{"id":"https://openalex.org/W1995962575","doi":"https://doi.org/10.1093/nar/gks497","title":"METAGENassist: a comprehensive web server for comparative metagenomics","display_name":"METAGENassist: a comprehensive web server for comparative metagenomics","publication_year":2012,"publication_date":"2012-05-29","ids":{"openalex":"https://openalex.org/W1995962575","doi":"https://doi.org/10.1093/nar/gks497","mag":"1995962575","pmid":"https://pubmed.ncbi.nlm.nih.gov/22645318"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks497","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks497","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W88/4928343/gks497.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W88/4928343/gks497.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041046661","display_name":"D. Arndt","orcid":null},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"D. Arndt","raw_affiliation_strings":["Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada","Department of Computing Science, University of Alberta.Edmonton, Alberta, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science, University of Alberta, Edmonton, Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"Department of Computing Science, University of Alberta.Edmonton, Alberta, Canada","institution_ids":["https://openalex.org/I154425047"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073663029","display_name":"Jianguo Xia","orcid":"https://orcid.org/0000-0003-2040-2624"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J. Xia","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta, Edmonton,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta, Edmonton,","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017815011","display_name":"Youhua Liu","orcid":"https://orcid.org/0000-0002-4740-805X"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Y. Liu","raw_affiliation_strings":["Department of Computing Science,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science,","institution_ids":[]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073467023","display_name":"You Zhou","orcid":"https://orcid.org/0000-0002-7081-921X"},"institutions":[{"id":"https://openalex.org/I154425047","display_name":"University of Alberta","ror":"https://ror.org/0160cpw27","country_code":"CA","type":"education","lineage":["https://openalex.org/I154425047"]},{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Y. Zhou","raw_affiliation_strings":["Department of Biological Sciences, University of Alberta, Edmonton,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, University of Alberta, Edmonton,","institution_ids":["https://openalex.org/I154425047"]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113668291","display_name":"An Chi Guo","orcid":"https://orcid.org/0009-0003-7256-1317"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A. C. Guo","raw_affiliation_strings":["Department of Computing Science,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science,","institution_ids":[]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057901406","display_name":"J. A. Cruz","orcid":"https://orcid.org/0000-0002-4261-927X"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"J. A. Cruz","raw_affiliation_strings":["Department of Computing Science,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science,","institution_ids":[]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110237083","display_name":"I. Sinelnikov","orcid":null},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"I. Sinelnikov","raw_affiliation_strings":["Department of Computing Science,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing Science,","institution_ids":[]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073147928","display_name":"Karen Budwill","orcid":null},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]},{"id":"https://openalex.org/I4210098300","display_name":"Alberta Innovates","ror":"https://ror.org/00ynafe15","country_code":"CA","type":"government","lineage":["https://openalex.org/I4210098300"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"K. Budwill","raw_affiliation_strings":["Environment & Carbon Management Division, Alberta Innovates-Technology Futures, Edmonton, Alberta, Canada,","National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environment & Carbon Management Division, Alberta Innovates-Technology Futures, Edmonton, Alberta, Canada,","institution_ids":["https://openalex.org/I4210098300"]},{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080103957","display_name":"Camilla Nesb\u00f8","orcid":"https://orcid.org/0000-0001-5904-0750"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"C. L. Nesbo","raw_affiliation_strings":["National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003573061","display_name":"David