{"id":"https://openalex.org/W4230770774","doi":"https://doi.org/10.1093/nar/gkt1103","title":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases","display_name":"The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases","publication_year":2013,"publication_date":"2013-11-12","ids":{"openalex":"https://openalex.org/W4230770774","doi":"https://doi.org/10.1093/nar/gkt1103","pmid":"https://pubmed.ncbi.nlm.nih.gov/24225315"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1103","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D459/3578456/gkt1103.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D459/3578456/gkt1103.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044919501","display_name":"Ron Caspi","orcid":"https://orcid.org/0000-0002-6113-3590"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ron Caspi","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":[]},{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049324718","display_name":"Tomer Altman","orcid":"https://orcid.org/0000-0002-6521-5454"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tomer Altman","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006710775","display_name":"Richard Billington","orcid":"https://orcid.org/0000-0001-7288-8916"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard Billington","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001039974","display_name":"Kate Dreher","orcid":"https://orcid.org/0000-0003-4652-4398"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kate Dreher","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024708970","display_name":"Hartmut Foerster","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hartmut Foerster","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110621263","display_name":"Carol A. Fulcher","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carol A. Fulcher","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037386702","display_name":"Timothy A. Holland","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy A. Holland","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011903148","display_name":"Ingrid M. Keseler","orcid":"https://orcid.org/0000-0003-1738-6117"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ingrid M. Keseler","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047592210","display_name":"Anamika Kothari","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anamika Kothari","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032455622","display_name":"Aya Kubo","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aya Kubo","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007704760","display_name":"Markus Krummenacker","orcid":"https://orcid.org/0000-0002-2546-3007"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Markus Krummenacker","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053894822","display_name":"Mario Latendresse","orcid":"https://orcid.org/0000-0002-6292-0158"},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mario Latendresse","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018498646","display_name":"Lukas A. Mueller","orcid":"https://orcid.org/0000-0001-8640-1750"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukas A. Mueller","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044230509","display_name":"Quang Ong","orcid":"https://orcid.org/0000-0003-3490-3892"},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quang Ong","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015212276","display_name":"Suzanne Paley","orcid":"https://orcid.org/0000-0001-5763-8935"},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suzanne Paley","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016728461","display_name":"Pallavi Subhraveti","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pallavi Subhraveti","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091668355","display_name":"Daniel Weaver","orcid":"https://orcid.org/0000-0002-2906-3019"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel S. Weaver","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017731946","display_name":"Deepika Weerasinghe","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deepika Weerasinghe","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044383472","display_name":"Peifen Zhang","orcid":"https://orcid.org/0000-0003-3004-9182"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peifen Zhang","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082071104","display_name":"Peter D. Karp","orcid":"https://orcid.org/0000-0002-5876-6418"},"institutions":[{"id":"https://openalex.org/I4210095419","display_name":"Department of Plant Biology","ror":"https://ror.org/00tdyb139","country_code":"US","type":"facility","lineage":["https://openalex.org/I196817621","https://openalex.org/I4210095419"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter D. Karp","raw_affiliation_strings":["SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SRI International, 333 Ravenswood, Menlo Park, CA 94025, USA, 2Carnegie Institution, Department of Plant Biology, 260 Panama Street, Stanford, CA 94305, USA and 3Boyce Thompson Institute for Plant Research, Tower Road, Ithaca, New York 14853 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210095419","https://openalex.org/I205783295"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":20,"corresponding_author_ids":["https://openalex.org/A5044919501"],"corresponding_institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I205783295","https://openalex.org/I4210095419"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":52.6496,"has_fulltext":false,"cited_by_count":1203,"citation_normalized_percentile":{"value":0.99945088,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D459","last_page":"D471"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10171","display_name":"Biofuel production and bioconversion","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.7322243452072144},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.690202534198761},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6512149572372437},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5714809894561768},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.5023853778839111},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.4916709065437317},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47275596857070923},{"id":"https://openalex.org/keywords/model-organism","display_name":"Model organism","score":0.4578198194503784},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.24866867065429688},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22115319967269897},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1762908697128296}],"concepts":[{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.7322243452072144},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.690202534198761},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6512149572372437},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5714809894561768},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.5023853778839111},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.4916709065437317},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47275596857070923},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.4578198194503784},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.24866867065429688},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22115319967269897},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1762908697128296}],"mesh":[{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004798","descriptor_name":"Enzymes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007700","descriptor_name":"Kinetics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011134","descriptor_name":"Polysaccharides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062126","descriptor_name":"Databases, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gkt1103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1103","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D459/3578456/gkt1103.