{"id":"https://openalex.org/W2060145604","doi":"https://doi.org/10.1093/nar/gks555","title":"BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles","display_name":"BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles","publication_year":2012,"publication_date":"2012-06-12","ids":{"openalex":"https://openalex.org/W2060145604","doi":"https://doi.org/10.1093/nar/gks555","mag":"2060145604","pmid":"https://pubmed.ncbi.nlm.nih.gov/22693216"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks555","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W257/4933472/gks555.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W257/4933472/gks555.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013884470","display_name":"Dominik Gront","orcid":"https://orcid.org/0000-0002-2260-2083"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":true,"raw_author_name":"D. Gront","raw_affiliation_strings":["University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland. dgront@chem.uw.edu.pl","University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland. dgront@chem.uw.edu.pl","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108916956","display_name":"Mieczys\u0142aw B\u0142aszczyk","orcid":null},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"M. Blaszczyk","raw_affiliation_strings":["University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland","University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103160416","display_name":"Piotr J. Wojciechowski","orcid":"https://orcid.org/0000-0002-9607-3532"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"P. Wojciechowski","raw_affiliation_strings":["University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland","University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025085688","display_name":"Andrzej Koli\u0144ski","orcid":"https://orcid.org/0000-0002-8830-2315"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"A. Kolinski","raw_affiliation_strings":["University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland","University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland"],"affiliations":[{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093 Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"University of Warsaw, Faculty of Chemistry, Pasteura 1, 02-093, Warsaw, Poland","institution_ids":["https://openalex.org/I4654613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5013884470"],"corresponding_institution_ids":["https://openalex.org/I4654613"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.6723,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.68607604,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"40","issue":"W1","first_page":"W257","last_page":"W262"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/threading","display_name":"Threading (protein sequence)","score":0.84993577003479},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8343542814254761},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.6457846760749817},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6097581386566162},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.5882896184921265},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.5445566177368164},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5248770117759705},{"id":"https://openalex.org/keywords/sequence-homology","display_name":"Sequence homology","score":0.521746039390564},{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.5061737895011902},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49932408332824707},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4964945912361145},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.45748013257980347},{"id":"https://openalex.org/keywords/homology-modeling","display_name":"Homology modeling","score":0.45732489228248596},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.41393887996673584},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3815872371196747},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3719772696495056},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.37097105383872986},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.34981513023376465},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.25306105613708496},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.13883879780769348},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.11380136013031006},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.0839780867099762},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0795714259147644}],"concepts":[{"id":"https://openalex.org/C200307862","wikidata":"https://www.wikidata.org/wiki/Q7797175","display_name":"Threading (protein sequence)","level":3,"score":0.84993577003479},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8343542814254761},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.6457846760749817},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6097581386566162},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.5882896184921265},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.5445566177368164},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5248770117759705},{"id":"https://openalex.org/C2779315201","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Sequence homology","level":4,"score":0.521746039390564},{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.5061737895011902},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49932408332824707},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4964945912361145},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.45748013257980347},{"id":"https://openalex.org/C169627665","wikidata":"https://www.wikidata.org/wiki/Q5767913","display_name":"Homology modeling","level":3,"score":0.45732489228248596},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.41393887996673584},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3815872371196747},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3719772696495056},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37097105383872986},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.34981513023376465},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.25306105613708496},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.13883879780769348},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.11380136013031006},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.0839780867099762},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0795714259147644},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D040681","descriptor_name":"Structural Homology, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gks555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks555","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W257/4933472/gks555.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22693216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22693216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2409726","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394251","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W257","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W257","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gks555","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks555","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W257/4933472/gks555.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4961122233","display_name":null,"funder_award_id":"TEAM/2011-7/6","funder_id":"https://openalex.org/F4320321042","funder_display_name":"Fundacja na rzecz Nauki Polskiej"},{"id":"https://openalex.org/G6660225447","display_name":null,"funder_award_id":"co-financed","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G8427492030","display_name":null,"funder_award_id":"TEAM/2011-7/6","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320321042","display_name":"Fundacja na rzecz Nauki Polskiej","ror":"https://ror.org/048zd9m77"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2060145604.pdf","grobid_xml":"https://content.openalex.org/works/W2060145604.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1590648220","https://openalex.org/W1969051510","https://openalex.org/W1978304263","https://openalex.org/W1992502768","https://openalex.org/W1994518388","https://openalex.org/W2003852785","https://openalex.org/W2003853681","https://openalex.org/W2004228538","https://openalex.org/W2008708467","https://openalex.org/W2011769393","https://openalex.org/W2012924461","https://openalex.org/W2014072682","https://openalex.org/W2040594319","https://openalex.org/W2044145005","https://openalex.org/W2046192291","https://openalex.org/W2050330741","https://openalex.org/W2082667898","https://openalex.org/W2085277871","https://openalex.org/W2100856169","https://openalex.org/W2101597967","https://openalex.org/W2102245393","https://openalex.org/W2102677343","https://openalex.org/W2118836759","https://openalex.org/W2133715954","https://openalex.org/W2135621733","https://openalex.org/W2141120048","https://openalex.org/W2153187042","https://openalex.org/W2157540858","https://openalex.org/W2158714788","https://openalex.org/W2164671969","https://openalex.org/W2172175286","https://openalex.org/W4256395558"],"related_works":["https://openalex.org/W2253761889","https://openalex.org/W2139373949","https://openalex.org/W1741740882","https://openalex.org/W2142895465","https://openalex.org/W24291664","https://openalex.org/W2380350064","https://openalex.org/W2246807311","https://openalex.org/W2345114863","https://openalex.org/W2005647400","https://openalex.org/W2014072682"],"abstract_inverted_index":{"The":[0,36,102],"BioShell":[1],"package":[2],"has":[3],"recently":[4],"been":[5],"extended":[6],"with":[7],"a":[8,54,60,64],"web":[9],"server":[10,37,105],"for":[11,53],"protein":[12],"homology":[13],"detection":[14],"based":[15],"on":[16],"profile-to-profile":[17],"alignment":[18],"(known":[19],"as":[20,97],"1D":[21],"threading).":[22],"Its":[23],"aim":[24],"is":[25,83,106],"to":[26,30,71,92],"assign":[27],"structural":[28],"templates":[29],"each":[31],"domain":[32],"of":[33,75],"the":[34,73,88,93,98],"query.":[35],"uses":[38],"sequence":[39,44,90],"profiles":[40,49],"that":[41,81,87],"describe":[42],"observed":[43],"variability":[45],"and":[46],"secondary":[47,56],"structure":[48,57],"providing":[50],"expected":[51],"probability":[52],"certain":[55],"type":[58],"at":[59],"given":[61],"position":[62],"in":[63],"protein.":[65],"Three":[66],"independent":[67],"predictors":[68],"are":[69],"used":[70],"increase":[72],"rate":[74],"successful":[76],"predictions.":[77],"Careful":[78],"evaluation":[79],"shows":[80],"there":[82],"nearly":[84],"80%":[85],"chance":[86],"query":[89],"belongs":[91],"same":[94],"SCOP":[95],"family":[96],"top":[99],"scoring":[100],"template.":[101],"Bioshell":[103],"Threader":[104],"freely":[107],"available":[108],"at:":[109],"http://www.bioshell.pl/threader/.":[110]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
