{"id":"https://openalex.org/W2113897954","doi":"https://doi.org/10.1093/nar/gks436","title":"Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank","display_name":"Super: a web server to rapidly screen superposable oligopeptide fragments from the protein data bank","publication_year":2012,"publication_date":"2012-05-24","ids":{"openalex":"https://openalex.org/W2113897954","doi":"https://doi.org/10.1093/nar/gks436","mag":"2113897954","pmid":"https://pubmed.ncbi.nlm.nih.gov/22638586"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks436","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W334/18783537/gks436.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W334/18783537/gks436.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007992381","display_name":"James H. Collier","orcid":"https://orcid.org/0000-0002-0020-421X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"James H. Collier","raw_affiliation_strings":["Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","Pennsylvania State University, State College, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University, Clayton, Victoria 3800, Australia","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057325979","display_name":"Arthur M. Lesk","orcid":"https://orcid.org/0000-0002-2596-0601"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arthur M. Lesk","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, Huck Institutes of Genomics, Proteomics and Bioinformatics, Pennsylvania State University, University Park, PA, 16802, USA","Pennsylvania State University, State College, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, Huck Institutes of Genomics, Proteomics and Bioinformatics, Pennsylvania State University, University Park, PA, 16802, USA","institution_ids":["https://openalex.org/I130769515"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083095334","display_name":"Mar\u00eda Garc\u00eda de la Banda","orcid":"https://orcid.org/0000-0002-6666-514X"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Maria Garcia de la Banda","raw_affiliation_strings":["Faculty of Information Technology, Monash University, Clayton, Victoria, 3800, Australia and","Pennsylvania State University, State College, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University, Clayton, Victoria, 3800, Australia and","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081792355","display_name":"Arun S. Konagurthu","orcid":"https://orcid.org/0000-0002-1610-8329"},"institutions":[{"id":"https://openalex.org/I130769515","display_name":"Pennsylvania State University","ror":"https://ror.org/04p491231","country_code":"US","type":"education","lineage":["https://openalex.org/I130769515"]},{"id":"https://openalex.org/I56590836","display_name":"Monash University","ror":"https://ror.org/02bfwt286","country_code":"AU","type":"education","lineage":["https://openalex.org/I56590836"]}],"countries":["AU","US"],"is_corresponding":false,"raw_author_name":"Arun S. Konagurthu","raw_affiliation_strings":["Faculty of Information Technology, Monash University, Clayton, Victoria, 3800, Australia and","Pennsylvania State University, State College, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, Monash University, Clayton, Victoria, 3800, Australia and","institution_ids":["https://openalex.org/I56590836"]},{"raw_affiliation_string":"Pennsylvania State University, State College, United States","institution_ids":["https://openalex.org/I130769515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":0.6237,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.6690806,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"40","issue":"W1","first_page":"W334","last_page":"W339"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.8351715803146362},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.7625515460968018},{"id":"https://openalex.org/keywords/oligopeptide","display_name":"Oligopeptide","score":0.7042087912559509},{"id":"https://openalex.org/keywords/web-server","display_name":"Web server","score":0.6763591766357422},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6234554648399353},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4796760082244873},{"id":"https://openalex.org/keywords/web-application","display_name":"Web application","score":0.43833598494529724},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42506304383277893},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.39369139075279236},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3611922264099121},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.34390315413475037},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.194871723651886},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.17835918068885803},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.16652020812034607},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.1644223928451538},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10311973094940186}],"concepts":[{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.8351715803146362},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.7625515460968018},{"id":"https://openalex.org/C13935069","wikidata":"https://www.wikidata.org/wiki/Q2157266","display_name":"Oligopeptide","level":3,"score":0.7042087912559509},{"id":"https://openalex.org/C11392498","wikidata":"https://www.wikidata.org/wiki/Q11288","display_name":"Web