{"id":"https://openalex.org/W2147428019","doi":"https://doi.org/10.1093/nar/gkt1108","title":"Progenetix: 12 years of oncogenomic data curation","display_name":"Progenetix: 12 years of oncogenomic data curation","publication_year":2013,"publication_date":"2013-11-12","ids":{"openalex":"https://openalex.org/W2147428019","doi":"https://doi.org/10.1093/nar/gkt1108","mag":"2147428019","pmid":"https://pubmed.ncbi.nlm.nih.gov/24225322"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1108","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1055/16950949/gkt1108.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1055/16950949/gkt1108.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090189228","display_name":"Haoyang Cai","orcid":"https://orcid.org/0000-0001-8552-8565"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Haoyang Cai","raw_affiliation_strings":["Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009061545","display_name":"Nitin Kumar","orcid":"https://orcid.org/0000-0001-7466-3171"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nitin Kumar","raw_affiliation_strings":["Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I202697423"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103854206","display_name":"Ni Ai","orcid":"https://orcid.org/0009-0007-7703-9164"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Ni Ai","raw_affiliation_strings":["Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I202697423"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058727688","display_name":"Saumya Gupta","orcid":"https://orcid.org/0000-0001-7703-918X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Saumya Gupta","raw_affiliation_strings":["Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I202697423"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074849575","display_name":"Prisni Rath","orcid":"https://orcid.org/0000-0002-6080-6079"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Prisni Rath","raw_affiliation_strings":["Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Life Sciences, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland, 2Swiss Institute of Bioinformatics, University of Z\u00fcrich, CH-8057 Z\u00fcrich, Switzerland and 3Swiss Institute of Bioinformatics, University of Lausanne, CH-1015 Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354","https://openalex.org/I202697423"]},{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023290722","display_name":"Michael Baudis","orcid":"https://orcid.org/0000-0002-9903-4248"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michael Baudis","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.6992,"has_fulltext":false,"cited_by_count":41,"citation_normalized_percentile":{"value":0.90424574,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"42","issue":"D1","first_page":"D1055","last_page":"D1062"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6897631287574768},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.6167147159576416},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5995377898216248},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.5636282563209534},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5546290278434753},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.49941229820251465},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4895123243331909},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.4855203628540039},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4751023054122925},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3570977449417114},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3383708596229553},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3358571529388428},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.293209969997406},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2151431143283844},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.15150493383407593}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6897631287574768},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.6167147159576416},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5995377898216248},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.5636282563209534},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5546290278434753},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.49941229820251465},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4895123243331909},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.4855203628540039},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4751023054122925},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3570977449417114},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3383708596229553},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3358571529388428},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.293209969997406},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2151431143283844},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.15150493383407593},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkt1108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1108","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1055/16950949/gkt1108.