{"id":"https://openalex.org/W2100234791","doi":"https://doi.org/10.1093/nar/gkt1000","title":"P-MITE: a database for plant miniature inverted-repeat transposable elements","display_name":"P-MITE: a database for plant miniature inverted-repeat transposable elements","publication_year":2013,"publication_date":"2013-10-29","ids":{"openalex":"https://openalex.org/W2100234791","doi":"https://doi.org/10.1093/nar/gkt1000","mag":"2100234791","pmid":"https://pubmed.ncbi.nlm.nih.gov/24174541"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkt1000","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1000","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1176/16949163/gkt1000.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1176/16949163/gkt1000.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021566784","display_name":"Jiongjiong Chen","orcid":"https://orcid.org/0000-0002-1690-8510"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiongjiong Chen","raw_affiliation_strings":["Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102899410","display_name":"Qun Hu","orcid":"https://orcid.org/0000-0002-2924-0943"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qun Hu","raw_affiliation_strings":["Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433771","display_name":"Yu Zhang","orcid":"https://orcid.org/0009-0004-6445-894X"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100432094","display_name":"Lu Chen","orcid":"https://orcid.org/0000-0002-5701-9306"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Lu","raw_affiliation_strings":["Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056534103","display_name":"Hanhui Kuang","orcid":"https://orcid.org/0000-0003-4870-0578"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanhui Kuang","raw_affiliation_strings":["Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Vegetable Crops, Key Laboratory of Horticulture Biology, Ministry of Education, College of Horticulture and Forestry Sciences, Huazhong Agricultural University, Wuhan, 430070, P. R. China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":12.9168,"has_fulltext":true,"cited_by_count":140,"citation_normalized_percentile":{"value":0.98612655,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"42","issue":"D1","first_page":"D1176","last_page":"D1181"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mite","display_name":"Mite","score":0.9313614368438721},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8758247494697571},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.7919797897338867},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7670431137084961},{"id":"https://openalex.org/keywords/inverted-repeat","display_name":"Inverted repeat","score":0.5290623903274536},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.48380035161972046},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.3251442313194275},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.27619650959968567}],"concepts":[{"id":"https://openalex.org/C2779711295","wikidata":"https://www.wikidata.org/wiki/Q2441993","display_name":"Mite","level":2,"score":0.9313614368438721},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8758247494697571},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.7919797897338867},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7670431137084961},{"id":"https://openalex.org/C51603236","wikidata":"https://www.wikidata.org/wiki/Q4852694","display_name":"Inverted repeat","level":4,"score":0.5290623903274536},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48380035161972046},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.3251442313194275},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.27619650959968567}],"mesh":[{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004251","descriptor_name":"DNA Transposable Elements","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D055029","descriptor_name":"Inverted Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1093/nar/gkt1000","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1000","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1176/16949163/gkt1000.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:24174541","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24174541","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2943094","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3964958","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gkt1000","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkt1000","pdf_url":"https://academic.oup.com/nar/article-pdf/42/D1/D1176/16949163/gkt1000.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3940534987","display_name":null,"funder_award_id":"30921002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324775","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100234791.pdf","grobid_xml":"https://content.openalex.org/works/W2100234791.