{"id":"https://openalex.org/W1969647281","doi":"https://doi.org/10.1093/nar/gks427","title":"Savant Genome Browser 2: visualization and analysis for population-scale genomics","display_name":"Savant Genome Browser 2: visualization and analysis for population-scale genomics","publication_year":2012,"publication_date":"2012-05-25","ids":{"openalex":"https://openalex.org/W1969647281","doi":"https://doi.org/10.1093/nar/gks427","mag":"1969647281","pmid":"https://pubmed.ncbi.nlm.nih.gov/22638571"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gks427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks427","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W615/4917153/gks427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/nar/article-pdf/40/W1/W615/4917153/gks427.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051642782","display_name":"M. Fiume","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"M. Fiume","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079768173","display_name":"Eric Smith","orcid":null},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"E. J. M. Smith","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006499606","display_name":"A.H. Brook","orcid":"https://orcid.org/0000-0002-3484-3888"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"A. Brook","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033872539","display_name":"Dario Strbenac","orcid":"https://orcid.org/0000-0001-9234-3243"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"D. Strbenac","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037318282","display_name":"Blair Turner","orcid":"https://orcid.org/0000-0002-0517-2173"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"B. Turner","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001576495","display_name":"A. M. Mezlini","orcid":null},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"A. M. Mezlini","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029455059","display_name":"Mark D. Robinson","orcid":"https://orcid.org/0000-0002-3048-5518"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"M. D. Robinson","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074905519","display_name":"Shoshana J. Wodak","orcid":"https://orcid.org/0000-0002-0701-6545"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":false,"raw_author_name":"S. J. Wodak","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012113499","display_name":"Michael Brudno","orcid":"https://orcid.org/0000-0001-7947-2243"},"institutions":[{"id":"https://openalex.org/I112260969","display_name":"Ontario Institute for Cancer Research","ror":"https://ror.org/043q8yx54","country_code":"CA","type":"funder","lineage":["https://openalex.org/I112260969"]},{"id":"https://openalex.org/I136750679","display_name":"Garvan Institute of Medical Research","ror":"https://ror.org/01b3dvp57","country_code":"AU","type":"nonprofit","lineage":["https://openalex.org/I136750679","https://openalex.org/I4210087284"]}],"countries":["AU","CA"],"is_corresponding":true,"raw_author_name":"M. Brudno","raw_affiliation_strings":["Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","Garvan Institute of Medical Research, Darlinghurst, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Toronto, Ontario, Canada M5S 2E4, 2 Epigenetics Laboratory Cancer Research Program, Garvan Institute of Medical Research, Sydney, New South Wales 2011, Australia, 3 Molecular Structure and Function Program, 4 Centre for Computational Medicine, Hospital for Sick Children, Toronto, Ontario, Canada M5G 1L7, 5 Institute of Molecular Life Sciences, University of Zurich, 8057 Z\u00fcrich, Switzerland and 6 Department of Biochemistry, University of Toronto, Ontario, Canada M5S 1A8","institution_ids":["https://openalex.org/I112260969"]},{"raw_affiliation_string":"Garvan Institute of Medical Research, Darlinghurst, Australia","institution_ids":["https://openalex.org/I136750679"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5012113499"],"corresponding_institution_ids":["https://openalex.org/I112260969","https://openalex.org/I136750679"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":3.928,"has_fulltext":true,"cited_by_count":56,"citation_normalized_percentile":{"value":0.94610563,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"40","issue":"W1","first_page":"W615","last_page":"W621"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8050986528396606},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5573491454124451},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.5209837555885315},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5110608339309692},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4886382222175598},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4867711067199707},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.47132304310798645},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.45107147097587585},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4434848427772522},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35253453254699707},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25007447600364685},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13673564791679382},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08196401596069336}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8050986528396606},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5573491454124451},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.5209837555885315},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5110608339309692},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4886382222175598},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4867711067199707},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.47132304310798645},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.45107147097587585},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4434848427772522},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35253453254699707},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25007447600364685},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13673564791679382},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08196401596069336},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011153","descriptor_name":"Population","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011153","descriptor_name":"Population","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011153","descriptor_name":"Population","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054643","descriptor_name":"INDEL