{"id":"https://openalex.org/W1977358834","doi":"https://doi.org/10.1093/nar/gks485","title":"T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks","display_name":"T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks","publication_year":2012,"publication_date":"2012-06-06","ids":{"openalex":"https://openalex.org/W1977358834","doi":"https://doi.org/10.1093/nar/gks485","mag":"1977358834","pmid":"https://pubmed.ncbi.nlm.nih.gov/22675075"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks485","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks485","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W573/4924823/gks485.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W573/4924823/gks485.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080198406","display_name":"Alix Boc","orcid":null},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]},{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"A. Boc","raw_affiliation_strings":["D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7, Canada","1D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"1D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","institution_ids":["https://openalex.org/I159129438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113893699","display_name":"A Diallo","orcid":null},"institutions":[{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"A. B. Diallo","raw_affiliation_strings":["D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","1D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","institution_ids":["https://openalex.org/I159129438","https://openalex.org/I70931966"]},{"raw_affiliation_string":"1D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","institution_ids":["https://openalex.org/I159129438"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015574082","display_name":"V. Makarenkov","orcid":null},"institutions":[{"id":"https://openalex.org/I159129438","display_name":"Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al","ror":"https://ror.org/002rjbv21","country_code":"CA","type":"education","lineage":["https://openalex.org/I159129438","https://openalex.org/I49663120"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"V. Makarenkov","raw_affiliation_strings":["D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","1D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada"],"affiliations":[{"raw_affiliation_string":"D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","institution_ids":["https://openalex.org/I159129438","https://openalex.org/I70931966"]},{"raw_affiliation_string":"1D\u00e9partement de sciences biologiques, Universit\u00e9 de Montr\u00e9al, C.P. 6128, Succ. Centre-ville, Montr\u00e9al, QC, H3C 3J7 and 2D\u00e9partement d\u2019informatique, Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al, C.P. 8888, Succ. Centre-Ville, Montr\u00e9al, QC, H3C 3P8, Canada","institution_ids":["https://openalex.org/I159129438"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080198406"],"corresponding_institution_ids":["https://openalex.org/I159129438","https://openalex.org/I70931966"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":10.757,"has_fulltext":true,"cited_by_count":485,"citation_normalized_percentile":{"value":0.98984623,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"40","issue":"W1","first_page":"W573","last_page":"W579"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8987417221069336},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7952758073806763},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.625533938407898},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6124570369720459},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.6119090914726257},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5570973753929138},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5543545484542847},{"id":"https://openalex.org/keywords/horizontal-gene-transfer","display_name":"Horizontal gene transfer","score":0.4955500364303589},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4503239691257477},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4365329146385193},{"id":"https://openalex.org/keywords/supertree","display_name":"Supertree","score":0.42086711525917053},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33552563190460205},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2902257442474365},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2405443787574768},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2012118697166443},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.1898220181465149},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18950524926185608},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.08421790599822998},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.07670140266418457}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8987417221069336},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7952758073806763},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.625533938407898},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6124570369720459},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.6119090914726257},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5570973753929138},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5543545484542847},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.4955500364303589},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4503239691257477},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4365329146385193},{"id":"https://openalex.org/C55919133","wikidata":"https://www.wikidata.org/wiki/Q7644297","display_name":"Supertree","level":4,"score":0.42086711525917053},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33552563190460205},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2902257442474365},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2405443787574768},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2012118697166443},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.1898220181465149},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18950524926185608},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.08421790599822998},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.07670140266418457},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022761","descriptor_name":"Gene Transfer, Horizontal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gks485","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks485","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W573/4924823/gks485.