{"id":"https://openalex.org/W2127234799","doi":"https://doi.org/10.1093/nar/gks483","title":"Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets","display_name":"Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets","publication_year":2012,"publication_date":"2012-06-04","ids":{"openalex":"https://openalex.org/W2127234799","doi":"https://doi.org/10.1093/nar/gks483","mag":"2127234799","pmid":"https://pubmed.ncbi.nlm.nih.gov/22669907"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks483","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W510/18784094/gks483.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W510/18784094/gks483.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046629951","display_name":"Federico Zambelli","orcid":"https://orcid.org/0000-0003-3487-4331"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Federico Zambelli","raw_affiliation_strings":["Dipartimento di Scienze Biomolecolari e Biotecnologie, Universit\u00e0 di Milano, Italy","University of Milan, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, Universit\u00e0 di Milano, Italy","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041299553","display_name":"Gian Marco Prazzoli","orcid":null},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Gian Marco Prazzoli","raw_affiliation_strings":["Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita `di Milano, Italy,","University of Milan, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita `di Milano, Italy,","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005312066","display_name":"Graziano Pesole","orcid":"https://orcid.org/0000-0003-3663-0859"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]},{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]},{"id":"https://openalex.org/I4210148743","display_name":"Institute of Biomembranes, Bioenergetics and Molecular Biotechnologies","ror":"https://ror.org/05nzf7q96","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210148743","https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Graziano Pesole","raw_affiliation_strings":["Dipartimento di Bioscienze, Biotecnologie e Scienze Farmacologiche, Universita `di Bari, Italy","Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy and","University of Milan, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Bioscienze, Biotecnologie e Scienze Farmacologiche, Universita `di Bari, Italy","institution_ids":["https://openalex.org/I5561750"]},{"raw_affiliation_string":"Istituto di Biomembrane e Bioenergetica, Consiglio Nazionale delle Ricerche, Bari, Italy and","institution_ids":["https://openalex.org/I4210148743"]},{"raw_affiliation_string":"University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067492946","display_name":"Giulio Pavesi","orcid":"https://orcid.org/0000-0001-5705-6249"},"institutions":[{"id":"https://openalex.org/I189158943","display_name":"University of Milan","ror":"https://ror.org/00wjc7c48","country_code":"IT","type":"education","lineage":["https://openalex.org/I189158943"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulio Pavesi","raw_affiliation_strings":["Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita `di Milano, Italy,","University of Milan, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita `di Milano, Italy,","institution_ids":["https://openalex.org/I189158943"]},{"raw_affiliation_string":"University of Milan, Milan, Italy","institution_ids":["https://openalex.org/I189158943"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5046629951"],"corresponding_institution_ids":["https://openalex.org/I189158943"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":2.1449,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.87583219,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"W1","first_page":"W510","last_page":"W515"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.841547966003418},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6228700280189514},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5788722634315491},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5076583623886108},{"id":"https://openalex.org/keywords/histone","display_name":"Histone","score":0.5053291916847229},{"id":"https://openalex.org/keywords/epigenetics","display_name":"Epigenetics","score":0.49782705307006836},{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.4896905720233917},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.48030346632003784},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4706900417804718},{"id":"https://openalex.org/keywords/rna-polymerase-ii","display_name":"RNA polymerase II","score":0.46391382813453674},{"id":"https://openalex.org/keywords/epigenomics","display_name":"Epigenomics","score":0.4285281300544739},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.4014396071434021},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2739158570766449}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.841547966003418},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6228700280189514},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5788722634315491},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5076583623886108},{"id":"https://openalex.org/C64927066","wikidata":"https://www.wikidata.org/wiki/Q36293","display_name":"Histone","level":3,"score":0.5053291916847229},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.49782705307006836},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.4896905720233917},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.48030346632003784},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4706900417804718},{"id":"https://openalex.org/C64350747","wikidata":"https://www.wikidata.org/wiki/Q15334993","display_name":"RNA polymerase II","level":5,"score":0.46391382813453674},{"id":"https://openalex.org/C121912465","wikidata":"https://www.wikidata.org/wiki/Q3589153","display_name":"Epigenomics","level":5,"score":0.4285281300544739},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.4014396071434021},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2739158570766449}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006657","descriptor_name":"Histones","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012321","descriptor_name":"DNA-Directed RNA Polymerases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012321","descriptor_name":"DNA-Directed RNA Polymerases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012321","descriptor_name":"DNA-Directed RNA Polymerases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gks483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks483","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W510/18784094/gks483.