{"id":"https://openalex.org/W1986708244","doi":"https://doi.org/10.1093/nar/gkt1099","title":"PATRIC, the bacterial bioinformatics database and analysis resource","display_name":"PATRIC, the bacterial bioinformatics database and analysis resource","publication_year":2013,"publication_date":"2013-11-12","ids":{"openalex":"https://openalex.org/W1986708244","doi":"https://doi.org/10.1093/nar/gkt1099","mag":"1986708244","pmid":"https://pubmed.ncbi.nlm.nih.gov/24225323"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1099","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D581/3576106/gkt1099.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D581/3576106/gkt1099.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021998590","display_name":"Alice R. Wattam","orcid":"https://orcid.org/0000-0001-6018-6490"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alice R. Wattam","raw_affiliation_strings":["Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60637, USA, Grado Department of Industrial & Systems Engineering, Virginia Tech, Blacksburg, VA 24060, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Computing, Environment, and Life Sciences, Argonne National Laboratory, Argonne, IL 60637, USA and Nestl\u00e9 Institute of Health Sciences SA, Campus EPFL, Quartier de L'innovation, Lausanne, Switzerland","University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"Virginia Bioinformatics Institute, Virginia Tech, Blacksburg, VA 24060, USA, Computation Institute, University of Chicago, Chicago, IL 60637, USA, Mathematics and Computer Science Division, Argonne National Laboratory, Argonne, IL 60637, USA, Grado Department of Industrial & Systems Engineering, Virginia Tech, Blacksburg, VA 24060, USA, Department of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD 21201, USA, Fellowship for Interpretation of Genomes, Burr Ridge, IL 60527, USA, Computing, Environment, and Life Sciences, Argonne National Laboratory, Argonne, IL 60637, USA and Nestl\u00e9 Institute of Health Sciences SA, Campus EPFL, Quartier de L'innovation, Lausanne, Switzerland","institution_ids":[]},{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005424873","display_name":"David Abraham","orcid":"https://orcid.org/0000-0003-3072-2541"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Abraham","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078461765","display_name":"Oral Dalay","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Oral Dalay","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111684840","display_name":"Terry Disz","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Terry L. Disz","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090212849","display_name":"Timothy Driscoll","orcid":"https://orcid.org/0000-0002-5119-0372"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy Driscoll","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008584137","display_name":"Joseph L. Gabbard","orcid":"https://orcid.org/0000-0002-7488-676X"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph L. Gabbard","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087358711","display_name":"Joseph J. Gillespie","orcid":"https://orcid.org/0000-0002-5447-7264"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph J. Gillespie","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031113965","display_name":"Roger Gough","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger Gough","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111526853","display_name":"Deborah Hix","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deborah Hix","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112441916","display_name":"Ronald W. Kenyon","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronald Kenyon","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003775830","display_name":"Dustin Machi","orcid":"https://orcid.org/0000-0002-9081-6526"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dustin Machi","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108387571","display_name":"Chunhong Mao","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunhong Mao","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086824485","display_name":"Eric K. Nordberg","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric K. Nordberg","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015210172","display_name":"Robert Olson","orcid":"https://orcid.org/0000-0001-9751-4734"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Olson","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085138988","display_name":"Ross Overbeek","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ross Overbeek","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066616906","display_name":"Gordon D. Pusch","orcid":"https://orcid.org/0000-0003-1471-0401"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gordon D. Pusch","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040025864","display_name":"Maulik Shukla","orcid":"https://orcid.org/0009-0002-3396-5725"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maulik Shukla","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078184398","display_name":"Julie Schulman","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie Schulman","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053682943","display_name":"Rick