Mutation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1093/nar/gks427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks427","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W615/4917153/gks427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"pmid:22638571","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22638571","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3394255","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3394255","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmh:oai:www.zora.uzh.ch:64232","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Fiume, Marc; Smith, Eric J M; Brook, Andrew; Strbenac, Dario; Turner, Brian; Mezlini, Aziz M; Robinson, Mark D; Wodak, Shoshana J; Brudno, Michael (2012). Savant Genome Browser 2: visualization and analysis for population-scale genomics. Nucleic Acids Research, 40(W1):W615-W621.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.786.730","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.786.730","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp.ncbi.nlm.nih.gov/pub/pmc/ce/e4/gks427.PMC3394255.pdf","raw_type":"text"},{"id":"pmh:oai:open-archive.highwire.org:nar:40/W1/W615","is_oa":false,"landing_page_url":"http://nar.oxfordjournals.org/cgi/content/short/40/W1/W615","pdf_url":null,"source":{"id":"https://openalex.org/S4406923041","display_name":"HighWire Press Open Archive","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"TEXT"},{"id":"doi:10.5167/uzh-64232","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-64232","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/nar/gks427","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gks427","pdf_url":"https://academic.oup.com/nar/article-pdf/40/W1/W615/4917153/gks427.pdf","source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322675","display_name":"Mitacs","ror":"https://ror.org/00cjrc276"},{"id":"https://openalex.org/F4320334506","display_name":"Canadian Institutes of Health Research","ror":"https://ror.org/01gavpb45"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1969647281.pdf","grobid_xml":"https://content.openalex.org/works/W1969647281.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W2010502047","https://openalex.org/W2021341670","https://openalex.org/W2065987416","https://openalex.org/W2101342813","https://openalex.org/W2103017472","https://openalex.org/W2105035271","https://openalex.org/W2114104545","https://openalex.org/W2119180969","https://openalex.org/W2127634492","https://openalex.org/W2128016314","https://openalex.org/W2136482257","https://openalex.org/W2137779717","https://openalex.org/W2141458291","https://openalex.org/W2148264682","https://openalex.org/W2148683465","https://openalex.org/W2149992227","https://openalex.org/W2158197251","https://openalex.org/W2162530578","https://openalex.org/W2168783124","https://openalex.org/W2171777347","https://openalex.org/W2885727518"],"related_works":["https://openalex.org/W189065216","https://openalex.org/W3162211406","https://openalex.org/W1534242140","https://openalex.org/W2525150146","https://openalex.org/W2765901147","https://openalex.org/W2161951664","https://openalex.org/W2171298469","https://openalex.org/W2540256777","https://openalex.org/W2791266083","https://openalex.org/W2563824483"],"abstract_inverted_index":{"High-throughput":[0],"sequencing":[1],"(HTS)":[2],"technologies":[3],"are":[4,33,48],"providing":[5],"an":[6],"unprecedented":[7],"capacity":[8],"for":[9,18,29,35,91,116,135],"data":[10,20,31],"generation,":[11],"and":[12,22,58,93,105,113,120,123,159],"there":[13],"is":[14,130,168],"a":[15,88,127,141],"corresponding":[16],"need":[17],"efficient":[19],"exploration":[21],"analysis":[23,32,95],"capabilities.":[24],"Although":[25],"most":[26,49],"existing":[27,106],"tools":[28,47,107],"HTS":[30,97],"developed":[34,147],"either":[36],"automated":[37,124,160],"(e.g.":[38,42],"genotyping)":[39],"or":[40],"visualization":[41,57,111],"genome":[43],"browsing)":[44],"purposes,":[45],"such":[46],"powerful":[50,131],"when":[51],"combined.":[52],"For":[53],"example,":[54],"integration":[55],"of":[56,83,96,143,156],"computation":[59],"allows":[60],"users":[61],"to":[62],"iteratively":[63],"refine":[64],"their":[65],"analyses":[66,125,161],"by":[67,108,148],"updating":[68],"computational":[69,94],"parameters":[70],"within":[71],"the":[72,80,84,149,154],"visual":[73,92,122,158],"framework":[74],"in":[75,126],"real-time.":[76],"Here":[77],"we":[78],"introduce":[79],"second":[81],"version":[82],"Savant":[85,99,150,165],"Genome":[86,166],"Browser,":[87],"standalone":[89],"program":[90],"data.":[98],"substantially":[100],"improves":[101],"upon":[102],"its":[103],"predecessor":[104],"introducing":[109],"innovative":[110],"modes":[112],"navigation":[114],"interfaces":[115],"several":[117],"genomic":[118],"datatypes,":[119],"synergizing":[121],"way":[128],"that":[129,145],"yet":[132],"easy":[133],"even":[134],"non-expert":[136],"users.":[137],"We":[138],"also":[139],"present":[140],"number":[142],"plugins":[144],"were":[146],"Community,":[151],"which":[152],"demonstrate":[153],"power":[155],"integrating":[157],"using":[162],"Savant.":[163],"The":[164],"Browser":[167],"freely":[169],"available":[170],"(open":[171],"source)":[172],"at":[173],"www.savantbrowser.com.":[174]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":11},{"year":2013,"cited_by_count":9},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
