{"id":"https://openalex.org/W2114274907","doi":"https://doi.org/10.1093/nar/gks541","title":"MoNetFamily: a web server to infer homologous modules and module\u2013module interaction networks in vertebrates","display_name":"MoNetFamily: a web server to infer homologous modules and module\u2013module interaction networks in vertebrates","publication_year":2012,"publication_date":"2012-06-09","ids":{"openalex":"https://openalex.org/W2114274907","doi":"https://doi.org/10.1093/nar/gks541","mag":"2114274907","pmid":"https://pubmed.ncbi.nlm.nih.gov/22689643"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks541","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks541","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gks541","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023781877","display_name":"Chun\u2010Yu Lin","orcid":"https://orcid.org/0000-0003-2901-2681"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Chun-Yu Lin","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology and Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology and Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102147407","display_name":"Yi-Wei Lin","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Wei Lin","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111905991","display_name":"Shang-Wen Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Shang-Wen Yu","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111648538","display_name":"Yu-Shu Lo","orcid":null},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Shu Lo","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088590993","display_name":"Jinn\u2010Moon Yang","orcid":"https://orcid.org/0000-0002-3205-4391"},"institutions":[{"id":"https://openalex.org/I148366613","display_name":"National Yang Ming Chiao Tung University","ror":"https://ror.org/00se2k293","country_code":"TW","type":"education","lineage":["https://openalex.org/I148366613"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Jinn-Moon Yang","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan"],"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology and 2Department of Biological Science and Technology, National Chiao Tung University, Hsinchu, 300, Taiwan","institution_ids":["https://openalex.org/I148366613"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5023781877"],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.6567,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.6851788,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"40","issue":"W1","first_page":"W263","last_page":"W270"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6702882051467896},{"id":"https://openalex.org/keywords/homologous-chromosome","display_name":"Homologous chromosome","score":0.5991564989089966},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5701707601547241},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.5303764343261719},{"id":"https://openalex.org/keywords/homo-sapiens","display_name":"Homo sapiens","score":0.5010857582092285},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5005059242248535},{"id":"https://openalex.org/keywords/protein-superfamily","display_name":"Protein superfamily","score":0.45976701378822327},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27531522512435913},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.2619743049144745},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.24029672145843506},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1937069594860077}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6702882051467896},{"id":"https://openalex.org/C64894306","wikidata":"https://www.wikidata.org/wiki/Q849622","display_name":"Homologous chromosome","level":3,"score":0.5991564989089966},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5701707601547241},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.5303764343261719},{"id":"https://openalex.org/C2777938546","wikidata":"https://www.wikidata.org/wiki/Q5","display_name":"Homo sapiens","level":2,"score":0.5010857582092285},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5005059242248535},{"id":"https://openalex.org/C178180057","wikidata":"https://www.wikidata.org/wiki/Q7251477","display_name":"Protein superfamily","level":3,"score":0.45976701378822327},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27531522512435913},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.2619743049144745},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.24029672145843506},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1937069594860077},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010980","descriptor_name":"Platelet Membrane Glycoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010980","descriptor_name":"Platelet Membrane Glycoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D010980","descriptor_name":"Platelet Membrane Glycoproteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011565","descriptor_name":"Psoriasis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D011565","descriptor_name":"Psoriasis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D011565","descriptor_name":"Psoriasis","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":false},{"descriptor_ui":"D011565","descriptor_name":"Psoriasis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011565","descriptor_name":"Psoriasis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011565","descriptor_name":"Psoriasis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D043562","descriptor_name":"Receptors, G-Protein-Coupled","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053614","descriptor_name":"Janus Kinase 2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053614","descriptor_name":"Janus Kinase 