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22675075","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22675075","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:www.archipel.uqam.ca:7927","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401005","display_name":"Archipelago (Universit\u00e9 du Qu\u00e9bec \u00e0 Montr\u00e9al)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093668","host_organization_name":"Quebec Intensive Silviculture Network","host_organization_lineage":["https://openalex.org/I4210093668"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article de revue scientifique"},{"id":"pmh:oai:europepmc.org:2409736","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394261","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W573","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W573","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gks485","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks485","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W573/4924823/gks485.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G4926246454","display_name":null,"funder_award_id":"249644","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5206474103","display_name":null,"funder_award_id":"249644-2011","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320321747","display_name":"Fonds Qu\u00e9b\u00e9cois de la Recherche sur la Nature et les Technologies","ror":"https://ror.org/00b9f9778"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1977358834.pdf","grobid_xml":"https://content.openalex.org/works/W1977358834.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W162044364","https://openalex.org/W1525734744","https://openalex.org/W1546639740","https://openalex.org/W1550721780","https://openalex.org/W1579352620","https://openalex.org/W1600438564","https://openalex.org/W1652298321","https://openalex.org/W1799812931","https://openalex.org/W1867732144","https://openalex.org/W1928030931","https://openalex.org/W1965070140","https://openalex.org/W1992584622","https://openalex.org/W1996835973","https://openalex.org/W2001076853","https://openalex.org/W2004798786","https://openalex.org/W2005471817","https://openalex.org/W2007492229","https://openalex.org/W2017519756","https://openalex.org/W2021440841","https://openalex.org/W2028360683","https://openalex.org/W2032279931","https://openalex.org/W2045391589","https://openalex.org/W2055298722","https://openalex.org/W2060425093","https://openalex.org/W2062018285","https://openalex.org/W2064794187","https://openalex.org/W2065461553","https://openalex.org/W2097706568","https://openalex.org/W2098558111","https://openalex.org/W2102424972","https://openalex.org/W2102502076","https://openalex.org/W2103546861","https://openalex.org/W2107387420","https://openalex.org/W2109320260","https://openalex.org/W2109580010","https://openalex.org/W2110105435","https://openalex.org/W2110141882","https://openalex.org/W2110263284","https://openalex.org/W2111211467","https://openalex.org/W2112400707","https://openalex.org/W2114854818","https://openalex.org/W2117205808","https://openalex.org/W2127166992","https://openalex.org/W2127847431","https://openalex.org/W2128565111","https://openalex.org/W2132926880","https://openalex.org/W2144898181","https://openalex.org/W2145608399","https://openalex.org/W2150003885","https://openalex.org/W2151043165","https://openalex.org/W2156752695","https://openalex.org/W2162443218","https://openalex.org/W2163627198","https://openalex.org/W2166016615","https://openalex.org/W2166092226","https://openalex.org/W2316574777","https://openalex.org/W3199943451","https://openalex.org/W4205911826","https://openalex.org/W4232087855"],"related_works":["https://openalex.org/W2160690190","https://openalex.org/W4253457646","https://openalex.org/W2086569686","https://openalex.org/W2058938859","https://openalex.org/W2146243941","https://openalex.org/W2126723504","https://openalex.org/W2963639031","https://openalex.org/W2769292036","https://openalex.org/W2332098909","https://openalex.org/W2156668042"],"abstract_inverted_index":{"T-REX":[0,28],"(Tree":[1],"and":[2,18,48,58,67,77,83,87,96,110,114],"reticulogram":[3],"REConstruction)":[4],"is":[5,128],"a":[6],"web":[7,126],"server":[8,127],"dedicated":[9],"to":[10,19],"the":[11,20,81,102],"reconstruction":[12],"of":[13,22,85,92],"phylogenetic":[14,45,63,112],"trees,":[15],"reticulation":[16],"networks":[17,115],"inference":[21,91],"horizontal":[23],"gene":[24,89],"transfer":[25],"(HGT)":[26],"events.":[27],"includes":[29],"several":[30],"popular":[31],"bioinformatics":[32],"applications":[33],"such":[34],"as":[35,71,73],"MUSCLE,":[36],"MAFFT,":[37],"Neighbor":[38],"Joining,":[39],"NINJA,":[40],"BioNJ,":[41],"PhyML,":[42],"RAxML,":[43],"random":[44],"tree":[46],"generator":[47],"some":[49],"well-known":[50],"sequence-to-distance":[51],"transformation":[52],"models.":[53],"It":[54],"also":[55],"comprises":[56],"fast":[57],"effective":[59],"methods":[60,106],"for":[61,74,108],"inferring":[62],"trees":[64,113],"from":[65,120],"complete":[66,86],"incomplete":[68],"distance":[69,121],"matrices":[70],"well":[72],"reconstructing":[75],"reticulograms":[76],"HGT":[78,94,98],"networks,":[79],"including":[80],"detection":[82],"validation":[84],"partial":[88],"transfers,":[90],"consensus":[93],"scenarios":[95],"interactive":[97],"identification,":[99],"developed":[100],"by":[101],"authors.":[103],"The":[104,125],"included":[105],"allows":[107],"validating":[109],"visualizing":[111],"which":[116],"can":[117],"be":[118],"built":[119],"or":[122],"sequence":[123],"data.":[124],"available":[129],"at:":[130],"www.trex.uqam.ca.":[131]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":19},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":39},{"year":2022,"cited_by_count":39},{"year":2021,"cited_by_count":42},{"year":2020,"cited_by_count":44},{"year":2019,"cited_by_count":44},{"year":2018,"cited_by_count":53},{"year":2017,"cited_by_count":51},{"year":2016,"cited_by_count":43},{"year":2015,"cited_by_count":34},{"year":2014,"cited_by_count":31},{"year":2013,"cited_by_count":15}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}