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W1494075612","https://openalex.org/W1963624291","https://openalex.org/W1964570305","https://openalex.org/W1972137701","https://openalex.org/W1972171731","https://openalex.org/W1981068357","https://openalex.org/W1985557598","https://openalex.org/W1986312970","https://openalex.org/W1990188370","https://openalex.org/W1994145712","https://openalex.org/W1997405626","https://openalex.org/W2001671544","https://openalex.org/W2008138798","https://openalex.org/W2009791735","https://openalex.org/W2012331775","https://openalex.org/W2012986985","https://openalex.org/W2014704298","https://openalex.org/W2014994755","https://openalex.org/W2018483804","https://openalex.org/W2021795499","https://openalex.org/W2022685385","https://openalex.org/W2034018298","https://openalex.org/W2042289913","https://openalex.org/W2044231545","https://openalex.org/W2045071699","https://openalex.org/W2059864757","https://openalex.org/W2060531604","https://openalex.org/W2061918046","https://openalex.org/W2066431516","https://openalex.org/W2071347662","https://openalex.org/W2071501400","https://openalex.org/W2071649356","https://openalex.org/W2075436975","https://openalex.org/W2080693057","https://openalex.org/W2084273867","https://openalex.org/W2092779913","https://openalex.org/W2094334461","https://openalex.org/W2100278941","https://openalex.org/W2101021876","https://openalex.org/W2102843862","https://openalex.org/W2105499815","https://openalex.org/W2107915254","https://openalex.org/W2108139609","https://openalex.org/W2113257613","https://openalex.org/W2115427074","https://openalex.org/W2120381562","https://openalex.org/W2120807642","https://openalex.org/W2125346198","https://openalex.org/W2128605601","https://openalex.org/W2130001957","https://openalex.org/W2133002406","https://openalex.org/W2133459663","https://openalex.org/W2134783286","https://openalex.org/W2139874678","https://openalex.org/W2141550398","https://openalex.org/W2149335334","https://openalex.org/W2153488363","https://openalex.org/W2154701173","https://openalex.org/W2155360453","https://openalex.org/W2156406578","https://openalex.org/W2159549123","https://openalex.org/W2167034214","https://openalex.org/W2169957005","https://openalex.org/W2171331964","https://openalex.org/W2175948239"],"related_works":["https://openalex.org/W2053969879","https://openalex.org/W2082641564","https://openalex.org/W2001246832","https://openalex.org/W2107333779","https://openalex.org/W2790772971","https://openalex.org/W2035548756","https://openalex.org/W3108190435","https://openalex.org/W1964419640","https://openalex.org/W2567353458","https://openalex.org/W1906262170"],"abstract_inverted_index":{"Miniature":[0],"inverted-repeat":[1],"transposable":[2],"elements":[3],"(MITEs)":[4],"are":[5,157],"prevalent":[6],"in":[7,52,110,122],"eukaryotic":[8],"species":[9],"including":[10],"plants.":[11],"MITE":[12,39,74,115,120,136,148,165],"families":[13,75],"vary":[14],"dramatically":[15],"and":[16,164,184,191,197],"usually":[17],"cannot":[18],"be":[19,168,178],"identified":[20,30,63],"based":[21],"on":[22,195],"homology.":[23],"In":[24,82],"this":[25],"study,":[26],"we":[27],"de":[28],"novo":[29],"MITEs":[31,49,62,88,107,194],"from":[32,65,72,78,150],"41":[33,79,152],"plant":[34,80,153],"species,":[35],"using":[36],"computer":[37],"programs":[38],"Digger,":[40],"MITE-Hunter":[41],"and/or":[42],"Repetitive":[43],"Sequence":[44],"with":[45,60,92,99,112,128],"Precise":[46],"Boundaries":[47],"(RSPB).":[48],"were":[50,76],"found":[51,109],"all,":[53],"but":[54],"one":[55],"(Cyanidioschyzon":[56],"merolae),":[57],"species.":[58,81],"Combined":[59],"the":[61,66,151,182],"previously":[64],"rice":[67],"genome,":[68],">2.3":[69],"million":[70],"sequences":[71,121,149,166],"3527":[73],"obtained":[77],"general,":[83],"higher":[84],"plants":[85],"contain":[86],"more":[87],"than":[89],"lower":[90],"plants,":[91],"a":[93,123],"few":[94],"exceptions":[95],"such":[96],"as":[97],"papaya,":[98],"only":[100],"538":[101],"elements.":[102],"The":[103,117,155,175],"largest":[104],"number":[105,118],"of":[106,119,133,186,193],"is":[108,125],"apple,":[111],"237":[113],"302":[114],"sequences.":[116],"genome":[124,129,198],"significantly":[126],"correlated":[127],"size.":[130],"A":[131],"series":[132],"databases":[134,156,176],"(plant":[135],"databases,":[137],"P-MITE),":[138],"available":[139,158],"online":[140],"at":[141],"http://pmite.hzau.edu.cn/django/mite/,":[142],"was":[143],"constructed":[144],"to":[145,180],"host":[146],"all":[147],"genomes.":[154],"for":[159],"sequence":[160],"similarity":[161],"searches":[162],"(BLASTN),":[163],"can":[167,177],"downloaded":[169],"by":[170,173],"family":[171],"or":[172],"genome.":[174],"used":[179],"study":[181],"origin":[183],"amplification":[185],"MITEs,":[187],"MITE-derived":[188],"small":[189],"RNAs":[190],"roles":[192],"gene":[196],"evolution.":[199]},"counts_by_year":[{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":16},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":9},{"year":2019,"cited_by_count":22},{"year":2018,"cited_by_count":13},{"year":2017,"cited_by_count":10},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":7}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