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24225315","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24225315","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2943093","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3964957","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1904530","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1904530","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1103","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1103","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D459/3578456/gkt1103.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4230770774.pdf","grobid_xml":"https://content.openalex.org/works/W4230770774.grobid-xml"},"referenced_works_count":75,"referenced_works":["https://openalex.org/W1542285901","https://openalex.org/W1964189732","https://openalex.org/W1964572291","https://openalex.org/W1964785916","https://openalex.org/W1969675093","https://openalex.org/W1970593872","https://openalex.org/W1985146337","https://openalex.org/W1985762104","https://openalex.org/W1986733749","https://openalex.org/W1988202385","https://openalex.org/W1991649474","https://openalex.org/W1992552872","https://openalex.org/W2000400807","https://openalex.org/W2002544946","https://openalex.org/W2002615469","https://openalex.org/W2012390669","https://openalex.org/W2012651924","https://openalex.org/W2015986985","https://openalex.org/W2020812884","https://openalex.org/W2025130443","https://openalex.org/W2025207333","https://openalex.org/W2029007900","https://openalex.org/W2029470813","https://openalex.org/W2031893281","https://openalex.org/W2037877947","https://openalex.org/W2058160568","https://openalex.org/W2058501095","https://openalex.org/W2065774643","https://openalex.org/W2066005086","https://openalex.org/W2068189837","https://openalex.org/W2069909946","https://openalex.org/W2070267953","https://openalex.org/W2071067571","https://openalex.org/W2072656551","https://openalex.org/W2073141486","https://openalex.org/W2082909190","https://openalex.org/W2083578450","https://openalex.org/W2090351027","https://openalex.org/W2092602079","https://openalex.org/W2094936796","https://openalex.org/W2099272654","https://openalex.org/W2100318643","https://openalex.org/W2101924832","https://openalex.org/W2102060841","https://openalex.org/W2102813808","https://openalex.org/W2103017472","https://openalex.org/W2103725779","https://openalex.org/W2104415262","https://openalex.org/W2106197985","https://openalex.org/W2110679449","https://openalex.org/W2111591809","https://openalex.org/W2112165937","https://openalex.org/W2116351978","https://openalex.org/W2116932689","https://openalex.org/W2117995870","https://openalex.org/W2124450302","https://openalex.org/W2127163664","https://openalex.org/W2131589156","https://openalex.org/W2133587231","https://openalex.org/W2139898508","https://openalex.org/W2141144953","https://openalex.org/W2141635203","https://openalex.org/W2146237019","https://openalex.org/W2146479634","https://openalex.org/W2154579559","https://openalex.org/W2155201905","https://openalex.org/W2159808736","https://openalex.org/W2161484404","https://openalex.org/W2162291311","https://openalex.org/W2168465568","https://openalex.org/W2170249521","https://openalex.org/W2170940180","https://openalex.org/W2172196250","https://openalex.org/W4237293127","https://openalex.org/W4250297812"],"related_works":["https://openalex.org/W4223896405","https://openalex.org/W2059629050","https://openalex.org/W2258998699","https://openalex.org/W3013644380","https://openalex.org/W2074740504","https://openalex.org/W1996935079","https://openalex.org/W3210243923","https://openalex.org/W2145833061","https://openalex.org/W1998405066","https://openalex.org/W2029483977"],"abstract_inverted_index":{"The":[0,117],"MetaCyc":[1,21,38],"database":[2,10],"(MetaCyc.org)":[3],"is":[4,47,59],"a":[5,60,103,122,147,175],"comprehensive":[6],"and":[7,14,30,46,73,90,108,128,135],"freely":[8],"accessible":[9],"describing":[11],"metabolic":[12,28,53,75,84],"pathways":[13,22,29,41,54],"enzymes":[15],"from":[16,33,43,112],"all":[17],"domains":[18],"of":[19,52,62,77,124,130,150,160,165,178,188],"life.":[20],"are":[23,31],"experimentally":[24],"determined,":[25],"mostly":[26],"small-molecule":[27],"curated":[32,50],"the":[34,48,70,97,113,166,172,179,185,189,191],"primary":[35],"scientific":[36],"literature.":[37],"contains":[39],">2100":[40],"derived":[42],">37,000":[44],"publications,":[45],"largest":[49],"collection":[51,61],"currently":[55],"available.":[56],"BioCyc":[57,95,118],"(BioCyc.org)":[58],">3000":[63],"organism-specific":[64],"Pathway/Genome":[65],"Databases":[66],"(PGDBs),":[67],"each":[68],"containing":[69],"full":[71],"genome":[72],"predicted":[74,86],"network":[76],"one":[78],"organism,":[79],"including":[80,132],"metabolites,":[81],"enzymes,":[82],"reactions,":[83,146],"pathways,":[85,153],"operons,":[87],"transport":[88],"systems":[89],"pathway-hole":[91],"fillers.":[92],"Additions":[93],"to":[94,171,193],"over":[96],"past":[98],"2":[99],"years":[100],"include":[101,142],"YeastCyc,":[102],"PGDB":[104],"for":[105,126,137,184],"Saccharomyces":[106],"cerevisiae,":[107],"891":[109],"new":[110,148,176],"genomes":[111],"Human":[114],"Microbiome":[115],"Project.":[116],"Web":[119,167],"site":[120],"offers":[121],"variety":[123],"tools":[125,136],"querying":[127],"analysis":[129],"PGDBs,":[131],"Omics":[133,173],"Viewers":[134],"comparative":[138],"analysis.":[139],"New":[140],"developments":[141],"atom":[143],"mappings":[144],"in":[145],"representation":[149,177],"glycan":[151],"degradation":[152],"improved":[154],"compound":[155],"structure":[156],"display,":[157],"better":[158],"coverage":[159],"enzyme":[161],"kinetic":[162],"data,":[163],"enhancements":[164],"Groups":[168],"functionality,":[169],"improvements":[170],"viewers,":[174],"Enzyme":[180],"Commission":[181],"system":[182],"and,":[183],"desktop":[186],"version":[187],"software,":[190],"ability":[192],"save":[194],"display":[195],"states.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":27},{"year":2025,"cited_by_count":86},{"year":2024,"cited_by_count":83},{"year":2023,"cited_by_count":93},{"year":2022,"cited_by_count":107},{"year":2021,"cited_by_count":81},{"year":2020,"cited_by_count":74},{"year":2019,"cited_by_count":72},{"year":2018,"cited_by_count":81},{"year":2017,"cited_by_count":146},{"year":2016,"cited_by_count":155},{"year":2015,"cited_by_count":152},{"year":2014,"cited_by_count":43},{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-14T08:36:36.166977","created_date":"2025-10-10T00:00:00"}