{"id":"https://openalex.org/W2009511800","doi":"https://doi.org/10.1093/nar/gks835","title":"RhesusBase: a knowledgebase for the monkey research community","display_name":"RhesusBase: a knowledgebase for the monkey research community","publication_year":2012,"publication_date":"2012-09-08","ids":{"openalex":"https://openalex.org/W2009511800","doi":"https://doi.org/10.1093/nar/gks835","mag":"2009511800","pmid":"https://pubmed.ncbi.nlm.nih.gov/22965133"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks835","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks835","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D892/18789307/gks835.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/41/D1/D892/18789307/gks835.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059734052","display_name":"Shijian Zhang","orcid":"https://orcid.org/0000-0003-4474-4709"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shi-Jian Zhang","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing, China","Institute of Molecular Medicine Peking University  Beijing China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Institute of Molecular Medicine Peking University  Beijing China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057427825","display_name":"Chu\u2010Jun Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Chu-Jun Liu","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089923227","display_name":"Mingming Shi","orcid":"https://orcid.org/0000-0002-2165-2986"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingming Shi","raw_affiliation_strings":["Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024297841","display_name":"Lei Kong","orcid":"https://orcid.org/0000-0003-1162-2158"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Lei Kong","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, and","Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, and","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100380043","display_name":"Jiayu Chen","orcid":"https://orcid.org/0000-0001-9449-9321"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Jia-Yu Chen","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089379553","display_name":"Wei\u2010Zhen Zhou","orcid":"https://orcid.org/0009-0009-3475-1092"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei-Zhen Zhou","raw_affiliation_strings":["Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, and","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics, National Laboratory of Protein Engineering and Plant Genetic Engineering, College of Life Sciences, Peking University, Beijing, and","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086182259","display_name":"Xiaotong Zhu","orcid":"https://orcid.org/0000-0001-9870-3553"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Xiaotong Zhu","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004456961","display_name":"Peng Yu","orcid":"https://orcid.org/0000-0002-3948-3340"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Peng Yu","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100440616","display_name":"Jue Wang","orcid":"https://orcid.org/0000-0002-8979-6214"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Jue Wang","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015651558","display_name":"Xinzhuang Yang","orcid":"https://orcid.org/0000-0001-8345-9519"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Xinzhuang Yang","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101968311","display_name":"Ning Hou","orcid":"https://orcid.org/0000-0001-6707-7887"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ning Hou","raw_affiliation_strings":["Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069973858","display_name":"Zhiqiang Ye","orcid":"https://orcid.org/0000-0002-8822-6148"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Ye","raw_affiliation_strings":["Drug Discovery Center, Key Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School, Shenzhen, China","Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Drug Discovery Center, Key Laboratory of Chemical Genomics, Peking University Shenzhen Graduate School, Shenzhen, China","institution_ids":["https://openalex.org/I20231570"]},{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015494929","display_name":"Zhang Rongli","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Rongli Zhang","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042676208","display_name":"Rui\u2010Ping Xiao","orcid":"https://orcid.org/0000-0003-2448-409X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Ruiping Xiao","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045720115","display_name":"Xiuqin Zhang","orcid":"https://orcid.org/0000-0001-8692-7146"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Xiuqin Zhang","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042577846","display_name":"Chuan\u2010Yun Li","orcid":"https://orcid.org/0000-0002-8008-8430"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210146488","display_name":"Institute of Molecular Medicine","ror":"https://ror.org/04eb14s37","country_code":"IN","type":"facility","lineage":["https://openalex.org/I4210146488"]}],"countries":["CN","IN"],"is_corresponding":false,"raw_author_name":"Chuan-Yun Li","raw_affiliation_strings":["Institute of Molecular Medicine, Peking University, Beijing,","Peking University, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Medicine, Peking