2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053614","descriptor_name":"Janus Kinase 2","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053634","descriptor_name":"TYK2 Kinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053634","descriptor_name":"TYK2 Kinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053634","descriptor_name":"TYK2 Kinase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D056892","descriptor_name":"Mediator Complex","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D056892","descriptor_name":"Mediator Complex","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D056892","descriptor_name":"Mediator Complex","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1093/nar/gks541","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks541","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22689643","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22689643","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:europepmc.org:2409796","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394321","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W263","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W263","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gks541","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks541","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6700000166893005}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1417342202","https://openalex.org/W1651053478","https://openalex.org/W1907686361","https://openalex.org/W1966487706","https://openalex.org/W1967837099","https://openalex.org/W1979107927","https://openalex.org/W1988263223","https://openalex.org/W1993429678","https://openalex.org/W2000243542","https://openalex.org/W2013318867","https://openalex.org/W2026353653","https://openalex.org/W2035817785","https://openalex.org/W2036894680","https://openalex.org/W2037442572","https://openalex.org/W2050937329","https://openalex.org/W2053564254","https://openalex.org/W2067163733","https://openalex.org/W2067389181","https://openalex.org/W2080090843","https://openalex.org/W2083201065","https://openalex.org/W2092006323","https://openalex.org/W2103017472","https://openalex.org/W2107249189","https://openalex.org/W2113613985","https://openalex.org/W2115806010","https://openalex.org/W2123060905","https://openalex.org/W2123501554","https://openalex.org/W2125725297","https://openalex.org/W2130479394","https://openalex.org/W2132582966","https://openalex.org/W2136850043","https://openalex.org/W2137917513","https://openalex.org/W2141885858","https://openalex.org/W2144724331","https://openalex.org/W2148043260","https://openalex.org/W2152877278","https://openalex.org/W2154894786","https://openalex.org/W2158274171","https://openalex.org/W2163480486","https://openalex.org/W2164813401","https://openalex.org/W2166574880","https://openalex.org/W2167190345","https://openalex.org/W2915108429","https://openalex.org/W2916767477","https://openalex.org/W2917375902","https://openalex.org/W4320301318","https://openalex.org/W6628446484"],"related_works":["https://openalex.org/W2585977452","https://openalex.org/W2405270086","https://openalex.org/W4296794131","https://openalex.org/W2021068722","https://openalex.org/W1858282483","https://openalex.org/W1579065292","https://openalex.org/W1997401537","https://openalex.org/W331962078","https://openalex.org/W217106733","https://openalex.org/W2049328731"],"abstract_inverted_index":{"A":[0],"module":[1,44,60,71,89,114,125,148,176,204],"is":[2,186,212],"a":[3,13],"fundamental":[4],"unit":[5],"forming":[6],"with":[7],"highly":[8],"connected":[9],"proteins":[10],"and":[11,20,31,46,76,100,106,121,132,143,165,172,178,196,206],"performs":[12],"certain":[14],"kind":[15],"of":[16,62,86,127,146],"biological":[17],"functions.":[18,32],"Modules":[19],"module-module":[21],"interaction":[22,93],"(MMI)":[23],"network":[24,161],"are":[25],"essential":[26],"for":[27,52,159,202],"understanding":[28],"cellular":[29,207],"processes":[30],"The":[33,209],"MoNetFamily":[34,80,116,136,210],"web":[35],"server":[36,57,155,185],"can":[37,156],"identify":[38],"the":[39,53,63,70,83,87,138,147,154,184],"modules,":[40],"homologous":[41,84,98,194],"modules":[42,85,99,120,164,195],"(called":[43],"family)":[45],"MMI":[47,107,160,197],"networks":[48,108,126,198],"across":[49,109,199],"multiple":[50,110,200],"species":[51,201],"query":[54,64,173],"protein(s).":[55],"This":[56],"first":[58],"finds":[59],"candidates":[61],"by":[65],"using":[66,91,175],"BLASTP":[67],"to":[68,97,188,192],"search":[69],"template":[72],"database":[73],"(1785":[74],"experimental":[75],"1252":[77],"structural":[78],"templates).":[79],"then":[81],"infers":[82],"selected":[88],"candidate":[90],"protein-protein":[92],"(PPI)":[94],"families.":[95],"According":[96],"PPIs,":[101],"we":[102],"statistically":[103],"calculated":[104],"MMIs":[105,123,167],"species.":[111],"For":[112],"each":[113],"candidate,":[115],"identifies":[117],"its":[118],"neighboring":[119,179],"their":[122],"in":[124,168],"Homo":[128],"sapiens,":[129],"Mus":[130],"musculus":[131],"Danio":[133],"rerio.":[134],"Finally,":[135],"shows":[137],"conserved":[139],"proteins,":[140],"PPI":[141],"profiles":[142],"functional":[144],"annotations":[145,174],"family.":[149],"Our":[150],"results":[151],"indicate":[152],"that":[153,183],"be":[157],"useful":[158],"(e.g.":[162],"1818":[163],"9678":[166],"H.":[169],"sapiens)":[170],"visualizations":[171],"families":[177],"modules.":[180],"We":[181],"believe":[182],"able":[187],"provide":[189],"valuable":[190],"insights":[191],"determine":[193],"studying":[203],"evolution":[205],"processes.":[208],"sever":[211],"available":[213],"at":[214],"http://monetfamily.life.nctu.edu.tw.":[215]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