Stevens","orcid":"https://orcid.org/0000-0002-4268-4020"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rick L. Stevens","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108683784","display_name":"Daniel E. Sullivan","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel E. Sullivan","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036781580","display_name":"Veronika Vonstein","orcid":null},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Veronika Vonstein","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016058860","display_name":"Andrew Warren","orcid":"https://orcid.org/0000-0003-2660-0103"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Warren","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014588611","display_name":"Rebecca Will","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rebecca Will","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090700662","display_name":"Meredith Wilson","orcid":"https://orcid.org/0000-0003-2305-2033"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meredith J.C. Wilson","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111957079","display_name":"Hyun Seung Yoo","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hyun Seung Yoo","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023323865","display_name":"Chengdong Zhang","orcid":"https://orcid.org/0000-0002-1100-2584"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chengdong Zhang","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100456405","display_name":"Yan Zhang","orcid":"https://orcid.org/0000-0003-2833-9789"},"institutions":[{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]},{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Zhang","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058609337","display_name":"Bruno Sobral","orcid":"https://orcid.org/0000-0003-3908-577X"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]},{"id":"https://openalex.org/I6059380","display_name":"University of Baltimore","ror":"https://ror.org/024gw2733","country_code":"US","type":"education","lineage":["https://openalex.org/I6059380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bruno W. Sobral","raw_affiliation_strings":["University of Maryland, Baltimore, Baltimore, United States"],"affiliations":[{"raw_affiliation_string":"University of Maryland, Baltimore, Baltimore, United States","institution_ids":["https://openalex.org/I6059380","https://openalex.org/I126744593"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":28,"corresponding_author_ids":["https://openalex.org/A5021998590"],"corresponding_institution_ids":["https://openalex.org/I126744593","https://openalex.org/I6059380"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":38.034,"has_fulltext":false,"cited_by_count":1333,"citation_normalized_percentile":{"value":0.99892476,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D581","last_page":"D591"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6528913974761963},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5548706650733948},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5223461389541626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4950660765171051},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.48370128870010376},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.44826140999794006},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.42408937215805054},{"id":"https://openalex.org/keywords/data-type","display_name":"Data type","score":0.4143607020378113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3558444380760193},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3378206491470337},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3088207244873047},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.23589199781417847},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.215410053730011}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6528913974761963},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5548706650733948},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5223461389541626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4950660765171051},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.48370128870010376},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.44826140999794006},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.42408937215805054},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.4143607020378113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3558444380760193},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3378206491470337},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3088207244873047},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.23589199781417847},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.215410053730011},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001424","descriptor_name":"Bacterial Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015373","descriptor_name":"Bacterial Typing Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gkt1099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1099","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D581/3576106/gkt1099.