{"id":"https://openalex.org/W2032426558","doi":"https://doi.org/10.1093/nar/gkt1127","title":"FireDB: a compendium of biological and pharmacologically relevant ligands","display_name":"FireDB: a compendium of biological and pharmacologically relevant ligands","publication_year":2013,"publication_date":"2013-11-15","ids":{"openalex":"https://openalex.org/W2032426558","doi":"https://doi.org/10.1093/nar/gkt1127","mag":"2032426558","pmid":"https://pubmed.ncbi.nlm.nih.gov/24243844"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1127","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D267/3590454/gkt1127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D267/3590454/gkt1127.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039483810","display_name":"Paolo Maietta","orcid":"https://orcid.org/0000-0002-9446-8063"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Paolo Maietta","raw_affiliation_strings":["Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063847276","display_name":"Gonzalo L\u00f3pez","orcid":"https://orcid.org/0000-0002-5092-1284"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Gonzalo Lopez","raw_affiliation_strings":["1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050850361","display_name":"\u00c1ngel Carro","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Angel Carro","raw_affiliation_strings":["1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001814149","display_name":"Benjamin J. Pingilley","orcid":null},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Benjamin J. Pingilley","raw_affiliation_strings":["1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034973024","display_name":"Leticia G. Le\u00f3n","orcid":"https://orcid.org/0000-0001-8781-7424"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Leticia G. Leon","raw_affiliation_strings":["1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015217651","display_name":"Alfonso Valencia","orcid":"https://orcid.org/0000-0002-8937-6789"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alfonso Valencia","raw_affiliation_strings":["1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":["https://openalex.org/I4210089594"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088945131","display_name":"Michael L. Tress","orcid":"https://orcid.org/0000-0001-9046-6370"},"institutions":[{"id":"https://openalex.org/I4210089594","display_name":"Spanish National Cancer Research Centre","ror":"https://ror.org/00bvhmc43","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210089594"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Michael L. Tress","raw_affiliation_strings":["1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)"],"affiliations":[{"raw_affiliation_string":"1Structural Biology and Biocomputing Programme, Spanish National Cancer Research Centre, Madrid, 28029, Spain and 2Spanish National Bioinformatics Institute (INB-ISCIII)","institution_ids":["https://openalex.org/I4210089594"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5039483810"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6151,"has_fulltext":false,"cited_by_count":29,"citation_normalized_percentile":{"value":0.89558041,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"42","issue":"D1","first_page":"D267","last_page":"D272"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/compendium","display_name":"Compendium","score":0.759577751159668},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5867148041725159},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5862841606140137},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.5705790519714355},{"id":"https://openalex.org/keywords/relevance","display_name":"Relevance (law)","score":0.49087291955947876},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.48795098066329956},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.46215111017227173},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.45434141159057617},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.42528191208839417},{"id":"https://openalex.org/keywords/biological-activity","display_name":"Biological activity","score":0.4246354103088379},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32603585720062256},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.28348976373672485},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.21052497625350952},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11957496404647827},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09342321753501892}],"concepts":[{"id":"https://openalex.org/C2778473407","wikidata":"https://www.wikidata.org/wiki/Q1459574","display_name":"Compendium","level":2,"score":0.759577751159668},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5867148041725159},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5862841606140137},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.5705790519714355},{"id":"https://openalex.org/C158154518","wikidata":"https://www.wikidata.org/wiki/Q7310970","display_name":"Relevance (law)","level":2,"score":0.49087291955947876},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.48795098066329956},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46215111017227173},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.45434141159057617},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.42528191208839417},{"id":"https://openalex.org/C116073593","wikidata":"https://www.wikidata.org/wiki/Q864491","display_name":"Biological