{"id":"https://openalex.org/W2097217326","doi":"https://doi.org/10.1093/nar/gks553","title":"BIPS: BIANA Interolog Prediction Server. A tool for protein\u2013protein interaction inference","display_name":"BIPS: BIANA Interolog Prediction Server. A tool for protein\u2013protein interaction inference","publication_year":2012,"publication_date":"2012-06-09","ids":{"openalex":"https://openalex.org/W2097217326","doi":"https://doi.org/10.1093/nar/gks553","mag":"2097217326","pmid":"https://pubmed.ncbi.nlm.nih.gov/22689642"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks553","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W147/18784611/gks553.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W147/18784611/gks553.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038679061","display_name":"Javier Garc\u0131\u0301a-Garc\u0131\u0301a","orcid":"https://orcid.org/0000-0001-9539-2606"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Javier Garcia-Garcia","raw_affiliation_strings":["Structural Bioinformatics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), 08003 Barcelona, Catalonia, Spain"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), 08003 Barcelona, Catalonia, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028915067","display_name":"Sylvia Schleker","orcid":null},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Sylvia Schleker","raw_affiliation_strings":["Forschungszentrum Ju lich, Institute of Complex Systems (ICS-5), 52425 Ju lich, Germany and","University of Pittsburgh, Pittsburgh, United States"],"affiliations":[{"raw_affiliation_string":"Forschungszentrum Ju lich, Institute of Complex Systems (ICS-5), 52425 Ju lich, Germany and","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, United States","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065265042","display_name":"Judith Klein\u2010Seetharaman","orcid":"https://orcid.org/0000-0002-4892-6828"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Judith Klein-Seetharaman","raw_affiliation_strings":["Department of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15260, USA","Forschungszentrum Ju lich, Institute of Complex Systems (ICS-5), 52425 Ju lich, Germany and","University of Pittsburgh, Pittsburgh, United States"],"affiliations":[{"raw_affiliation_string":"Department of Structural Biology, University of Pittsburgh, Pittsburgh, PA 15260, USA","institution_ids":["https://openalex.org/I170201317"]},{"raw_affiliation_string":"Forschungszentrum Ju lich, Institute of Complex Systems (ICS-5), 52425 Ju lich, Germany and","institution_ids":["https://openalex.org/I171892758"]},{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, United States","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111840557","display_name":"Baldo Oliva","orcid":null},"institutions":[{"id":"https://openalex.org/I2801864671","display_name":"Barcelona Biomedical Research Park","ror":"https://ror.org/05sajct49","country_code":"ES","type":"facility","lineage":["https://openalex.org/I2801864671"]},{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]},{"id":"https://openalex.org/I170486558","display_name":"Pompeu Fabra University","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Baldo Oliva","raw_affiliation_strings":["Structural Bioinformatics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), 08003 Barcelona, Catalonia, Spain,","University of Pittsburgh, Pittsburgh, United States"],"affiliations":[{"raw_affiliation_string":"Structural Bioinformatics Laboratory (GRIB-IMIM), Universitat Pompeu Fabra, Barcelona Research Park of Biomedicine (PRBB), 08003 Barcelona, Catalonia, Spain,","institution_ids":["https://openalex.org/I2801864671","https://openalex.org/I170486558"]},{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, United States","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5038679061"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":1.6136,"has_fulltext":true,"cited_by_count":71,"citation_normalized_percentile":{"value":0.83000486,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"40","issue":"W1","first_page":"W147","last_page":"W151"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7925893664360046},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.7015437483787537},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6709325909614563},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.6660005450248718},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5507456064224243},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5299692749977112},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5063289403915405},{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.4805101156234741},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.44097959995269775},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.41413554549217224},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3918762803077698},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35954993963241577},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.32273462414741516},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1690540611743927},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14686799049377441},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1021905243396759}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7925893664360046},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.7015437483787537},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6709325909614563},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.6660005450248718},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5507456064224243},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5299692749977112},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5063289403915405},{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.4805101156234741},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.44097959995269775},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.41413554549217224},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3918762803077698},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35954993963241577},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.32273462414741516},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1690540611743927},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14686799049377441},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1021905243396759},{"id":"https://openalex.org/C58226133","wikidata":"https://www.wikidata.org/wiki/Q1324199","display_name":"Pulmonary surfactant","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C55352822","wikidata":"https://www.wikidata.org/wiki/Q5558978","display_name":"Gibbs isotherm","level":3,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gks553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks553","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W147/18784611/gks553.