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24225323","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24225323","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:doc.rero.ch:297860","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400148","display_name":"reroDoc Digital Library","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:2943231","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3965095","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:osti.gov:1625514","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1625514","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/88954","is_oa":true,"landing_page_url":"http://hdl.handle.net/10919/88954","pdf_url":null,"source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1099","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D581/3576106/gkt1099.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1986708244.pdf","grobid_xml":"https://content.openalex.org/works/W1986708244.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1963512442","https://openalex.org/W1970322147","https://openalex.org/W1975970608","https://openalex.org/W1998767819","https://openalex.org/W2003516452","https://openalex.org/W2004548026","https://openalex.org/W2008274231","https://openalex.org/W2016088798","https://openalex.org/W2036288429","https://openalex.org/W2037442572","https://openalex.org/W2042160423","https://openalex.org/W2059325738","https://openalex.org/W2063936708","https://openalex.org/W2065519188","https://openalex.org/W2072967720","https://openalex.org/W2082819416","https://openalex.org/W2094953050","https://openalex.org/W2096092072","https://openalex.org/W2096525273","https://openalex.org/W2106197985","https://openalex.org/W2116140151","https://openalex.org/W2117043113","https://openalex.org/W2118258530","https://openalex.org/W2120467164","https://openalex.org/W2123588980","https://openalex.org/W2125810455","https://openalex.org/W2130687290","https://openalex.org/W2133632576","https://openalex.org/W2141626941","https://openalex.org/W2141778814","https://openalex.org/W2143387738","https://openalex.org/W2152653671","https://openalex.org/W2153569313","https://openalex.org/W2157918066","https://openalex.org/W2158700061","https://openalex.org/W2164045406","https://openalex.org/W2165253681","https://openalex.org/W2168708922","https://openalex.org/W2786774014","https://openalex.org/W4230784961","https://openalex.org/W4242729757"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W4231704780","https://openalex.org/W2095118173","https://openalex.org/W2382021449","https://openalex.org/W2104269053","https://openalex.org/W2106424170","https://openalex.org/W2501188010","https://openalex.org/W4299935056","https://openalex.org/W2083794993"],"abstract_inverted_index":{"The":[0],"Pathosystems":[1],"Resource":[2,10],"Integration":[3],"Center":[4,11],"(PATRIC)":[5],"is":[6],"the":[7,20,85,178,194,201],"all-bacterial":[8],"Bioinformatics":[9],"(BRC)":[12],"(http://www.patricbrc.org).":[13],"A":[14],"joint":[15],"effort":[16],"by":[17],"two":[18],"of":[19,24,43,92,104,119,126,158],"original":[21],"National":[22],"Institute":[23],"Allergy":[25],"and":[26,39,55,59,68,109,128,138,141,148,175,180,183],"Infectious":[27],"Diseases-funded":[28],"BRCs,":[29],"PATRIC":[30,115,167,195],"provides":[31,116],"researchers":[32,122],"with":[33],"an":[34],"online":[35],"resource":[36],"that":[37],"stores":[38],"integrates":[40],"a":[41,117,129,156],"variety":[42,118],"data":[44,94,125,150,179],"types":[45,95],"[e.g.":[46],"genomics,":[47],"transcriptomics,":[48],"protein-protein":[49],"interactions":[50],"(PPIs),":[51],"three-dimensional":[52],"protein":[53],"structures":[54],"sequence":[56],"typing":[57],"data]":[58],"associated":[60],"metadata.":[61],"Datatypes":[62],"are":[63,80,96,107,186],"summarized":[64],"for":[65,99,121],"individual":[66,100],"genomes":[67,73],"across":[69],"taxonomic":[70],"levels.":[71],"All":[72,177],"in":[74,200],"PATRIC,":[75],"currently":[76],"more":[77],"than":[78],"10,000,":[79],"consistently":[81],"annotated":[82],"using":[83,88,155],"RAST,":[84],"Rapid":[86],"Annotations":[87],"Subsystems":[89],"Technology.":[90],"Summaries":[91],"different":[93,105],"also":[97,110,168],"provided":[98],"genes,":[101],"where":[102,132],"comparisons":[103],"annotations":[106],"available,":[108],"include":[111],"available":[112],"transcriptomic":[113,165],"data.":[114,145],"ways":[120],"to":[123,160,173,193],"find":[124],"interest":[127],"private":[130,144,147],"workspace":[131],"they":[133],"can":[134,151],"store":[135],"both":[136],"genomic":[137,163],"gene":[139],"associations,":[140],"their":[142],"own":[143],"Both":[146],"public":[149],"be":[152],"analyzed":[153],"together":[154],"suite":[157],"tools":[159,185],"perform":[161],"comparative":[162],"or":[164],"analysis.":[166],"includes":[169],"integrated":[170,181],"information":[171],"related":[172],"disease":[174],"PPIs.":[176],"analysis":[182],"visualization":[184],"freely":[187],"available.":[188],"This":[189],"manuscript":[190],"describes":[191],"updates":[192],"since":[196],"its":[197],"initial":[198],"report":[199],"2007":[202],"NAR":[203],"Database":[204],"Issue.":[205]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":32},{"year":2024,"cited_by_count":75},{"year":2023,"cited_by_count":93},{"year":2022,"cited_by_count":127},{"year":2021,"cited_by_count":143},{"year":2020,"cited_by_count":160},{"year":2019,"cited_by_count":151},{"year":2018,"cited_by_count":136},{"year":2017,"cited_by_count":149},{"year":2016,"cited_by_count":141},{"year":2015,"cited_by_count":77},{"year":2014,"cited_by_count":35},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}