,":[99],"families.":[101],"Thus,":[102],"DDI":[104],"templates":[105],"proposed":[108],"even":[109],"when":[110],"there":[111],"is":[112],"little":[113],"no":[115],"sequence":[116],"similarity":[117],"domains.":[121]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3}],"updated_date":"2026-03-24T08:02:53.985720","created_date":"2025-10-10T00:00:00"}