University, Beijing,","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210146488"]},{"raw_affiliation_string":"Peking University, Beijing, China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.4733,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.8068165,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"41","issue":"D1","first_page":"D892","last_page":"D905"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9699000120162964,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8604074120521545},{"id":"https://openalex.org/keywords/ensembl","display_name":"Ensembl","score":0.8330986499786377},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.8126809597015381},{"id":"https://openalex.org/keywords/macaque","display_name":"Macaque","score":0.6483937501907349},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.6207129955291748},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5267350673675537},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.522607147693634},{"id":"https://openalex.org/keywords/exon-skipping","display_name":"Exon skipping","score":0.5036854147911072},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5001273155212402},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4918213188648224},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.4788632094860077},{"id":"https://openalex.org/keywords/untranslated-region","display_name":"Untranslated region","score":0.466691792011261},{"id":"https://openalex.org/keywords/exon-trapping","display_name":"Exon trapping","score":0.4438546597957611},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.431906133890152},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.42067813873291016},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.40000319480895996},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2883784770965576},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.1722094714641571},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.08314323425292969}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8604074120521545},{"id":"https://openalex.org/C141674004","wikidata":"https://www.wikidata.org/wiki/Q1344256","display_name":"Ensembl","level":5,"score":0.8330986499786377},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.8126809597015381},{"id":"https://openalex.org/C2778950215","wikidata":"https://www.wikidata.org/wiki/Q177601","display_name":"Macaque","level":2,"score":0.6483937501907349},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.6207129955291748},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5267350673675537},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.522607147693634},{"id":"https://openalex.org/C2778776201","wikidata":"https://www.wikidata.org/wiki/Q3474283","display_name":"Exon skipping","level":5,"score":0.5036854147911072},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5001273155212402},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4918213188648224},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.4788632094860077},{"id":"https://openalex.org/C89604277","wikidata":"https://www.wikidata.org/wiki/Q424345","display_name":"Untranslated region","level":4,"score":0.466691792011261},{"id":"https://openalex.org/C39917842","wikidata":"https://www.wikidata.org/wiki/Q1384125","display_name":"Exon trapping","level":5,"score":0.4438546597957611},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.431906133890152},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.42067813873291016},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.40000319480895996},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2883784770965576},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.1722094714641571},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.08314323425292969},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008253","descriptor_name":"Macaca mulatta","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gks835","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks835","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D892/18789307/gks835.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22965133","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22965133","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.771.3459","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.771.3459","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/e0/ca/gks835.PMC3531163.pdf","raw_type":"text"},{"id":"pmh:oai:europepmc.org:2590265","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3531163","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1093/nar/gks835","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks835","pdf_url":"https://academic.oup.com/nar/article-pdf/41/D1/D892/18789307/gks835.