{"id":"https://openalex.org/W2127489230","doi":"https://doi.org/10.1093/nar/gkt1189","title":"ArchDB 2014: structural classification of loops in proteins","display_name":"ArchDB 2014: structural classification of loops in proteins","publication_year":2013,"publication_date":"2013-11-21","ids":{"openalex":"https://openalex.org/W2127489230","doi":"https://doi.org/10.1093/nar/gkt1189","mag":"2127489230","pmid":"https://pubmed.ncbi.nlm.nih.gov/24265221"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1189","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1189","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D315/16802150/gkt1189.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D315/16802150/gkt1189.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048998113","display_name":"Jaume Bonet","orcid":"https://orcid.org/0000-0001-5210-4387"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Jaume Bonet","raw_affiliation_strings":["Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","Pompeu Fabra University, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2801864671","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Pompeu Fabra University, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081228191","display_name":"Joan Planas-Iglesias","orcid":"https://orcid.org/0000-0002-6279-2483"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Joan Planas-Iglesias","raw_affiliation_strings":["Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","Pompeu Fabra University, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2801864671","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Pompeu Fabra University, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038679061","display_name":"Javier Garc\u0131\u0301a-Garc\u0131\u0301a","orcid":"https://orcid.org/0000-0001-9539-2606"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Javier Garcia-Garcia","raw_affiliation_strings":["Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","Pompeu Fabra University, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2801864671","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Pompeu Fabra University, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031156142","display_name":"Manuel Alejandro Mar\u00edn-L\u00f3pez","orcid":"https://orcid.org/0000-0003-0833-3574"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Manuel A. Mar\u00edn-L\u00f3pez","raw_affiliation_strings":["Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","Pompeu Fabra University, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2801864671","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Pompeu Fabra University, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090989775","display_name":"Narc\u00eds Fern\u00e1ndez\u2010Fuentes","orcid":"https://orcid.org/0000-0002-6421-1080"},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Narcis Fernandez-Fuentes","raw_affiliation_strings":["Institute of Biological, Environmental and Rural Sciences , Aberystwyth University , SY23 3DA Aberystwyth , Ceredigion , UK","Pompeu Fabra University, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biological, Environmental and Rural Sciences , Aberystwyth University , SY23 3DA Aberystwyth , Ceredigion , UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Pompeu Fabra University, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111840557","display_name":"Baldo Oliva","orcid":null},"institutions":[{"id":"https://openalex.org/I16038530","display_name":"Aberystwyth University","ror":"https://ror.org/015m2p889","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530"]},{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I4210146599","display_name":"Institute of Biological, Environmental and Rural Sciences","ror":"https://ror.org/051wgfj58","country_code":"GB","type":"education","lineage":["https://openalex.org/I16038530","https://openalex.org/I2799693246","https://openalex.org/I4210087105","https://openalex.org/I4210146599"]}],"countries":["ES","GB"],"is_corresponding":false,"raw_author_name":"Baldo Oliva","raw_affiliation_strings":["Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","Pompeu Fabra University, Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Lab (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), Barcelona, Catalonia, 08950, Spain and 2 Institute of Biological, Environmental and Rural Sciences, Aberystwyth University, SY23 3DA Aberystwyth, Ceredigion, UK","institution_ids":["https://openalex.org/I16038530","https://openalex.org/I2801864671","https://openalex.org/I4210146599"]},{"raw_affiliation_string":"Pompeu Fabra University, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.611,"has_fulltext":true,"cited_by_count":49,"citation_normalized_percentile":{"value":0.90320779,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"42","issue":"D1","first_page":"D315","last_page":"D319"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.9929999709129333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.9303612112998962},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5787978768348694},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.3638274669647217},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3401736617088318}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9303612112998962},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5787978768348694},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3638274669647217},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3401736617088318}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkt1189","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1189","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D315/16802150/gkt1189.