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24225322","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24225322","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:www.zora.uzh.ch:106876","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Cai, Haoyang; Kumar, Nitin; Ai, Ni; Gupta, Saumya; Rath, Prisni; Baudis, Michael  (2014). Progenetix: 12 years of oncogenomic data curation.  Nucleic Acids Research, 42(D1):D1055-D1062.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2943227","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965091","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"doi:10.5167/uzh-106876","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-106876","pdf_url":null,"source":{"id":"https://openalex.org/S7407051291","display_name":"Universit\u00e4t Z\u00fcrich, ZORA","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1108","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1108","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1055/16950949/gkt1108.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2147428019.pdf"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W1484187172","https://openalex.org/W1490563308","https://openalex.org/W1968046362","https://openalex.org/W1969665013","https://openalex.org/W1972928849","https://openalex.org/W1975407466","https://openalex.org/W1975940081","https://openalex.org/W1981571109","https://openalex.org/W1984065010","https://openalex.org/W1990347487","https://openalex.org/W2011047838","https://openalex.org/W2011912935","https://openalex.org/W2016371780","https://openalex.org/W2016440433","https://openalex.org/W2025183726","https://openalex.org/W2030664470","https://openalex.org/W2031107587","https://openalex.org/W2040792886","https://openalex.org/W2042802855","https://openalex.org/W2044540757","https://openalex.org/W2050489856","https://openalex.org/W2058769734","https://openalex.org/W2059300459","https://openalex.org/W2060084956","https://openalex.org/W2067396172","https://openalex.org/W2082080058","https://openalex.org/W2085682228","https://openalex.org/W2086719369","https://openalex.org/W2091925303","https://openalex.org/W2097361093","https://openalex.org/W2104224322","https://openalex.org/W2109948920","https://openalex.org/W2109991075","https://openalex.org/W2110227850","https://openalex.org/W2111964354","https://openalex.org/W2116089873","https://openalex.org/W2117692326","https://openalex.org/W2118258530","https://openalex.org/W2135488124","https://openalex.org/W2143362349","https://openalex.org/W2153056550","https://openalex.org/W2156643308","https://openalex.org/W2158804744","https://openalex.org/W2158922990","https://openalex.org/W2159656414","https://openalex.org/W2162401315","https://openalex.org/W2165409131","https://openalex.org/W2170828133","https://openalex.org/W2339359539","https://openalex.org/W2736870608"],"related_works":["https://openalex.org/W2701062589","https://openalex.org/W2168783124","https://openalex.org/W4308914582","https://openalex.org/W2126958666","https://openalex.org/W2068608913","https://openalex.org/W4388126069","https://openalex.org/W4243357985","https://openalex.org/W2105071916","https://openalex.org/W4229794866","https://openalex.org/W1759033142"],"abstract_inverted_index":{"DNA":[0],"copy":[1],"number":[2,87],"aberrations":[3],"(CNAs)":[4],"can":[5],"be":[6],"found":[7],"in":[8,31,79,85,161],"the":[9,19,28,33,45,54,69,86,108,115,126,138,159],"majority":[10],"of":[11,49,56,63,65,88,117,137,158,163],"cancer":[12,66,89,118,122],"genomes":[13],"and":[14,25,100,167],"are":[15],"crucial":[16],"for":[17,146],"understanding":[18],"potential":[20],"mechanisms":[21],"underlying":[22],"tumor":[23],"initiation":[24],"progression.":[26],"Since":[27],"first":[29],"release":[30],"2001,":[32],"Progenetix":[34],"project":[35],"(http://www.progenetix.org)":[36],"has":[37],"provided":[38],"a":[39,80],"reference":[40],"resource":[41],"dedicated":[42],"to":[43,61,120,134],"provide":[44],"most":[46],"comprehensive":[47],"collection":[48],"genome-wide":[50],"CNA":[51,110],"profiles.":[52],"Reflecting":[53],"application":[55],"comparative":[57],"genomic":[58],"hybridization":[59],"techniques":[60],"tens":[62],"thousands":[64],"genomes,":[67],"over":[68],"past":[70],"12":[71],"years":[72],"our":[73],"data":[74,97,143,148],"curation":[75],"efforts":[76],"have":[77,103],"resulted":[78],"more":[81],"than":[82],"60-fold":[83],"increase":[84],"samples":[90],"presented":[91],"through":[92],"Progenetix.":[93],"In":[94,106,124,150],"addition,":[95,125],"new":[96,127],"exploration":[98],"tools":[99],"visualization":[101],"options":[102,145],"been":[104],"added.":[105],"particular,":[107],"gene-specific":[109],"frequency":[111],"analysis":[112],"should":[113],"facilitate":[114],"assignment":[116],"genes":[119],"related":[121],"types.":[123],"user":[128,165],"file":[129],"processing":[130],"interface":[131,166],"allows":[132],"users":[133],"take":[135],"advantage":[136],"online":[139,168],"tools,":[140],"including":[141],"various":[142],"representation":[144],"proprietary":[147],"pre-publication.":[149],"this":[151],"update":[152],"article,":[153],"we":[154],"report":[155],"recent":[156],"improvements":[157],"database":[160],"terms":[162],"content,":[164],"tools.":[169]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":8}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