server","level":3,"score":0.6763591766357422},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6234554648399353},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4796760082244873},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.43833598494529724},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42506304383277893},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39369139075279236},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3611922264099121},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.34390315413475037},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.194871723651886},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.17835918068885803},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.16652020812034607},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.1644223928451538},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10311973094940186},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009842","descriptor_name":"Oligopeptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1093/nar/gks436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks436","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W334/18783537/gks436.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22638586","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22638586","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"pmh:oai:monash.edu:openaire/26167096-fc4a-40a7-9041-8047a55ece9e","is_oa":true,"landing_page_url":"https://research.monash.edu/en/publications/26167096-fc4a-40a7-9041-8047a55ece9e","pdf_url":"https://researchmgt.monash.edu/ws/files/213509865/2162245_oa.pdf","source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Collier, J, Lesk, A M, Garcia De La Banda, M J & Konagurthu, A S 2012, 'Super: A web server to rapidly screen superposable oligopeptide fragments from the protein data bank', Nucleic Acids Research, vol. 40, pp. 1 - 6. https://doi.org/10.1093/nar/gks436","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2409801","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394326","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:monash.edu:Publications/26167096-fc4a-40a7-9041-8047a55ece9e","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402625","display_name":"Monash University Research Portal (Monash University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56590836","host_organization_name":"Monash University","host_organization_lineage":["https://openalex.org/I56590836"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W334","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W334","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"}],"best_oa_location":{"id":"doi:10.1093/nar/gks436","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks436","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W334/18783537/gks436.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320971","display_name":"Monash University","ror":"https://ror.org/02bfwt286"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2113897954.pdf","grobid_xml":"https://content.openalex.org/works/W2113897954.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1495500910","https://openalex.org/W1506895146","https://openalex.org/W1993391362","https://openalex.org/W1994139672","https://openalex.org/W2036983842","https://openalex.org/W2077743314","https://openalex.org/W2086003339","https://openalex.org/W2086473602","https://openalex.org/W2093343386","https://openalex.org/W2108107014","https://openalex.org/W2121293808","https://openalex.org/W2123681603","https://openalex.org/W2125696348","https://openalex.org/W2130479394","https://openalex.org/W2136567909","https://openalex.org/W2147085530","https://openalex.org/W2161370818","https://openalex.org/W2460099371","https://openalex.org/W2743846481","https://openalex.org/W2977896254","https://openalex.org/W4246407778"],"related_works":["https://openalex.org/W3126783617","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W4353055924","https://openalex.org/W2013211627","https://openalex.org/W2806488847","https://openalex.org/W2121688928","https://openalex.org/W2069319199","https://openalex.org/W2772651271","https://openalex.org/W4389958586"],"abstract_inverted_index":{"Searching":[0],"for":[1],"well-fitting":[2],"3D":[3],"oligopeptide":[4,124],"fragments":[5,47,90,103,125],"within":[6],"a":[7,27,51,54,66,86,108,130],"large":[8,87],"collection":[9],"of":[10,36,57,77,89,98,102],"protein":[11,22,40],"structures":[12,119],"is":[13,135],"an":[14],"important":[15],"task":[16,35],"central":[17],"to":[18,33,44,83,94,126],"many":[19],"analyses":[20],"involving":[21],"structures.":[23],"This":[24,79],"article":[25],"reports":[26],"new":[28],"web":[29,133],"server,":[30],"Super,":[31],"dedicated":[32],"the":[34,39,70,81,95,99,113],"rapidly":[37],"screening":[38],"data":[41],"bank":[42],"(PDB)":[43],"identify":[45],"all":[46],"that":[48,91],"superpose":[49],"with":[50],"query":[52],"under":[53,129],"prespecified":[55],"threshold":[56],"root-mean-square":[58],"deviation":[59],"(RMSD).":[60],"Super":[61,111,132],"relies":[62],"on":[63,69],"efficiently":[64],"computing":[65],"mathematical":[67],"bound":[68],"commonly":[71],"used":[72],"structural":[73],"similarity":[74],"measure,":[75],"RMSD":[76],"superposition.":[78],"allows":[80],"server":[82,134],"filter":[84],"out":[85],"proportion":[88],"are":[92],"unrelated":[93],"query;":[96],">99%":[97],"total":[100],"number":[101],"in":[104,128],"some":[105],"cases.":[106],"For":[107],"typical":[109],"query,":[110],"scans":[112],"current":[114],"PDB":[115],"containing":[116],"over":[117],"80,500":[118],"(with":[120],"\u223c40":[121],"million":[122],"potential":[123],"match)":[127],"minute.":[131],"freely":[136],"accessible":[137],"from:":[138],"http://lcb.infotech.monash.edu.au/super.":[139]},"counts_by_year":[{"year":2021,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