S. Wishart","orcid":"https://orcid.org/0000-0002-3207-2434"},"institutions":[{"id":"https://openalex.org/I40752897","display_name":"National Institute for Nanotechnology","ror":"https://ror.org/05c0g2426","country_code":"CA","type":"facility","lineage":["https://openalex.org/I40752897","https://openalex.org/I4210159778"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"D. S. Wishart","raw_affiliation_strings":["National Institute for Nanotechnology, Edmonton, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute for Nanotechnology, Edmonton, Canada","institution_ids":["https://openalex.org/I40752897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":5.7783,"has_fulltext":true,"cited_by_count":414,"citation_normalized_percentile":{"value":0.97012393,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"40","issue":"W1","first_page":"W88","last_page":"W95"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9255483150482178},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6577200889587402},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6452186107635498},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.4228753447532654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.367121160030365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32100731134414673},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.19251027703285217},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09767293930053711}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9255483150482178},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6577200889587402},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6452186107635498},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.4228753447532654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.367121160030365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32100731134414673},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.19251027703285217},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09767293930053711},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1093/nar/gks497","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks497","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W88/4928343/gks497.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22645318","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22645318","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:cisti-icist.nrc-cnrc.ca:cistinparc:21269454","is_oa":false,"landing_page_url":"https://nrc-publications.canada.ca/eng/view/object/?id=1d2c18cb-7516-47f5-8240-efd2ba12b321","pdf_url":null,"source":{"id":"https://openalex.org/S7407055245","display_name":"NPARC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:escholarship.mcgill.ca:9s161c407","is_oa":false,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/9s161c407","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/40/W1/W88/1078994?login=true","raw_type":"Article"},{"id":"pmh:oai:escholarship.mcgill.ca:zs25xf543","is_oa":true,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/zs25xf543","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://doi.org/10.1093/nar/gks497","raw_type":"Article"},{"id":"pmh:oai:escholarship.mcgill.ca:zw12zb16x","is_oa":false,"landing_page_url":"https://escholarship.mcgill.ca/concern/articles/zw12zb16x","pdf_url":null,"source":{"id":"https://openalex.org/S4306401568","display_name":"eScholarship@McGill (McGill)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5023651","host_organization_name":"McGill University","host_organization_lineage":["https://openalex.org/I5023651"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://academic.oup.com/nar/article/40/W1/W88/1078994?login=true","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2409769","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394294","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W88","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W88","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gks497","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks497","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W88/4928343/gks497.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310787","display_name":"Genome Canada","ror":"https://ror.org/029s29983"},{"id":"https://openalex.org/F4320325651","display_name":"Alberta Innovates","ror":null},{"id":"https://openalex.org/F4320326646","display_name":"Genome Alberta","ror":null},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1995962575.pdf","grobid_xml":"https://content.openalex.org/works/W1995962575.