activity","level":3,"score":0.4246354103088379},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32603585720062256},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.28348976373672485},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.21052497625350952},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11957496404647827},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09342321753501892},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020134","descriptor_name":"Catalytic Domain","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt1127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1127","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D267/3590454/gkt1127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24243844","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24243844","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2943210","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965074","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1127","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1127","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D267/3590454/gkt1127.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2032426558.pdf","grobid_xml":"https://content.openalex.org/works/W2032426558.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W83855287","https://openalex.org/W1533059251","https://openalex.org/W1601495365","https://openalex.org/W1910105166","https://openalex.org/W1964640688","https://openalex.org/W1976855067","https://openalex.org/W2000588380","https://openalex.org/W2018661561","https://openalex.org/W2056788931","https://openalex.org/W2088116820","https://openalex.org/W2090649877","https://openalex.org/W2096541451","https://openalex.org/W2096560421","https://openalex.org/W2104812418","https://openalex.org/W2109872885","https://openalex.org/W2115336138","https://openalex.org/W2125537622","https://openalex.org/W2126048802","https://openalex.org/W2127012419","https://openalex.org/W2128601422","https://openalex.org/W2132926880","https://openalex.org/W2137052779","https://openalex.org/W2137841449","https://openalex.org/W2140611297","https://openalex.org/W2156125289","https://openalex.org/W2158020463","https://openalex.org/W2158964183","https://openalex.org/W2169434145","https://openalex.org/W2171681733","https://openalex.org/W2400868534","https://openalex.org/W2605068739","https://openalex.org/W2945549837","https://openalex.org/W4212920271","https://openalex.org/W4232154957","https://openalex.org/W4237293127","https://openalex.org/W6603412123"],"related_works":["https://openalex.org/W2020669016","https://openalex.org/W2088162897","https://openalex.org/W2090630809","https://openalex.org/W4387804157","https://openalex.org/W2106612397","https://openalex.org/W2518314460","https://openalex.org/W2793317762","https://openalex.org/W2022209941","https://openalex.org/W4205671017","https://openalex.org/W2113091268"],"abstract_inverted_index":{"FireDB":[0,35,80,95,107,135,169],"(http://firedb.bioinfo.cnio.es)":[1],"is":[2,150,182],"a":[3,67,108],"curated":[4,47],"inventory":[5],"of":[6,34,45,57,70,102,124,133,143,157,167],"catalytic":[7],"and":[8,91,112,181],"biologically":[9,48],"relevant":[10,49,52],"small":[11,68,104],"ligand-binding":[12],"residues":[13],"culled":[14],"from":[15,86,152,164],"the":[16,20,27,32,71,76,79,84,114,121,130,140,153],"protein":[17,61],"structures":[18],"in":[19,36,60],"Protein":[21],"Data":[22],"Bank.":[23],"Here":[24],"we":[25],"present":[26],"important":[28],"new":[29],"additions":[30],"since":[31],"publication":[33],"2007.":[37],"The":[38,172],"database":[39,111,173],"now":[40,96],"contains":[41],"an":[42],"extensive":[43],"list":[44],"manually":[46],"compounds.":[50],"Biologically":[51],"compounds":[53],"are":[54,65,162],"informative":[55],"because":[56],"their":[58],"role":[59],"function,":[62],"but":[63],"they":[64],"only":[66],"fraction":[69],"entire":[72],"ligand":[73],"set.":[74],"For":[75],"remaining":[77],"ligands,":[78,105,134],"provides":[81,137],"cross-references":[82],"to":[83,120,129],"annotations":[85,123],"publicly":[87],"available":[88,183],"biological,":[89],"chemical":[90],"pharmacological":[92,122],"compound":[93],"databases.":[94],"has":[97],"external":[98],"references":[99],"for":[100,184],"95%":[101],"contacting":[103],"making":[106],"more":[109],"complete":[110],"providing":[113],"scientific":[115],"community":[116],"with":[117],"easy":[118],"access":[119],"PDB":[125],"ligands.":[126],"In":[127],"addition":[128],"manual":[131],"curation":[132],"also":[136],"insights":[138],"into":[139],"biological":[141,148],"relevance":[142,149],"individual":[144],"binding":[145,159,170],"sites.":[146],"Here,":[147],"calculated":[151],"multiple":[154],"sequence":[155],"alignments":[156],"related":[158],"sites":[160],"that":[161],"generated":[163],"all-against-all":[165],"comparison":[166],"each":[168],"site.":[171],"can":[174],"be":[175],"accessed":[176],"by":[177],"RESTful":[178],"web":[179],"services":[180],"download":[185],"via":[186],"MySQL.":[187]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":10},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