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmh:oai:europepmc.org:2943096","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3964960","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmid:24265221","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24265221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/23221","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/23221","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:aber.ac.uk:publications/e83ee58f-6f89-4a40-ae3e-e4b63298018d","is_oa":false,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=84891774264&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306401660","display_name":"Aberystwyth Research portal (Aberystwyth University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16038530","host_organization_name":"Aberystwyth University","host_organization_lineage":["https://openalex.org/I16038530"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1189","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1189","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D315/16802150/gkt1189.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1831311507","display_name":null,"funder_award_id":"BIO2011-22568","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G2583680266","display_name":null,"funder_award_id":"FEDER BIO2011\u201022568","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G328603825","display_name":"Bioinformatics and genomic and phenomic platform development","funder_award_id":"BBS/E/W/10962A01D","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3827505808","display_name":null,"funder_award_id":"FI-DGR2012","funder_id":"https://openalex.org/F4320321505","funder_display_name":"Generalitat de Catalunya"},{"id":"https://openalex.org/G3945328416","display_name":null,"funder_award_id":"FEDER BIO2008\u20100205","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G845340322","display_name":null,"funder_award_id":"EUI2009\u201004018","funder_id":"https://openalex.org/F4320322930","funder_display_name":"Ministerio de Ciencia e Innovaci\u00f3n"},{"id":"https://openalex.org/G8892534858","display_name":null,"funder_award_id":"BBS/E/W/10962A01D","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320321505","display_name":"Generalitat de Catalunya","ror":"https://ror.org/01bg62x04"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127489230.pdf","grobid_xml":"https://content.openalex.org/works/W2127489230.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W1806630989","https://openalex.org/W1871470604","https://openalex.org/W1967686998","https://openalex.org/W1969425147","https://openalex.org/W1973695911","https://openalex.org/W1975449945","https://openalex.org/W1985744441","https://openalex.org/W2002850151","https://openalex.org/W2004234681","https://openalex.org/W2005240848","https://openalex.org/W2008708467","https://openalex.org/W2020960844","https://openalex.org/W2032643862","https://openalex.org/W2048947602","https://openalex.org/W2049870911","https://openalex.org/W2050085817","https://openalex.org/W2080022084","https://openalex.org/W2082535576","https://openalex.org/W2084367350","https://openalex.org/W2085144661","https://openalex.org/W2085162946","https://openalex.org/W2085697834","https://openalex.org/W2094203741","https://openalex.org/W2100981947","https://openalex.org/W2101333065","https://openalex.org/W2111973517","https://openalex.org/W2123742794","https://openalex.org/W2125725297","https://openalex.org/W2130479394","https://openalex.org/W2137052779","https://openalex.org/W2137760272","https://openalex.org/W2164479678","https://openalex.org/W2170747616","https://openalex.org/W2612166593"],"related_works":["https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W1971568933","https://openalex.org/W2013243191","https://openalex.org/W2117258802"],"abstract_inverted_index":{"The":[0,152,173],"function":[1,70,111],"of":[2,41,47,55,58,71,77,86,150,155,176],"a":[3,37,59,65,72,124,144,158,166],"protein":[4,73,78,87,99,102],"is":[5,12,89],"determined":[6],"by":[7,14],"its":[8],"three-dimensional":[9],"structure,":[10],"which":[11],"formed":[13],"regular":[15,29],"(i.e.":[16],"\u03b2-strands":[17],"and":[18,20,49,74,80,107,110,126,147,161,165,184],"\u03b1-helices)":[19],"non-periodic":[21],"structural":[22,30,84],"units":[23,35],"such":[24,123],"as":[25],"loops.":[26],"Compared":[27],"to":[28],"elements,":[31],"non-periodic,":[32],"non-repetitive":[33],"conformational":[34],"enclose":[36],"much":[38],"higher":[39],"degree":[40],"variability--raising":[42],"difficulties":[43],"in":[44,68,96,181],"the":[45,56,69,83,114,133,137],"identification":[46],"regularities,":[48],"yet":[50],"represent":[51],"an":[52,90,129],"important":[53,91,130],"part":[54],"structure":[57,100],"protein.":[60],"Indeed,":[61],"loops":[62,88,180],"often":[63],"play":[64],"pivotal":[66],"role":[67],"different":[75],"aspects":[76],"folding":[79],"dynamics.":[81],"Therefore,":[82],"classification":[85],"subject":[92],"with":[93],"clear":[94],"applications":[95],"homology":[97],"modelling,":[98],"prediction,":[101],"design":[103,106],"(e.g.":[104],"enzyme":[105],"catalytic":[108],"loops)":[109],"prediction.":[112],"ArchDB,":[113],"database":[115],"presented":[116],"here":[117],"(freely":[118],"available":[119],"at":[120],"http://sbi.imim.es/archdb),":[121],"represents":[122],"resource":[125],"has":[127],"been":[128],"asset":[131],"for":[132],"scientific":[134],"community":[135],"throughout":[136],"years.":[138],"In":[139],"this":[140],"article,":[141],"we":[142],"present":[143],"completely":[145],"reworked":[146],"updated":[148],"version":[149,154,175],"ArchDB.":[151],"new":[153],"ArchDB":[156,177],"features":[157],"novel,":[159],"fast":[160],"user-friendly":[162],"web-based":[163],"interface,":[164],"novel":[167],"graph-based,":[168],"computationally":[169],"efficient,":[170],"clustering":[171],"algorithm.":[172],"current":[174],"classifies":[178],"149,134":[179],"5739":[182],"classes":[183],"9608":[185],"subclasses.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":6}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