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W273955616","https://openalex.org/W1811186957","https://openalex.org/W1964940342","https://openalex.org/W1977859620","https://openalex.org/W1982185581","https://openalex.org/W1989348205","https://openalex.org/W1995393174","https://openalex.org/W2008264573","https://openalex.org/W2021825126","https://openalex.org/W2032230795","https://openalex.org/W2072970694","https://openalex.org/W2096525273","https://openalex.org/W2108718991","https://openalex.org/W2109391327","https://openalex.org/W2118142823","https://openalex.org/W2118526609","https://openalex.org/W2130956021","https://openalex.org/W2143842034","https://openalex.org/W2149202898","https://openalex.org/W2153100136","https://openalex.org/W2159751674","https://openalex.org/W2167062509","https://openalex.org/W2911964244","https://openalex.org/W4231170962"],"related_works":["https://openalex.org/W2210738511","https://openalex.org/W2474302342","https://openalex.org/W1910109602","https://openalex.org/W4297131566","https://openalex.org/W2017364432","https://openalex.org/W2080583581","https://openalex.org/W3037682416","https://openalex.org/W3158976456","https://openalex.org/W4285082713","https://openalex.org/W2102118387"],"abstract_inverted_index":{"With":[0],"recent":[1],"improvements":[2],"in":[3,62,246],"DNA":[4],"sequencing":[5],"and":[6,12,28,169,194,206,227,237,243],"sample":[7],"extraction":[8],"techniques,":[9],"the":[10,45,141,177,247],"quantity":[11],"quality":[13,235],"of":[14,23,37,47,74,116,192,223,249],"metagenomic":[15,26,101,127],"data":[16,27,111,124,142,196,210],"are":[17,213],"now":[18],"growing":[19],"exponentially.":[20],"This":[21],"abundance":[22],"richly":[24],"annotated":[25],"bacterial":[29,48,109],"census":[30,110],"information":[31,153,225],"has":[32],"spawned":[33],"a":[34,71,93,113,190,216,221],"new":[35],"branch":[36],"microbiology":[38],"called":[39,103],"comparative":[40,66,84,100],"metagenomics.":[41],"Comparative":[42],"metagenomics":[43,85],"involves":[44],"comparison":[46],"populations":[49],"between":[50],"different":[51,54,58],"environmental":[52],"samples,":[53],"culture":[55],"conditions":[56,135],"or":[57,125,133],"microbial":[59],"hosts.":[60],"However,":[61],"order":[63],"to":[64,88],"do":[65],"metagenomics,":[67],"one":[68],"typically":[69],"requires":[70],"sophisticated":[72],"knowledge":[73],"multivariate":[75,193],"statistics":[76],"and/or":[77],"advanced":[78],"software":[79],"programming":[80],"skills.":[81],"To":[82,208],"make":[83],"more":[86],"accessible":[87],"microbiologists,":[89],"we":[90],"have":[91],"developed":[92],"freely":[94],"accessible,":[95],"easy-to-use":[96],"web":[97],"server":[98],"for":[99],"analysis":[102,218],"METAGENassist.":[104],"Users":[105],"can":[106,136,187,240],"upload":[107,143],"their":[108],"from":[112,176],"wide":[114],"variety":[115,191,222],"common":[117],"formats,":[118],"using":[119,220],"either":[120],"amplified":[121],"16S":[122],"rRNA":[123],"shotgun":[126],"data.":[128,180],"Metadata":[129],"concerning":[130],"environmental,":[131],"culture,":[132],"host":[134],"also":[137,146,231],"be":[138,241],"uploaded.":[139],"During":[140],"process,":[144],"METAGENassist":[145,230,252],"performs":[147],"an":[148],"automated":[149],"taxonomic-to-phenotypic":[150],"mapping.":[151],"Phenotypic":[152],"covering":[154],"nearly":[155],"20":[156],"functional":[157],"categories":[158],"such":[159],"as":[160],"GC":[161],"content,":[162],"genome":[163],"size,":[164],"oxygen":[165],"requirements,":[166],"energy":[167],"sources":[168],"preferred":[170],"temperature":[171],"range":[172],"is":[173,253],"automatically":[174],"generated":[175],"taxonomic":[178],"input":[179],"Using":[181],"this":[182],"phenotypically":[183],"enriched":[184],"data,":[185],"users":[186,212],"then":[188],"perform":[189],"univariate":[195],"analyses":[197],"including":[198],"fold":[199],"change":[200],"analysis,":[201],"t-tests,":[202],"PCA,":[203],"PLS-DA,":[204],"clustering":[205],"classification.":[207],"facilitate":[209],"processing,":[211],"guided":[214],"through":[215],"step-by-step":[217],"workflow":[219],"menus,":[224],"hyperlinks":[226],"check":[228],"boxes.":[229],"generates":[232],"colorful,":[233],"publication":[234],"tables":[236],"graphs":[238],"that":[239],"downloaded":[242],"used":[244],"directly":[245],"preparation":[248],"scientific":[250],"papers.":[251],"available":[254],"at":[255],"http://www.metagenassist.ca.":[256]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":21},{"year":2023,"cited_by_count":21},{"year":2022,"cited_by_count":34},{"year":2021,"cited_by_count":64},{"year":2020,"cited_by_count":55},{"year":2019,"cited_by_count":52},{"year":2018,"cited_by_count":45},{"year":2017,"cited_by_count":28},{"year":2016,"cited_by_count":30},{"year":2015,"cited_by_count":22},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":10},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