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22669907","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22669907","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:air.unimi.it:2434/206294","is_oa":true,"landing_page_url":"http://hdl.handle.net/2434/206294","pdf_url":null,"source":{"id":"https://openalex.org/S4306400516","display_name":"Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I189158943","host_organization_name":"University of Milan","host_organization_lineage":["https://openalex.org/I189158943"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2409728","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394253","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W510","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W510","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"pmh:oai:ricerca.uniba.it:11586/90391","is_oa":false,"landing_page_url":"http://hdl.handle.net/11586/90391","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/nar/gks483","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks483","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W510/18784094/gks483.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6776283834","display_name":null,"funder_award_id":"EPIGEN","funder_id":"https://openalex.org/F4320322651","funder_display_name":"Consiglio Nazionale delle Ricerche"}],"funders":[{"id":"https://openalex.org/F4320322651","display_name":"Consiglio Nazionale delle Ricerche","ror":"https://ror.org/04zaypm56"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2127234799.pdf","grobid_xml":"https://content.openalex.org/works/W2127234799.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W118243704","https://openalex.org/W1979594866","https://openalex.org/W2009935171","https://openalex.org/W2026731344","https://openalex.org/W2036372456","https://openalex.org/W2057589481","https://openalex.org/W2065579185","https://openalex.org/W2083861085","https://openalex.org/W2086376086","https://openalex.org/W2105712639","https://openalex.org/W2117792884","https://openalex.org/W2122855948","https://openalex.org/W2123490534","https://openalex.org/W2126468786","https://openalex.org/W2127640118","https://openalex.org/W2138336848"],"related_works":["https://openalex.org/W2946746360","https://openalex.org/W4318473910","https://openalex.org/W2606237140","https://openalex.org/W2100856525","https://openalex.org/W2329375094","https://openalex.org/W2119272378","https://openalex.org/W2303263226","https://openalex.org/W1499793237","https://openalex.org/W2039269859","https://openalex.org/W4205601555"],"abstract_inverted_index":{"The":[0,106,189],"regulation":[1,186],"of":[2,4,56,82,85,91,99,112,119,139,166,172,177,183],"transcription":[3,16],"eukaryotic":[5],"genes":[6,120],"is":[7,47,192,198],"a":[8,48,53,83,95,110,122],"very":[9],"complex":[10],"process,":[11],"which":[12,35,90,131],"involves":[13],"interactions":[14],"between":[15],"factors":[17,26],"(TFs)":[18],"and":[19,32,40,67,142,158,187,196],"DNA,":[20],"as":[21,23,174,176],"well":[22,175],"other":[24,117],"epigenetic":[25],"like":[27,44],"histone":[28,63,154],"modifications,":[29,64,155],"DNA":[30],"methylation,":[31],"so":[33,159],"on,":[34,160],"nowadays":[36],"can":[37,108,127,162],"be":[38,109,136],"studied":[39],"characterized":[41],"with":[42,78],"techniques":[43],"ChIP-Seq.":[45],"Cscan":[46],"web":[49,190],"resource":[50],"that":[51],"includes":[52],"large":[54],"collection":[55],"genome-wide":[57],"ChIP-Seq":[58,74],"experiments":[59,75,93],"performed":[60],"on":[61,150],"TFs,":[62],"RNA":[65],"polymerases":[66],"others.":[68],"Enriched":[69],"peak":[70],"regions":[71],"from":[72],"the":[73,79,92,102,140,164,167,178,184],"are":[76,133],"crossed":[77],"genomic":[80],"coordinates":[81],"set":[84,118],"input":[86,103,107],"genes,":[87,114,141],"to":[88,135],"identify":[89],"present":[94],"statistically":[96],"significant":[97],"number":[98],"peaks":[100],"within":[101],"genes'":[104,185],"loci.":[105],"cluster":[111],"co-expressed":[113],"or":[115,170,180],"any":[116],"sharing":[121],"common":[123,137],"regulatory":[124],"profile.":[125],"Users":[126],"thus":[128],"single":[129],"out":[130],"TFs":[132,168],"likely":[134],"regulators":[138],"their":[143],"respective":[144],"correlations.":[145],"Also,":[146],"by":[147],"examining":[148],"results":[149],"promoter":[151],"activation,":[152],"transcription,":[153],"polymerase":[156],"binding":[157],"users":[161],"investigate":[163],"effect":[165],"(activation":[169],"repression":[171],"transcription)":[173],"cell":[179],"tissue":[181],"specificity":[182],"expression.":[188],"interface":[191],"free":[193],"for":[194],"use,":[195],"there":[197],"no":[199],"login":[200],"requirement.":[201],"Available":[202],"at:":[203],"http://www.beaconlab.it/cscan.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":9},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":2}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