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"},{"id":"https://openalex.org/F4320324787","display_name":"Peking University","ror":"https://ror.org/02v51f717"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2009511800.pdf","grobid_xml":"https://content.openalex.org/works/W2009511800.grobid-xml"},"referenced_works_count":80,"referenced_works":["https://openalex.org/W138570049","https://openalex.org/W1903350925","https://openalex.org/W1963979508","https://openalex.org/W1968050693","https://openalex.org/W1981509058","https://openalex.org/W1983275320","https://openalex.org/W1991949383","https://openalex.org/W1994167821","https://openalex.org/W1998767819","https://openalex.org/W1999895438","https://openalex.org/W2000941677","https://openalex.org/W2006896953","https://openalex.org/W2007824099","https://openalex.org/W2008944922","https://openalex.org/W2011073340","https://openalex.org/W2017199818","https://openalex.org/W2017426710","https://openalex.org/W2029506861","https://openalex.org/W2041509376","https://openalex.org/W2042160423","https://openalex.org/W2050869737","https://openalex.org/W2057545775","https://openalex.org/W2066053649","https://openalex.org/W2070510621","https://openalex.org/W2083381199","https://openalex.org/W2084748297","https://openalex.org/W2088440342","https://openalex.org/W2091583677","https://openalex.org/W2091851394","https://openalex.org/W2096359150","https://openalex.org/W2096525273","https://openalex.org/W2096766502","https://openalex.org/W2097065948","https://openalex.org/W2097337885","https://openalex.org/W2097493491","https://openalex.org/W2098738258","https://openalex.org/W2098832713","https://openalex.org/W2103017472","https://openalex.org/W2103441770","https://openalex.org/W2103592720","https://openalex.org/W2104371787","https://openalex.org/W2107580398","https://openalex.org/W2107644675","https://openalex.org/W2109108939","https://openalex.org/W2112132489","https://openalex.org/W2112814753","https://openalex.org/W2117446594","https://openalex.org/W2118961319","https://openalex.org/W2119412782","https://openalex.org/W2120456037","https://openalex.org/W2121604817","https://openalex.org/W2122732537","https://openalex.org/W2122863289","https://openalex.org/W2122884875","https://openalex.org/W2123784922","https://openalex.org/W2125548284","https://openalex.org/W2127640118","https://openalex.org/W2129137060","https://openalex.org/W2130538915","https://openalex.org/W2130687290","https://openalex.org/W2131397861","https://openalex.org/W2142586756","https://openalex.org/W2145191876","https://openalex.org/W2149429041","https://openalex.org/W2149517369","https://openalex.org/W2149671003","https://openalex.org/W2154916602","https://openalex.org/W2155331065","https://openalex.org/W2155684118","https://openalex.org/W2155804510","https://openalex.org/W2157854342","https://openalex.org/W2165253681","https://openalex.org/W2165352096","https://openalex.org/W2170496993","https://openalex.org/W2915108429","https://openalex.org/W4210347168","https://openalex.org/W4231170962","https://openalex.org/W4241391257","https://openalex.org/W4244606935","https://openalex.org/W4250052351"],"related_works":["https://openalex.org/W2464717012","https://openalex.org/W2235368041","https://openalex.org/W2146014453","https://openalex.org/W2042690128","https://openalex.org/W2965072475","https://openalex.org/W1981610827","https://openalex.org/W2165640100","https://openalex.org/W2070482595","https://openalex.org/W1502130869","https://openalex.org/W4230762195"],"abstract_inverted_index":{"Although":[0],"the":[1,9,40,64,80,101,105,116,144,191,199],"rhesus":[2],"macaque":[3,52,68,81],"is":[4,21],"a":[5,195],"unique":[6],"model":[7],"for":[8,39,128,198],"translational":[10],"study":[11],"of":[12,63,79,118,125,170],"human":[13],"diseases,":[14],"currently":[15],"its":[16,24],"use":[17],"in":[18,23,50,67,157],"biomedical":[19],"research":[20,42,201],"still":[22],"infant":[25],"stage":[26],"due":[27,87],"to":[28,88,185],"error-prone":[29],"gene":[30,103,152],"structures":[31],"and":[32,54,96,115,131,172,175,189],"limited":[33],"annotations.":[34],"Here,":[35],"we":[36],"present":[37],"RhesusBase":[38,192],"monkey":[41,200],"community":[43],"(http://www.rhesusbase.org).":[44],"We":[45,73,161],"performed":[46],"strand-specific":[47],"RNA-Seq":[48],"studies":[49],"10":[51],"tissues":[53],"generated":[55],"1.2":[56],"billion":[57],"90-bp":[58],"paired-end":[59],"reads,":[60],"covering":[61],">97.4%":[62],"putative":[65],"exon":[66],"transcripts":[69,82,107],"annotated":[70],"by":[71],"Ensembl.":[72],"found":[74],"that":[75],"at":[76],"least":[77],"28.7%":[78],"were":[83,154,183],"previously":[84,145],"mis-annotated,":[85],"mainly":[86],"incorrect":[89],"exon-intron":[90,126,137],"boundaries,":[91],"incomplete":[92],"untranslated":[93],"regions":[94],"(UTRs)":[95],"missed":[97],"exons.":[98],"Compared":[99],"with":[100],"previous":[102],"models,":[104],"revised":[106,151],"show":[108],"clearer":[109],"sequence":[110],"motifs":[111],"near":[112],"splicing":[113],"junctions":[114],"end":[117],"UTRs,":[119],"as":[120,122],"well":[121],"cleaner":[123],"patterns":[124],"distribution":[127],"expression":[129],"tags":[130],"cross-species":[132],"conservation":[133],"scores.":[134],"Strikingly,":[135],"1292":[136],"boundary":[138],"revisions":[139],"between":[140],"coding":[141],"exons":[142],"corrected":[143],"mis-annotated":[146],"open":[147],"reading":[148],"frames.":[149],"The":[150],"models":[153],"experimentally":[155],"verified":[156],"randomly":[158],"selected":[159],"cases.":[160],"further":[162],"integrated":[163],"functional":[164],"genomics":[165],"annotations":[166],"from":[167],">60":[168],"categories":[169],"public":[171],"in-house":[173],"resources":[174],"developed":[176,184],"an":[177],"online":[178],"accessible":[179],"database.":[180],"User-friendly":[181],"interfaces":[182],"update,":[186],"retrieve,":[187],"visualize":[188],"download":[190],"meta-data,":[193],"providing":[194],"'one-stop'":[196],"resource":[197],"community.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":7},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