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22689642","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22689642","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:repositori.upf.edu:10230/23202","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/23202","pdf_url":null,"source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2409791","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394316","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:juser.fz-juelich.de:23233","is_oa":true,"landing_page_url":"http://juser.fz-juelich.de/search?p=id:%22PreJuSER-23233%22","pdf_url":null,"source":{"id":"https://openalex.org/S4306401090","display_name":"JuSER (Forschungszentrum J\u00fclich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I171892758","host_organization_name":"Forschungszentrum J\u00fclich","host_organization_lineage":["https://openalex.org/I171892758"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nucleic Acids Research 40, W147 - W151 (2012). doi:10.1093/nar/gks553","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W147","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W147","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gks553","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks553","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W147/18784611/gks553.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G352791218","display_name":null,"funder_award_id":"(BMBF)","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097217326.pdf","grobid_xml":"https://content.openalex.org/works/W2097217326.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1508416409","https://openalex.org/W1839556211","https://openalex.org/W1965202162","https://openalex.org/W1974156712","https://openalex.org/W2000243542","https://openalex.org/W2000787234","https://openalex.org/W2003516452","https://openalex.org/W2038329947","https://openalex.org/W2042301222","https://openalex.org/W2055043387","https://openalex.org/W2059325738","https://openalex.org/W2060460012","https://openalex.org/W2064688622","https://openalex.org/W2095867585","https://openalex.org/W2097485877","https://openalex.org/W2097651291","https://openalex.org/W2097698606","https://openalex.org/W2101330776","https://openalex.org/W2101900454","https://openalex.org/W2103017472","https://openalex.org/W2114083522","https://openalex.org/W2116398954","https://openalex.org/W2122863289","https://openalex.org/W2122884883","https://openalex.org/W2123280311","https://openalex.org/W2124463526","https://openalex.org/W2125666635","https://openalex.org/W2126498993","https://openalex.org/W2128049108","https://openalex.org/W2130687290","https://openalex.org/W2133177319","https://openalex.org/W2134506547","https://openalex.org/W2135621733","https://openalex.org/W2136482324","https://openalex.org/W2147774652","https://openalex.org/W2150934340","https://openalex.org/W2151006472","https://openalex.org/W2163093482","https://openalex.org/W2164813401","https://openalex.org/W2915108429","https://openalex.org/W4210450218","https://openalex.org/W4233334497","https://openalex.org/W4255855797","https://openalex.org/W6677611723","https://openalex.org/W6681875201"],"related_works":["https://openalex.org/W1967123050","https://openalex.org/W1987705964","https://openalex.org/W2414873431","https://openalex.org/W2172097289","https://openalex.org/W4384303460","https://openalex.org/W1987363726","https://openalex.org/W2949751838","https://openalex.org/W2099913238","https://openalex.org/W82005175","https://openalex.org/W2097217326"],"abstract_inverted_index":{"Protein-protein":[0],"interactions":[1,54],"(PPIs)":[2],"play":[3],"a":[4,79,134],"crucial":[5],"role":[6],"in":[7],"biology,":[8],"and":[9,25,70,119,142,149],"high-throughput":[10],"experiments":[11],"have":[12,124],"greatly":[13],"increased":[14],"the":[15,39,52,56,66,93,96,101,112,115,122,153],"coverage":[16],"of":[17,22,41,55,59,95,114,121],"known":[18,53,128],"interactions.":[19,117],"Still,":[20],"identification":[21],"complete":[23],"inter-":[24],"intraspecies":[26],"interactomes":[27,132],"is":[28,139,164],"far":[29],"from":[30,92,130],"being":[31],"complete.":[32],"Experimental":[33],"data":[34],"can":[35,107],"be":[36,108],"complemented":[37],"by":[38],"prediction":[40],"PPIs":[42,129],"within":[43],"an":[44],"organism":[45],"or":[46],"between":[47,140,147,161],"two":[48],"organisms":[49,61],"based":[50,86],"on":[51,87,152],"orthologous":[57],"genes":[58],"other":[60],"(interologs).":[62],"Here,":[63],"we":[64],"present":[65],"BIANA":[67,98],"(Biologic":[68],"Interactions":[69],"Network":[71],"Analysis)":[72],"Interolog":[73],"Prediction":[74],"Server":[75],"(BIPS),":[76],"which":[77],"offers":[78],"web-based":[80],"interface":[81],"to":[82,99,110,158],"facilitate":[83],"PPI":[84],"predictions":[85],"interolog":[88],"information.":[89],"BIPS":[90,163],"benefits":[91],"capabilities":[94],"framework":[97],"integrate":[100],"several":[102],"PPI-related":[103],"databases.":[104],"Additional":[105],"metadata":[106],"used":[109,157],"improve":[111],"reliability":[113],"predicted":[116],"Sensitivity":[118],"specificity":[120,138],"server":[123],"been":[125],"calculated":[126],"using":[127,133],"different":[131],"leave-one-out":[135],"approach.":[136],"The":[137],"72":[141],"98%,":[143],"whereas":[144],"sensitivity":[145],"varies":[146],"1":[148],"59%,":[150],"depending":[151],"sequence":[154],"identity":[155],"cut-off":[156],"calculate":[159],"similarities":[160],"sequences.":[162],"freely":[165],"accessible":[166],"at":[167],"http://sbi.imim.es/BIPS.php.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":6}],"updated_date":"2026-04-13T07:58:08.660418","created_date":"2025-10-10T00:00:00"}
